Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.1H4CIU Arachis hypogaea HOM05D004041 ORTHO05D004564 1.6e-123 447.6 629 100.0
Glyma.14G131900 Glycine max HOM05D004041 ORTHO05D004564 7.8e-78 295.8 222 77.9
Lj1g0018267 Lotus japonicus HOM05D004041 ORTHO05D004564 8.0e-75 285.8 218 75.7
Glyma.17G200600 Glycine max HOM05D004041 ORTHO05D004564 1.8e-74 284.6 220 73.6
Ca_12887_v3 Cicer arietinum L. HOM05D004041 ORTHO05D004564 1.2e-73 282.0 216 74.1
Phvul.006G038688 Phaseolus vulgaris HOM05D004041 ORTHO05D004564 1.3e-72 278.5 217 72.4
VMungo1383G3608 Vigna mungo HOM05D004041 ORTHO05D004564 1.1e-71 275.4 222 71.2
Phvul.001G088700 Phaseolus vulgaris HOM05D004041 ORTHO05D004564 6.0e-70 269.6 222 69.4
Psat6g031640 Pisum sativum HOM05D004041 ORTHO05D004564 1.2e-67 261.9 209 72.2
Lalb_Chr11g0064071 Lupinus albus HOM05D004041 ORTHO05D004564 6.8e-66 256.1 216 69.0
TWI15G0012 Tripterygium wilfordii HOM05D004041 ORTHO05D004564 5.8e-65 253.1 223 66.4
Lalb_Chr23g0268921 Lupinus albus HOM05D004041 ORTHO05D004564 7.5e-65 252.7 211 70.6
Manes.03G046500 Manihot esculenta HOM05D004041 ORTHO05D004564 9.8e-65 252.3 198 69.7
CiPaw.07G215400 Carya illinoinensis HOM05D004041 ORTHO05D004564 4.9e-64 250.0 211 64.5
Atru.chr4.1391 Acer truncatum HOM05D004041 ORTHO05D004564 6.4e-64 249.6 225 63.6
Sabra06G0181500 Salix brachista HOM05D004041 ORTHO05D004564 2.1e-62 244.6 227 64.3
MD15G1111100 Malus domestica HOM05D004041 ORTHO05D004564 3.5e-62 243.8 202 65.3
Potri.006G233000 Populus trichocarpa HOM05D004041 ORTHO05D004564 6.0e-62 243.0 209 66.5
Ciclev10007432m.g Citrus clementina HOM05D004041 ORTHO05D004564 3.9e-61 240.4 196 66.3
Sed0021561 Sechium edule HOM05D004041 ORTHO05D004564 3.9e-61 240.4 217 59.9
CiPaw.07G050600 Carya illinoinensis HOM05D004041 ORTHO05D004564 5.0e-61 240.0 211 64.0
CsaV3_2G031560 Cucumis sativus L. HOM05D004041 ORTHO05D004564 1.1e-60 238.8 217 61.8
Prupe.1G463200 Prunus persica HOM05D004041 ORTHO05D004564 2.8e-59 234.2 200 65.0
Eucgr.H02470 Eucalyptus grandis HOM05D004041 ORTHO05D004564 6.2e-59 233.0 220 61.4
ClCG08G012810 Citrullus lanatus HOM05D004041 ORTHO05D004564 1.4e-58 231.9 206 62.1
PGR119G2538 Punica granatum HOM05D004041 ORTHO05D004564 1.2e-57 228.8 207 63.8
MD08G1133100 Malus domestica HOM05D004041 ORTHO05D004564 2.6e-57 227.6 203 62.1
QL12p024601 Quercus lobata HOM05D004041 ORTHO05D004564 2.2e-56 224.6 220 60.0
FAN15G2764 Fragaria x ananassa HOM05D004041 ORTHO05D004564 3.2e-55 220.7 215 59.1
RcHm_v2.0_Chr6g0312381 Rosa chinensis HOM05D004041 ORTHO05D004564 5.4e-55 219.9 218 58.3
FAN27G0182 Fragaria x ananassa HOM05D004041 ORTHO05D004564 2.1e-54 218.0 211 59.2
GSVIVG01035595001 Vitis vinifera HOM05D004041 ORTHO05D004564 3.5e-54 217.2 201 62.2
TWI60G0712 Tripterygium wilfordii HOM05D004041 ORTHO05D004564 6.0e-54 216.5 177 66.7
Actinidia12476 Actinidia chinensis HOM05D004041 ORTHO05D004564 7.8e-54 216.1 224 58.9
FAN20G2913 Fragaria x ananassa HOM05D004041 ORTHO05D004564 7.8e-54 216.1 211 58.8
HanXRQChr10g0299041 Helianthus annuus HOM05D004041 ORTHO05D004564 3.0e-53 214.2 196 64.8
FvH4_2g30620 Fragaria vesca HOM05D004041 ORTHO05D004564 5.1e-53 213.4 211 58.3
FAN24G0669 Fragaria x ananassa HOM05D004041 ORTHO05D004564 5.1e-53 213.4 211 58.3
Lj8C419G2 Lonicera japonica HOM05D004041 ORTHO05D004564 5.1e-53 213.4 146 78.1
Hund03240 Selenicereus undatus HOM05D004041 ORTHO05D004564 2.5e-52 211.1 225 56.9
Lsat_1_v5_gn_4_74560 Lactuca sativa HOM05D004041 ORTHO05D004564 4.3e-52 210.3 152 75.0
Nitab4.5_0008752g0030 Nicotiana tabacum HOM05D004041 ORTHO05D004564 1.6e-51 208.4 181 65.7
Nitab4.5_0000288g0130 Nicotiana tabacum HOM05D004041 ORTHO05D004564 2.1e-51 208.0 220 58.6
Cc03_g09420 Coffea canephora HOM05D004041 ORTHO05D004564 1.8e-50 204.9 224 57.1
THA.LOC104799001 Tarenaya hassleriana HOM05D004041 ORTHO05D004564 4.0e-50 203.8 201 58.2
Aa31LG4G18100 Aethionema arabicum HOM05D004041 ORTHO05D004564 6.8e-50 203.0 211 56.9
TAR383G1094 Trochodendron aralioides HOM05D004041 ORTHO05D004564 8.9e-50 202.6 254 52.0
Thhalv10010217m.g Eutrema salsugineum HOM05D004041 ORTHO05D004564 1.5e-49 201.8 222 56.3
Thecc.10G127600 Theobroma cacao HOM05D004041 ORTHO05D004564 1.5e-49 201.8 221 57.5
CSS0017741 Camellia sinensis var. sinensis HOM05D004041 ORTHO05D004564 3.4e-49 200.7 230 57.8
Migut.E01401 Erythranthe guttata HOM05D004041 ORTHO05D004564 3.4e-49 200.7 201 57.7
Gohir.A06G171600 Gossypium hirsutum HOM05D004041 ORTHO05D004564 3.4e-49 200.7 219 58.4
AL5G29450 Arabidopsis lyrata HOM05D004041 ORTHO05D004564 4.4e-49 200.3 205 59.5
Gorai.010G210300 Gossypium raimondii HOM05D004041 ORTHO05D004564 4.4e-49 200.3 219 58.9
Sc06g0000040 Simmondsia chinensis HOM05D004041 ORTHO05D004564 4.4e-49 200.3 249 50.2
Sc06g0001360 Simmondsia chinensis HOM05D004041 ORTHO05D004564 4.4e-49 200.3 249 50.2
EL10Ac2g03659 Beta vulgaris HOM05D004041 ORTHO05D004564 5.8e-49 199.9 168 65.5
Gohir.D06G179700 Gossypium hirsutum HOM05D004041 ORTHO05D004564 7.6e-49 199.5 219 58.0
CARHR158630 Cardamine hirsuta HOM05D004041 ORTHO05D004564 1.7e-48 198.4 220 55.9
AT3G49601 Arabidopsis thaliana HOM05D004041 ORTHO05D004564 4.9e-48 196.8 205 58.0
Duzib128G1534 Durio zibethinus HOM05D004041 ORTHO05D004564 4.9e-48 196.8 221 57.0
SalBow8G3032 Salvia bowleyana HOM05D004041 ORTHO05D004564 4.9e-48 196.8 190 60.5
DCAR_004521 Daucus carota HOM05D004041 ORTHO05D004564 6.4e-48 196.4 210 60.5
Duzib106G1246 Durio zibethinus HOM05D004041 ORTHO05D004564 6.4e-48 196.4 205 59.0
Peaxi162Scf00213g01515 Petunia axillaris HOM05D004041 ORTHO05D004564 6.4e-48 196.4 198 58.1
C08p24610 Brassica napus HOM05D004041 ORTHO05D004564 1.9e-47 194.9 220 53.6
BolC8t50077H Brassica oleracea HOM05D004041 ORTHO05D004564 1.9e-47 194.9 220 53.6
BcaC07g39425 Brassica carinata HOM05D004041 ORTHO05D004564 5.4e-47 193.4 219 53.4
PGSC0003DMG401029567 Solanum tuberosum HOM05D004041 ORTHO05D004564 5.4e-47 193.4 177 63.8
Sp5g12500 Schrenkiella parvula HOM05D004041 ORTHO05D004564 1.2e-46 192.2 205 56.6
Solyc08g074440.4 Solanum lycopersicum HOM05D004041 ORTHO05D004564 1.6e-46 191.8 204 57.4
COL.COLO4_09287 Corchorus olitorius HOM05D004041 ORTHO05D004564 2.1e-46 191.4 224 52.2
Glyma.11G174282 Glycine max HOM05D004041 ORTHO05D004564 2.7e-46 191.0 127 79.5
Thecc.10G128100 Theobroma cacao HOM05D004041 ORTHO05D004564 2.7e-46 191.0 144 70.8
Sopen08g023080 Solanum pennellii HOM05D004041 ORTHO05D004564 3.5e-46 190.7 177 62.7
Thecc.10G128300 Theobroma cacao HOM05D004041 ORTHO05D004564 3.5e-46 190.7 144 70.1
BcaB01g00690 Brassica carinata HOM05D004041 ORTHO05D004564 4.6e-46 190.3 204 55.9
Gorai.010G210000 Gossypium raimondii HOM05D004041 ORTHO05D004564 7.8e-46 189.5 154 68.2
CAN.G195.14 Capsicum annuum HOM05D004041 ORTHO05D004564 1.3e-45 188.7 147 71.4
Gohir.D06G179400 Gossypium hirsutum HOM05D004041 ORTHO05D004564 1.3e-45 188.7 154 68.2
arahy.Tifrunner.gnm1.ann1.EPLR59 Arachis hypogaea HOM05D004041 ORTHO05D004564 1.1e-44 185.7 496 98.2
AUR62020692 Chenopodium quinoa HOM05D004041 ORTHO05D004564 1.5e-44 185.3 215 55.3
AUR62028033 Chenopodium quinoa HOM05D004041 ORTHO05D004564 4.3e-44 183.7 212 52.8
MBI11_g09070_MAGBIO Magnolia biondii HOM05D004041 ORTHO05D004564 4.3e-44 183.7 237 52.7
A06p18110 Brassica napus HOM05D004041 ORTHO05D004564 5.6e-44 183.3 205 54.6
BraA06t24900Z Brassica rapa HOM05D004041 ORTHO05D004564 9.6e-44 182.6 205 54.6
SGA_v2.0_scaffold121G33039 Striga asiatica HOM05D003985 ORTHO05D005253 1.2e-43 182.2 217 53.0
PSO210G2134 Papaver somniferum HOM05D004041 ORTHO05D004564 2.8e-43 181.0 147 68.0
Aqoxy7G02570 Aquilegia oxysepala HOM05D004041 ORTHO05D004564 6.2e-43 179.9 143 68.5
Medtr1g010100 Medicago truncatula HOM05D004041 ORTHO05D004564 1.1e-42 179.1 107 85.0
PSO541G4756 Papaver somniferum HOM05D004041 ORTHO05D004564 1.4e-42 178.7 154 63.6
Ah.10g033610 Amaranthus hybridus HOM05D004041 ORTHO05D004564 1.8e-42 178.3 209 52.6
Nitab4.5_0000648g0040 Nicotiana tabacum HOM05D004041 ORTHO05D004564 1.8e-42 178.3 158 65.2
TPR.G10377 Trifolium pratense HOM05D004041 ORTHO05D004564 6.9e-42 176.4 108 83.3
ECA234G4028 Erigeron canadensis HOM05D004041 ORTHO05D004564 9.0e-42 176.0 215 52.1
PSO832G4585 Papaver somniferum HOM05D004041 ORTHO05D004564 2.0e-41 174.9 147 66.0
Lj8C415T2 Lonicera japonica HOM05D004041 ORTHO05D004564 4.4e-41 173.7 113 78.8
TPR.G20436 Trifolium pratense HOM05D004041 ORTHO05D004564 7.6e-41 172.9 106 83.0
Cpa.g.sc117.15 Carica papaya HOM05D004041 ORTHO05D004564 1.7e-40 171.8 112 75.9
Nn5g27656 Nelumbo nucifera HOM05D004041 ORTHO05D004564 1.4e-39 168.7 108 83.3
vmacro00640 Vaccinium macrocarpon HOM05D004041 ORTHO05D004564 5.4e-39 166.8 109 75.2
CSS0020148 Camellia sinensis var. sinensis HOM05D004041 ORTHO05D004564 2.7e-38 164.5 118 74.6
Mapoly0057s0059 Marchantia polymorpha HOM05D004041 ORTHO05D004564 4.6e-38 163.7 150 57.3
AagrBONN_evm.TU.Sc2ySwM_344.5195 Anthoceros agrestis HOM05D004041 ORTHO05D004564 6.0e-38 163.3 151 57.0
Pp3c3_10000 Physcomitrium patens HOM05D004041 ORTHO05D004564 6.0e-38 163.3 204 48.0
ATR0665G601 Amborella trichopoda HOM05D004041 ORTHO05D004564 7.8e-38 162.9 209 52.2
THA.LOC109116738 Tarenaya hassleriana HOM05D004041 ORTHO05D004564 1.3e-37 162.2 131 66.4
SEGI_30814 Sequoiadendron giganteum HOM05D004041 ORTHO05D004564 1.7e-37 161.8 156 57.1
CDE07G1163 Ceratophyllum demersum HOM05D004041 ORTHO05D004564 1.1e-36 159.1 222 49.1
Oeu026036.1 Olea europaea HOM05D004041 ORTHO05D004564 1.9e-36 158.3 120 72.5
CANSAT21G2467 Cannabis sativa HOM05D004041 ORTHO05D004564 7.3e-36 156.4 170 59.4
Carub.0005s1594 Capsella rubella HOM05D004041 ORTHO05D004564 1.6e-35 155.2 204 50.0
CBR_g88579 Chara braunii HOM05D004041 ORTHO05D004564 1.6e-35 155.2 150 54.0
Gohir.A06G171302 Gossypium hirsutum HOM05D004041 ORTHO05D004564 4.8e-35 153.7 133 65.4
TPR.G211 Trifolium pratense HOM05D004041 ORTHO05D004564 5.8e-33 146.7 95 80.0
BcaC09g49964 Brassica carinata HOM05D004041 ORTHO05D004564 2.2e-32 144.8 187 48.7
RcHm_v2.0_Chr4g0410401 Rosa chinensis HOM05D004041 ORTHO05D004564 4.2e-31 140.6 90 73.3
Zm00001eb344480 Zea mays HOM05D004041 ORTHO05D004564 1.6e-30 138.7 170 49.4
TAR626G0117 Trochodendron aralioides HOM05D002987 ORTHO05D003359 6.0e-30 136.7 95 75.8
Migut.A00845 Erythranthe guttata HOM05D004041 ORTHO05D004564 1.0e-29 136.0 149 57.0
Migut.A00847 Erythranthe guttata HOM05D004041 ORTHO05D004564 1.0e-29 136.0 149 57.0
C01p30700 Brassica napus HOM05D004041 ORTHO05D004564 2.3e-29 134.8 142 54.9
Cpa.g.c48129 Carica papaya HOM05D004041 ORTHO05D004564 2.5e-28 131.3 80 78.8
Dinv37476 Davidia involucrata HOM05D000079 ORTHO05D000211 4.3e-28 130.6 178 51.1
Nn8g41252 Nelumbo nucifera HOM05D004041 ORTHO05D004564 5.6e-28 130.2 139 56.8
Ca_11409_v3 Cicer arietinum L. HOM05D004041 ORTHO05D004564 3.7e-27 127.5 109 68.8
Zm00001eb204710 Zea mays HOM05D004041 ORTHO05D004564 4.8e-27 127.1 169 47.9
Dinv09449 Davidia involucrata HOM05D003985 ORTHO05D005253 6.2e-27 126.7 180 48.9
Ca_11411_v3 Cicer arietinum L. HOM05D004041 ORTHO05D004564 1.8e-26 125.2 109 67.9
Ah.11g044190 Amaranthus hybridus HOM05D004041 ORTHO05D004564 5.3e-26 123.6 105 61.9
Gohir.D06G179300 Gossypium hirsutum HOM05D004041 ORTHO05D004564 6.9e-26 123.2 137 55.5
Haze_21676 Corylus avellana HOM05D063909 ORTHO05D004564 2.0e-25 121.7 122 59.0
ATR0665G238 Amborella trichopoda HOM05D004041 ORTHO05D004564 2.2e-24 118.2 116 58.6
Mapoly0057s0051 Marchantia polymorpha HOM05D004041 ORTHO05D004564 1.1e-23 115.9 122 54.9
SalBow7G2142 Salvia bowleyana HOM05D004041 ORTHO05D004564 1.4e-23 115.5 102 56.9
Rhsim07G0241300 Rhododendron simsii HOM05D004041 ORTHO05D004564 3.5e-22 110.9 104 60.6
Mapoly0018s0007 Marchantia polymorpha HOM05D004041 ORTHO05D004564 4.6e-22 110.5 185 39.5
Zm00001eb204800 Zea mays HOM05D004041 ORTHO05D004564 5.1e-21 107.1 108 53.7
Zm00001eb204730 Zea mays HOM05D004041 ORTHO05D004564 6.7e-21 106.7 104 55.8
MCO09G628 Micromonas commoda HOM05D004041 ORTHO05D004564 1.5e-20 105.5 167 41.9
RhsimUnG0236200 Rhododendron simsii HOM05D004041 ORTHO05D004564 1.5e-20 105.5 104 58.7
Gorai.010G209300 Gossypium raimondii HOM05D004041 ORTHO05D004564 1.9e-20 105.1 152 48.7
Zm00001eb204820 Zea mays HOM05D004041 ORTHO05D004564 1.9e-20 105.1 105 54.3
Zm00001eb204790 Zea mays HOM05D004041 ORTHO05D004564 2.5e-20 104.8 109 53.2
Zm00001eb204810 Zea mays HOM05D004041 ORTHO05D004564 3.3e-20 104.4 104 54.8
Zm00001eb204830 Zea mays HOM05D004041 ORTHO05D004564 9.6e-20 102.8 104 53.8
Zm00001eb204750 Zea mays HOM05D004041 ORTHO05D004564 1.3e-19 102.4 101 54.5
Zm00001eb204770 Zea mays HOM05D004041 ORTHO05D004564 2.8e-19 101.3 107 52.3
Gorai.010G209900 Gossypium raimondii HOM05D004041 ORTHO05D004564 4.0e-18 97.4 179 41.9
Manes.07G111004 Manihot esculenta HOM05D004041 ORTHO05D004564 5.3e-18 97.1 105 46.7
BolC3t18797H Brassica oleracea HOM05D004041 ORTHO05D004564 6.9e-18 96.7 110 52.7
TPR.G14045 Trifolium pratense HOM05D004041 ORTHO05D004564 3.8e-16 90.9 52 82.7
Dinv19111 Davidia involucrata HOM05D004041 ORTHO05D004564 4.6e-14 84.0 60 75.0
TPR.G10966 Trifolium pratense HOM05D004041 ORTHO05D004564 6.0e-14 83.6 55 80.0
Cre09.g409200 Chlamydomonas reinhardtii HOM05D004041 ORTHO05D004564 1.3e-13 82.4 182 37.4
Zm00001eb204760 Zea mays HOM05D004041 ORTHO05D004564 1.3e-13 82.4 109 47.7
Zm00001eb357810 Zea mays HOM05D004041 ORTHO05D004564 1.8e-13 82.0 103 43.7
PRCOL_00006922 Prasinoderma coloniale HOM05D004041 ORTHO05D004564 2.3e-13 81.6 112 42.0
BcaC01g02423 Brassica carinata HOM05D004041 ORTHO05D004564 5.1e-13 80.5 81 56.8
Cfa024514 Carpinus fangiana HOM05D004041 ORTHO05D004564 5.7e-12 77.0 145 36.6
SGA_v2.0_scaffold7G03771 Striga asiatica HOM05D004041 ORTHO05D004564 1.3e-11 75.9 67 58.2
Gorai.010G211700 Gossypium raimondii HOM05D004041 ORTHO05D004564 1.4e-10 72.4 164 39.6
CARHR261000 Cardamine hirsuta HOM05D004041 ORTHO05D004564 3.1e-10 71.2 65 58.5
SGA_v2.0_scaffold100G29610 Striga asiatica HOM05D000178 ORTHO05D001740 2.5e-07 61.6 64 51.6
Medtr1g010090 Medicago truncatula HOM05D004041 ORTHO05D004564 3.2e-07 61.2 66 57.6
Thecc.09G051000 Theobroma cacao HOM05D004041 ORTHO05D004564 9.4e-07 59.7 55 50.9
TAR626G1323 Trochodendron aralioides HOM05D004041 ORTHO05D004564 1.6e-06 58.9 136 36.8


User provided reference genes

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