Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.1GMW3T Arachis hypogaea HOM05D002916 ORTHO05D003152 4.2e-75 285.0 191 100.0
arahy.Tifrunner.gnm1.ann1.T8X57X Arachis hypogaea HOM05D002916 ORTHO05D003152 4.2e-75 285.0 191 100.0
Glyma.10G072400 Glycine max HOM05D002916 ORTHO05D003152 5.7e-32 141.7 188 49.5
Ca_09009_v3 Cicer arietinum L. HOM05D002916 ORTHO05D003152 6.5e-28 128.3 189 43.9
Lj1g0017693 Lotus japonicus HOM05D002916 ORTHO05D003152 5.5e-27 125.2 190 45.3
Lalb_Chr01g0018131 Lupinus albus HOM05D002916 ORTHO05D003152 9.4e-27 124.4 197 43.7
Glyma.19G194943 Glycine max HOM05D002916 ORTHO05D003152 1.2e-26 124.0 189 42.9
Glyma.13G153800 Glycine max HOM05D002916 ORTHO05D003152 1.6e-26 123.6 190 45.3
Atru.chr8.1528 Acer truncatum HOM05D002916 ORTHO05D003152 1.8e-25 120.2 189 40.7
Atru.chr8.1530 Acer truncatum HOM05D002916 ORTHO05D003152 1.8e-25 120.2 189 40.7
Duzib093G0112 Durio zibethinus HOM05D002916 ORTHO05D003152 3.9e-25 119.0 189 40.2
Glyma.03G196300 Glycine max HOM05D002916 ORTHO05D003152 1.1e-24 117.5 189 40.2
Ciclev10013433m.g Citrus clementina HOM05D002916 ORTHO05D003152 4.4e-24 115.5 190 40.0
Manes.08G025700 Manihot esculenta HOM05D002916 ORTHO05D003152 4.4e-24 115.5 190 40.5
Phvul.001G190500 Phaseolus vulgaris HOM05D002916 ORTHO05D003152 4.4e-24 115.5 189 44.4
COL.COLO4_29727 Corchorus olitorius HOM05D002916 ORTHO05D003152 9.7e-24 114.4 188 38.8
TWI74G0225 Tripterygium wilfordii HOM05D002916 ORTHO05D003152 9.7e-24 114.4 190 41.1
Gorai.002G239800 Gossypium raimondii HOM05D002916 ORTHO05D003152 2.8e-23 112.8 189 40.7
Dinv31688 Davidia involucrata HOM05D004140 ORTHO05D006116 3.7e-23 112.5 188 39.9
Thecc.05G089800 Theobroma cacao HOM05D002916 ORTHO05D003152 3.7e-23 112.5 189 38.6
Cpa.g.sc5.15 Carica papaya HOM05D002916 ORTHO05D003152 6.3e-23 111.7 190 40.0
FAN02G4366 Fragaria x ananassa HOM05D002916 ORTHO05D003152 1.1e-22 110.9 191 41.4
RcHm_v2.0_Chr3g0473821 Rosa chinensis HOM05D002916 ORTHO05D003152 1.8e-22 110.2 191 39.8
Manes.09G055000 Manihot esculenta HOM05D002916 ORTHO05D003152 3.1e-22 109.4 189 40.7
Nn6g34891 Nelumbo nucifera HOM05D002916 ORTHO05D003152 3.1e-22 109.4 188 38.8
Gohir.D01G195600 Gossypium hirsutum HOM05D002916 ORTHO05D003152 4.1e-22 109.0 189 40.2
Rhsim03G0074900 Rhododendron simsii HOM05D002916 ORTHO05D003152 4.1e-22 109.0 190 37.4
TWI53G0172 Tripterygium wilfordii HOM05D002916 ORTHO05D003152 7.0e-22 108.2 190 40.0
Ciclev10012941m.g Citrus clementina HOM05D002916 ORTHO05D003152 9.1e-22 107.8 189 38.1
FvH4_6g18810 Fragaria vesca HOM05D002916 ORTHO05D003152 1.2e-21 107.5 191 39.8
FAN14G1204 Fragaria x ananassa HOM05D002916 ORTHO05D003152 1.2e-21 107.5 191 39.8
VMungo1383G0514 Vigna mungo HOM05D002916 ORTHO05D003152 1.6e-21 107.1 190 42.6
Duzib128G0442 Durio zibethinus HOM05D002916 ORTHO05D003152 2.6e-21 106.3 189 36.0
Prupe.7G109500 Prunus persica HOM05D002916 ORTHO05D003152 2.6e-21 106.3 190 38.4
FAN05G3486 Fragaria x ananassa HOM05D002916 ORTHO05D003152 5.9e-21 105.1 191 39.8
Gohir.A01G206200 Gossypium hirsutum HOM05D002916 ORTHO05D003152 5.9e-21 105.1 190 38.9
Potri.016G079700 Populus trichocarpa HOM05D002916 ORTHO05D003152 5.9e-21 105.1 188 38.8
QL05p034193 Quercus lobata HOM05D002916 ORTHO05D003152 7.7e-21 104.8 189 38.1
Potri.006G213100 Populus trichocarpa HOM05D002916 ORTHO05D003152 1.3e-20 104.0 189 40.2
FAN05G4254 Fragaria x ananassa HOM05D002916 ORTHO05D003152 2.2e-20 103.2 191 39.3
PGSC0003DMG400008880 Solanum tuberosum HOM05D002916 ORTHO05D003152 2.2e-20 103.2 207 40.1
Aqoxy4G02773 Aquilegia oxysepala HOM05D002916 ORTHO05D003152 3.8e-20 102.4 188 36.7
MD12G1036700 Malus domestica HOM05D002916 ORTHO05D003152 5.0e-20 102.1 192 37.5
Migut.L01781 Erythranthe guttata HOM05D002916 ORTHO05D003152 6.5e-20 101.7 190 44.7
MD14G1023400 Malus domestica HOM05D002916 ORTHO05D003152 8.5e-20 101.3 191 45.5
Nn2g14164 Nelumbo nucifera HOM05D002916 ORTHO05D003152 8.5e-20 101.3 188 37.2
Oeu047865.1 Olea europaea HOM05D002916 ORTHO05D003152 1.9e-19 100.1 189 36.0
Peaxi162Scf00404g00102 Petunia axillaris HOM05D002916 ORTHO05D003152 1.9e-19 100.1 193 36.3
MSTRG.26638 Avicennia marina HOM05D002916 ORTHO05D003152 2.5e-19 99.8 189 38.6
DCAR_013389 Daucus carota HOM05D002916 ORTHO05D003152 2.5e-19 99.8 192 38.0
Gohir.A07G134900 Gossypium hirsutum HOM05D002916 ORTHO05D003152 9.4e-19 97.8 192 34.9
Oeu056929.1 Olea europaea HOM05D002916 ORTHO05D003152 9.4e-19 97.8 189 34.9
Gohir.D09G135200 Gossypium hirsutum HOM05D002916 ORTHO05D003152 1.2e-18 97.4 192 35.4
Carub.0008s0814 Capsella rubella HOM05D002916 ORTHO05D003152 1.6e-18 97.1 188 35.6
Thhalv10021626m.g Eutrema salsugineum HOM05D002916 ORTHO05D003152 1.6e-18 97.1 192 33.3
Gorai.006G155100 Gossypium raimondii HOM05D002916 ORTHO05D003152 3.6e-18 95.9 192 34.9
Sabra16G0087700 Salix brachista HOM05D002916 ORTHO05D003152 4.7e-18 95.5 189 37.0
THA.LOC104816397 Tarenaya hassleriana HOM05D002916 ORTHO05D003152 4.7e-18 95.5 189 41.8
Haze_16636 Corylus avellana HOM05D002916 ORTHO05D003152 8.0e-18 94.7 189 36.0
Sabra16G0085600 Salix brachista HOM05D002916 ORTHO05D003152 1.0e-17 94.4 189 37.0
BcaC09g48115 Brassica carinata HOM05D002916 ORTHO05D003152 1.4e-17 94.0 188 30.9
Eucgr.K02033 Eucalyptus grandis HOM05D002916 ORTHO05D003152 1.4e-17 94.0 189 31.2
Gohir.A04G062400 Gossypium hirsutum HOM05D002916 ORTHO05D003152 1.4e-17 94.0 189 32.8
AT3G10120 Arabidopsis thaliana HOM05D002916 ORTHO05D003152 1.8e-17 93.6 188 31.9
Haze_16634 Corylus avellana HOM05D002916 ORTHO05D003152 1.8e-17 93.6 189 35.4
Hma1.2p1_0084F.1_g043850 Hydrangea macrophylla HOM05D002916 ORTHO05D003152 1.8e-17 93.6 175 39.4
Hma1.2p1_0820F.1_g223855 Hydrangea macrophylla HOM05D002916 ORTHO05D003152 1.8e-17 93.6 175 39.4
Solyc09g009810.1 Solanum lycopersicum HOM05D002916 ORTHO05D003152 1.8e-17 93.6 206 38.3
Gohir.D04G099400 Gossypium hirsutum HOM05D002916 ORTHO05D003152 2.3e-17 93.2 190 33.2
Gorai.009G402300 Gossypium raimondii HOM05D002916 ORTHO05D003152 2.3e-17 93.2 190 33.2
Cc06_g05820 Coffea canephora HOM05D002916 ORTHO05D003152 3.0e-17 92.8 191 32.5
Gohir.A11G003500 Gossypium hirsutum HOM05D002916 ORTHO05D003152 4.0e-17 92.4 173 35.3
Gohir.A09G139400 Gossypium hirsutum HOM05D002916 ORTHO05D003152 5.2e-17 92.0 143 37.8
BcaB04g21229 Brassica carinata HOM05D002916 ORTHO05D003152 6.7e-17 91.7 188 28.2
BolC1t05420H Brassica oleracea HOM05D002916 ORTHO05D003152 8.8e-17 91.3 188 30.3
Actinidia31270 Actinidia chinensis HOM05D002916 ORTHO05D003152 1.2e-16 90.9 178 34.8
CsaV3_6G040690 Cucumis sativus L. HOM05D002916 ORTHO05D003152 1.5e-16 90.5 195 34.4
BraA05t22688Z Brassica rapa HOM05D002916 ORTHO05D003152 2.0e-16 90.1 193 29.5
DCAR_013390 Daucus carota HOM05D002916 ORTHO05D003152 2.0e-16 90.1 190 36.8
BcaNung06240 Brassica carinata HOM05D002916 ORTHO05D003152 3.3e-16 89.4 193 28.5
A05p38970 Brassica napus HOM05D002916 ORTHO05D003152 3.3e-16 89.4 193 29.0
Sabra06G0164100 Salix brachista HOM05D002916 ORTHO05D003152 3.3e-16 89.4 157 39.5
C03p01810 Brassica napus HOM05D002916 ORTHO05D003152 4.4e-16 89.0 188 30.9
C05p58000 Brassica napus HOM05D002916 ORTHO05D003152 4.4e-16 89.0 193 29.0
MELO3C024547.2 Cucumis melo HOM05D002916 ORTHO05D003152 4.4e-16 89.0 194 34.0
Sp3g08400 Schrenkiella parvula HOM05D002916 ORTHO05D003152 4.4e-16 89.0 191 29.8
BolC5t34456H Brassica oleracea HOM05D002916 ORTHO05D003152 5.7e-16 88.6 188 28.7
Cfa001906 Carpinus fangiana HOM05D002916 ORTHO05D003152 5.7e-16 88.6 189 33.9
CiPaw.01G252200 Carya illinoinensis HOM05D002916 ORTHO05D003152 7.5e-16 88.2 190 35.3
Actinidia05426 Actinidia chinensis HOM05D002916 ORTHO05D003152 9.7e-16 87.8 192 32.8
AL3G21460 Arabidopsis lyrata HOM05D002916 ORTHO05D003152 9.7e-16 87.8 196 30.6
DCAR_007755 Daucus carota HOM05D002916 ORTHO05D003152 1.7e-15 87.0 192 33.3
Gohir.A05G000100 Gossypium hirsutum HOM05D002916 ORTHO05D003152 1.7e-15 87.0 192 32.8
BcaNung05911 Brassica carinata HOM05D002916 ORTHO05D003152 2.2e-15 86.7 189 30.2
A03p01480 Brassica napus HOM05D002916 ORTHO05D003152 2.2e-15 86.7 188 30.9
BraA03t09526Z Brassica rapa HOM05D002916 ORTHO05D003152 2.2e-15 86.7 188 30.9
Lsat_1_v5_gn_5_164861 Lactuca sativa HOM05D002916 ORTHO05D003152 2.2e-15 86.7 192 33.3
Thhalv10014801m.g Eutrema salsugineum HOM05D002916 ORTHO05D003152 2.8e-15 86.3 198 29.8
CARHR084600 Cardamine hirsuta HOM05D002916 ORTHO05D003152 3.7e-15 85.9 190 28.4
PSO339G4347 Papaver somniferum HOM05D002916 ORTHO05D003152 3.7e-15 85.9 189 31.7
Prupe.2G317800 Prunus persica HOM05D002916 ORTHO05D003152 3.7e-15 85.9 189 35.4
DCAR_013391 Daucus carota HOM05D002916 ORTHO05D003152 6.3e-15 85.1 192 33.3
DCAR_013392 Daucus carota HOM05D002916 ORTHO05D003152 6.3e-15 85.1 193 34.7
AL6G13470 Arabidopsis lyrata HOM05D002916 ORTHO05D003152 3.1e-14 82.8 197 29.9
PGR142G0380 Punica granatum HOM05D002916 ORTHO05D003152 4.1e-14 82.4 200 32.0
ClCG04G010060 Citrullus lanatus HOM05D002916 ORTHO05D003152 5.3e-14 82.0 187 35.8
DCAR_009166 Daucus carota HOM05D002916 ORTHO05D003152 7.0e-14 81.6 189 30.7
Migut.J01032 Erythranthe guttata HOM05D002916 ORTHO05D003152 7.0e-14 81.6 163 35.0
CANSAT64G0492 Cannabis sativa HOM05D002916 ORTHO05D003152 9.1e-14 81.3 204 38.2
Sed0018474 Sechium edule HOM05D002916 ORTHO05D003152 9.1e-14 81.3 188 29.8
AT5G03890 Arabidopsis thaliana HOM05D002916 ORTHO05D003152 1.6e-13 80.5 188 31.9
BcaC06g32092 Brassica carinata HOM05D002916 ORTHO05D003152 2.7e-13 79.7 184 29.9
Carub.0006s0284 Capsella rubella HOM05D002916 ORTHO05D003152 3.5e-13 79.3 197 32.0
Nitab4.5_0001712g0010 Nicotiana tabacum HOM05D002916 ORTHO05D003152 5.9e-13 78.6 137 35.8
A10p32230 Brassica napus HOM05D002916 ORTHO05D003152 2.2e-12 76.6 189 29.6
BraA10t45266Z Brassica rapa HOM05D002916 ORTHO05D003152 2.2e-12 76.6 189 29.6
AUR62006186 Chenopodium quinoa HOM05D002916 ORTHO05D003152 2.2e-12 76.6 189 31.7
ATR0078G023 Amborella trichopoda HOM05D002916 ORTHO05D003152 3.8e-12 75.9 197 31.5
BolC9t60038H Brassica oleracea HOM05D002916 ORTHO05D003152 6.5e-12 75.1 189 29.1
Sopen09g004570 Solanum pennellii HOM05D002916 ORTHO05D003152 6.5e-12 75.1 60 65.0
C09p73040 Brassica napus HOM05D002916 ORTHO05D003152 8.5e-12 74.7 189 29.6
DCAR_008976 Daucus carota HOM05D002916 ORTHO05D003152 8.5e-12 74.7 202 31.2
PGR004G1189 Punica granatum HOM05D002916 ORTHO05D003152 8.5e-12 74.7 188 28.7
CARHR209370 Cardamine hirsuta HOM05D002916 ORTHO05D003152 1.1e-11 74.3 189 29.1
Sabra12G0011500 Salix brachista HOM05D002916 ORTHO05D003152 1.5e-11 73.9 190 30.5
AUR62028520 Chenopodium quinoa HOM05D002916 ORTHO05D003152 4.2e-11 72.4 189 31.2
THA.LOC104826943 Tarenaya hassleriana HOM05D002916 ORTHO05D003152 5.5e-11 72.0 72 44.4
BolC3t12736H Brassica oleracea HOM05D002916 ORTHO05D003152 7.2e-11 71.6 145 29.0
Haze_00282 Corylus avellana HOM05D002916 ORTHO05D003152 1.6e-10 70.5 175 31.4
Nitab4.5_0000794g0180 Nicotiana tabacum HOM05D002916 ORTHO05D003152 1.6e-10 70.5 63 58.7
DCAR_020363 Daucus carota HOM05D002916 ORTHO05D003152 2.7e-10 69.7 202 28.7
Potri.012G022300 Populus trichocarpa HOM05D002916 ORTHO05D003152 3.6e-10 69.3 191 28.8
Cfa016172 Carpinus fangiana HOM05D002916 ORTHO05D003152 4.7e-10 68.9 175 31.4
Dinv29219 Davidia involucrata HOM05D002916 ORTHO05D003152 1.0e-09 67.8 189 30.2
SGA_v2.0_scaffold184G39965 Striga asiatica HOM05D002916 ORTHO05D003152 1.0e-09 67.8 130 33.8
A01p42040 Brassica napus HOM05D002916 ORTHO05D003152 1.8e-09 67.0 145 29.0
BraA01t04273Z Brassica rapa HOM05D002916 ORTHO05D003152 1.8e-09 67.0 145 29.0
Sp6g38840 Schrenkiella parvula HOM05D002916 ORTHO05D003152 1.8e-09 67.0 180 30.6
Aa31LG3G2650 Aethionema arabicum HOM05D002916 ORTHO05D003152 3.0e-09 66.2 211 30.8
BcaB01g05762 Brassica carinata HOM05D002916 ORTHO05D003152 3.0e-09 66.2 188 29.8
PSO384G2526 Papaver somniferum HOM05D002916 ORTHO05D003152 4.0e-09 65.9 191 31.4
Hma1.2p1_0094F.1_g047290 Hydrangea macrophylla HOM05D002916 ORTHO05D003152 5.2e-09 65.5 209 28.2
Gohir.D12G247400 Gossypium hirsutum HOM05D002916 ORTHO05D003152 6.8e-09 65.1 193 29.5
Medtr7g104680 Medicago truncatula HOM05D002916 ORTHO05D003152 6.8e-09 65.1 191 33.0
Rhsim03G0214600 Rhododendron simsii HOM05D001023 ORTHO05D000912 6.8e-09 65.1 198 29.8
Gorai.008G265400 Gossypium raimondii HOM05D002916 ORTHO05D003152 8.8e-09 64.7 178 29.8
TAR636G0145 Trochodendron aralioides HOM05D002916 ORTHO05D003152 1.5e-08 63.9 200 27.5
Ah.15g090860 Amaranthus hybridus HOM05D002916 ORTHO05D003152 2.0e-08 63.5 192 28.1
SalBow4G3036 Salvia bowleyana HOM05D002916 ORTHO05D003152 2.0e-08 63.5 125 33.6
Duzib084G1372 Durio zibethinus HOM05D002916 ORTHO05D003152 2.6e-08 63.2 180 30.0
RcHm_v2.0_Chr1g0382771 Rosa chinensis HOM05D002916 ORTHO05D003152 2.6e-08 63.2 203 29.6
CiPaw.06G042000 Carya illinoinensis HOM05D002916 ORTHO05D003152 3.4e-08 62.8 201 28.9
QL09p007312 Quercus lobata HOM05D002916 ORTHO05D003152 4.4e-08 62.4 195 28.7
TAR623G0367 Trochodendron aralioides HOM05D002916 ORTHO05D003152 4.4e-08 62.4 144 30.6
QL02p027552 Quercus lobata HOM05D002916 ORTHO05D003152 5.7e-08 62.0 179 29.1
SEGI_19412 Sequoiadendron giganteum HOM05D002916 ORTHO05D003152 5.7e-08 62.0 197 28.4
Haze_09193 Corylus avellana HOM05D002916 ORTHO05D003152 9.8e-08 61.2 159 30.2
CANSAT21G0001 Cannabis sativa HOM05D002916 ORTHO05D003152 1.3e-07 60.8 185 29.2
FAN01G1170 Fragaria x ananassa HOM05D002916 ORTHO05D003152 2.2e-07 60.1 179 29.6
Manes.01G042300 Manihot esculenta HOM05D002916 ORTHO05D003152 2.2e-07 60.1 200 28.5
Thecc.03G207400 Theobroma cacao HOM05D002916 ORTHO05D003152 2.2e-07 60.1 189 30.7
FAN10G3649 Fragaria x ananassa HOM05D002916 ORTHO05D003152 2.8e-07 59.7 179 29.6
Gohir.A12G246700 Gossypium hirsutum HOM05D002916 ORTHO05D003152 2.8e-07 59.7 193 29.0
FAN10G0037 Fragaria x ananassa HOM05D002916 ORTHO05D003152 3.7e-07 59.3 179 29.6
MBI04_g15577_MAGBIO Magnolia biondii HOM05D002916 ORTHO05D003152 3.7e-07 59.3 196 28.6
Actinidia34261 Actinidia chinensis HOM05D002916 ORTHO05D003152 8.3e-07 58.2 188 26.6
ClCG01G000110 Citrullus lanatus HOM05D002916 ORTHO05D003152 1.4e-06 57.4 185 26.5
FAN03G0202 Fragaria x ananassa HOM05D002916 ORTHO05D003152 1.4e-06 57.4 179 29.1
Psat5g073040 Pisum sativum HOM05D002916 ORTHO05D003152 1.4e-06 57.4 198 27.8
Sabra05G0140200 Salix brachista HOM05D002916 ORTHO05D003152 1.4e-06 57.4 79 39.2
Glyma.04G229700 Glycine max HOM05D002916 ORTHO05D003152 1.8e-06 57.0 163 28.8
Atru.chr12.2401 Acer truncatum HOM05D002916 ORTHO05D003152 2.4e-06 56.6 188 29.3
Sed0016396 Sechium edule HOM05D002916 ORTHO05D003152 2.4e-06 56.6 188 25.0
Potri.015G005700 Populus trichocarpa HOM05D002916 ORTHO05D003152 3.1e-06 56.2 189 36.0
TPR.G23310 Trifolium pratense HOM05D002916 ORTHO05D003152 3.1e-06 56.2 190 31.1
Glyma.06G135000 Glycine max HOM05D002916 ORTHO05D003152 4.1e-06 55.8 163 29.4
MELO3C005922.2 Cucumis melo HOM05D002916 ORTHO05D003152 7.0e-06 55.1 183 23.5
Glyma.07G050100 Glycine max HOM05D002255 ORTHO05D002288 9.1e-06 54.7 84 40.5


User provided reference genes

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