Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.1G92VG Arachis hypogaea HOM05D006436 ORTHO05D008011 8.4e-70 267.3 179 100.0
arahy.Tifrunner.gnm1.ann1.RB24L7 Arachis hypogaea HOM05D006436 ORTHO05D008011 8.1e-65 250.8 178 92.7
arahy.Tifrunner.gnm1.ann1.QIUU4Q Arachis hypogaea HOM05D006436 ORTHO05D008011 1.8e-64 249.6 178 92.7
arahy.Tifrunner.gnm1.ann1.7TMM1B Arachis hypogaea HOM05D006436 ORTHO05D008011 6.9e-64 247.7 178 89.3
Lalb_Chr16g0392121 Lupinus albus HOM05D006436 ORTHO05D008011 2.1e-60 236.1 178 89.3
LjContig00141g0009494 Lotus japonicus HOM05D006436 ORTHO05D008011 6.7e-59 231.1 175 86.9
Phvul.008G233200 Phaseolus vulgaris HOM05D006436 ORTHO05D008011 8.7e-59 230.7 177 87.0
Ca_18506_v3 Cicer arietinum L. HOM05D006436 ORTHO05D008011 1.9e-58 229.6 178 84.8
Psat2g043120 Pisum sativum HOM05D006436 ORTHO05D008011 1.9e-58 229.6 178 87.1
Thecc.09G311900 Theobroma cacao HOM05D006436 ORTHO05D008011 7.4e-58 227.6 177 86.4
Ca_05765_v3 Cicer arietinum L. HOM05D006436 ORTHO05D008011 9.6e-58 227.3 178 83.7
QL08p017466 Quercus lobata HOM05D006436 ORTHO05D008011 1.3e-57 226.9 174 81.6
Glyma.14G210900 Glycine max HOM05D006436 ORTHO05D008011 4.8e-57 224.9 177 85.3
Medtr5g077040 Medicago truncatula HOM05D006436 ORTHO05D008011 1.4e-56 223.4 177 85.9
VMungo0647G0400 Vigna mungo HOM05D006436 ORTHO05D008011 4.0e-56 221.9 177 84.7
MBI18_g05914_MAGBIO Magnolia biondii HOM05D006436 ORTHO05D008011 7.6e-55 217.6 176 82.4
Manes.02G134600 Manihot esculenta HOM05D006436 ORTHO05D008011 1.0e-54 217.2 176 63.6
TAR365G0111 Trochodendron aralioides HOM05D006436 ORTHO05D008011 2.2e-54 216.1 176 84.7
Eucgr.J01642 Eucalyptus grandis HOM05D006436 ORTHO05D008011 2.9e-54 215.7 178 80.9
Atru.chr1.2057 Acer truncatum HOM05D006436 ORTHO05D008011 3.8e-54 215.3 177 81.9
CiPaw.03G076800 Carya illinoinensis HOM05D006436 ORTHO05D008011 3.8e-54 215.3 174 85.6
Gohir.D07G105500 Gossypium hirsutum HOM05D006436 ORTHO05D008011 3.8e-54 215.3 175 84.0
Gorai.001G113600 Gossypium raimondii HOM05D006436 ORTHO05D008011 3.8e-54 215.3 175 84.0
RcHm_v2.0_Chr7g0218931 Rosa chinensis HOM05D006436 ORTHO05D008011 3.8e-54 215.3 177 82.5
Potri.001G225300 Populus trichocarpa HOM05D006436 ORTHO05D008011 5.0e-54 214.9 177 84.2
Prupe.3G143200 Prunus persica HOM05D006436 ORTHO05D008011 6.5e-54 214.5 177 85.3
AT5G37290 Arabidopsis thaliana HOM05D006436 ORTHO05D008011 8.4e-54 214.2 179 81.0
Gohir.A07G101500 Gossypium hirsutum HOM05D006436 ORTHO05D008011 1.1e-53 213.8 175 84.0
FAN08G3413 Fragaria x ananassa HOM05D006436 ORTHO05D008011 1.4e-53 213.4 177 61.6
Cpa.g.sc178.16 Carica papaya HOM05D006436 ORTHO05D008011 2.5e-53 212.6 174 83.9
HanXRQChr10g0309911 Helianthus annuus HOM05D006436 ORTHO05D008011 4.2e-53 211.8 177 82.5
CSS0031788 Camellia sinensis var. sinensis HOM05D006436 ORTHO05D008011 5.5e-53 211.5 177 82.5
GSVIVG01035239001 Vitis vinifera HOM05D006436 ORTHO05D008011 7.1e-53 211.1 176 84.1
FvH4_5g27560 Fragaria vesca HOM05D006436 ORTHO05D008011 9.3e-53 210.7 177 81.9
Cc07_g12850 Coffea canephora HOM05D006436 ORTHO05D008011 1.2e-52 210.3 176 83.5
Solyc04g014610.4 Solanum lycopersicum HOM05D006436 ORTHO05D008011 1.2e-52 210.3 174 82.8
Sopen04g006750 Solanum pennellii HOM05D006436 ORTHO05D008011 1.2e-52 210.3 174 82.8
Ciclev10022503m.g Citrus clementina HOM05D006436 ORTHO05D008011 1.6e-52 209.9 177 79.7
Hma1.2p1_0158F.1_g069740 Hydrangea macrophylla HOM05D006436 ORTHO05D008011 4.6e-52 208.4 177 83.1
MD09G1253300 Malus domestica HOM05D006436 ORTHO05D008011 4.6e-52 208.4 180 80.0
Carub.0007s3240 Capsella rubella HOM05D006436 ORTHO05D008011 6.1e-52 208.0 180 81.1
Lj4C253G7 Lonicera japonica HOM05D006436 ORTHO05D008011 7.9e-52 207.6 177 83.6
Nitab4.5_0005193g0010 Nicotiana tabacum HOM05D006436 ORTHO05D008011 7.9e-52 207.6 174 82.8
ECA234G4304 Erigeron canadensis HOM05D006436 ORTHO05D008011 1.0e-51 207.2 177 76.8
THA.LOC104823829 Tarenaya hassleriana HOM05D006436 ORTHO05D008011 1.0e-51 207.2 174 81.0
CAN.G268.8 Capsicum annuum HOM05D006436 ORTHO05D008011 2.3e-51 206.1 174 82.2
CARHR215800 Cardamine hirsuta HOM05D006436 ORTHO05D008011 2.3e-51 206.1 179 82.1
Oeu012529.1 Olea europaea HOM05D006436 ORTHO05D008011 2.3e-51 206.1 176 81.8
TWI77G0906 Tripterygium wilfordii HOM05D006436 ORTHO05D008011 2.3e-51 206.1 177 76.3
Thhalv10027956m.g Eutrema salsugineum HOM05D006436 ORTHO05D008011 3.0e-51 205.7 179 82.1
Rhsim11G0087100 Rhododendron simsii HOM05D006436 ORTHO05D008011 3.0e-51 205.7 173 83.8
Carub.0007s3243 Capsella rubella HOM05D006436 ORTHO05D008011 3.9e-51 205.3 176 81.2
Peaxi162Scf00442g00063 Petunia axillaris HOM05D006436 ORTHO05D008011 3.9e-51 205.3 174 81.0
FAN18G1736 Fragaria x ananassa HOM05D006436 ORTHO05D008011 5.1e-51 204.9 178 80.3
Aqoxy7G01157 Aquilegia oxysepala HOM05D006436 ORTHO05D008011 6.7e-51 204.5 174 79.3
Sp1g30670 Schrenkiella parvula HOM05D006436 ORTHO05D008011 1.5e-50 203.4 176 83.0
PGSC0003DMG400024110 Solanum tuberosum HOM05D006436 ORTHO05D008011 1.5e-50 203.4 174 81.6
MELO3C025074.2 Cucumis melo HOM05D006436 ORTHO05D008011 3.3e-50 202.2 175 82.3
AL7G45650 Arabidopsis lyrata HOM05D006436 ORTHO05D008011 4.3e-50 201.8 179 81.6
Sopen04g027290 Solanum pennellii HOM05D006436 ORTHO05D008011 5.7e-50 201.4 174 81.0
PGR042G2272 Punica granatum HOM05D006436 ORTHO05D008011 9.7e-50 200.7 176 80.1
BcaB03g13643 Brassica carinata HOM05D006436 ORTHO05D008011 1.3e-49 200.3 176 81.8
Sed0003659 Sechium edule HOM05D006436 ORTHO05D008011 1.6e-49 199.9 174 81.6
Solyc04g071330.4 Solanum lycopersicum HOM05D006436 ORTHO05D008011 2.2e-49 199.5 174 80.5
CsaV3_5G020600 Cucumis sativus L. HOM05D006436 ORTHO05D008011 4.8e-49 198.4 175 80.6
Dinv19074 Davidia involucrata HOM05D006436 ORTHO05D008011 6.3e-49 198.0 177 79.7
FAN18G0548 Fragaria x ananassa HOM05D006436 ORTHO05D008011 8.2e-49 197.6 200 53.0
Oeu039710.1 Olea europaea HOM05D006436 ORTHO05D008011 1.8e-48 196.4 176 79.5
ATR0706G244 Amborella trichopoda HOM05D006436 ORTHO05D008011 2.4e-48 196.1 176 80.7
BcaC01g04932 Brassica carinata HOM05D006436 ORTHO05D008011 2.4e-48 196.1 175 81.1
BraA03t11880Z Brassica rapa HOM05D006436 ORTHO05D008011 3.1e-48 195.7 176 59.7
Cfa007759 Carpinus fangiana HOM05D006436 ORTHO05D008011 6.9e-48 194.5 174 58.6
Lsat_1_v5_gn_5_79100 Lactuca sativa HOM05D006436 ORTHO05D008011 1.2e-47 193.7 174 79.3
Os11g0546200 Oryza sativa ssp. japonica HOM05D006436 ORTHO05D008011 1.5e-47 193.4 175 76.0
C03p31970 Brassica napus HOM05D006436 ORTHO05D008011 3.4e-47 192.2 176 58.5
BolC3t15539H Brassica oleracea HOM05D006436 ORTHO05D008011 3.4e-47 192.2 176 58.5
Zm00001eb188680 Zea mays HOM05D006436 ORTHO05D008011 3.4e-47 192.2 174 78.2
vmacro01486 Vaccinium macrocarpon HOM05D006436 ORTHO05D008011 4.5e-47 191.8 174 79.3
HPP92_004857 Vanilla planifolia HOM05D006436 ORTHO05D008011 1.3e-46 190.3 174 79.3
Sabra16G0133900 Salix brachista HOM05D006436 ORTHO05D008011 3.8e-46 188.7 250 44.8
CANSAT80G1957 Cannabis sativa HOM05D006436 ORTHO05D008011 1.9e-45 186.4 177 75.1
COL.COLO4_18608 Corchorus olitorius HOM05D006436 ORTHO05D008011 2.5e-45 186.0 155 85.8
MSTRG.12143 Avicennia marina HOM05D006436 ORTHO05D008011 3.2e-45 185.7 175 78.9
Migut.A01047 Erythranthe guttata HOM05D006436 ORTHO05D008011 1.0e-43 180.6 176 75.0
unitig_61.g26181 Utricularia gibba HOM05D006436 ORTHO05D008011 3.9e-43 178.7 192 50.0
PSO063G3804 Papaver somniferum HOM05D006436 ORTHO05D008011 8.8e-43 177.6 173 74.6
FvH4_5g26310 Fragaria vesca HOM05D006436 ORTHO05D008011 3.3e-42 175.6 179 52.5
Sc15g0000210 Simmondsia chinensis HOM05D006436 ORTHO05D008011 5.7e-42 174.9 179 52.5
SGA_v2.0_scaffold24G10269 Striga asiatica HOM05D006436 ORTHO05D008011 4.8e-41 171.8 204 61.3
SEGI_01802 Sequoiadendron giganteum HOM05D006436 ORTHO05D008011 2.0e-39 166.4 163 50.3
SMO347G0032 Selaginella moellendorffii HOM05D006436 ORTHO05D008011 3.4e-39 165.6 174 46.0
Dinv28234 Davidia involucrata HOM05D006436 ORTHO05D008011 4.5e-39 165.2 145 84.8
Aa31LG5G11620 Aethionema arabicum HOM05D006436 ORTHO05D008011 1.0e-38 164.1 195 68.2
Cc00_g04020 Coffea canephora HOM05D006436 ORTHO05D008011 1.3e-38 163.7 173 54.9
FAN13G2473 Fragaria x ananassa HOM05D006436 ORTHO05D008011 3.8e-38 162.2 173 51.4
SalBow6G7138 Salvia bowleyana HOM05D006436 ORTHO05D008011 3.8e-38 162.2 176 72.2
Hund24464 Selenicereus undatus HOM05D006436 ORTHO05D008011 3.8e-38 162.2 175 49.1
arahy.Tifrunner.gnm1.ann1.8KE236 Arachis hypogaea HOM05D006436 ORTHO05D008011 1.4e-37 160.2 218 48.2
ClCG01G008580 Citrullus lanatus HOM05D006436 ORTHO05D008011 4.2e-37 158.7 139 86.3
PGSC0003DMG400023565 Solanum tuberosum HOM05D006436 ORTHO05D008011 4.2e-37 158.7 178 51.1
DCAR_006063 Daucus carota HOM05D006436 ORTHO05D008011 5.5e-37 158.3 138 84.8
Mapoly0028s0068 Marchantia polymorpha HOM05D006436 ORTHO05D008011 1.6e-36 156.8 172 47.7
Duzib168G0581 Durio zibethinus HOM05D006436 ORTHO05D008011 2.7e-36 156.0 88 83.0
CDE11G1230 Ceratophyllum demersum HOM05D006436 ORTHO05D008011 1.4e-35 153.7 138 73.9
Nitab4.5_0012165g0010 Nicotiana tabacum HOM05D006436 ORTHO05D008011 4.4e-34 148.7 140 82.9
EL10Ac5g11211 Beta vulgaris HOM05D006436 ORTHO05D008011 9.7e-34 147.5 179 64.8
Nitab4.5_0000574g0240 Nicotiana tabacum HOM05D006436 ORTHO05D008011 9.7e-34 147.5 84 79.8
AUR62026125 Chenopodium quinoa HOM05D003339 ORTHO05D003847 9.1e-32 141.0 166 69.3
Ah.14g085550 Amaranthus hybridus HOM05D000477 ORTHO05D000338 1.2e-31 140.6 89 75.3
AUR62026126 Chenopodium quinoa HOM05D006436 ORTHO05D008011 1.5e-31 140.2 166 69.3
AUR62028451 Chenopodium quinoa HOM05D003339 ORTHO05D003847 2.0e-31 139.8 153 74.5
CSS0035006 Camellia sinensis var. sinensis HOM05D006436 ORTHO05D008011 3.8e-30 135.6 126 76.2
AUR62028452 Chenopodium quinoa HOM05D006436 ORTHO05D008011 1.1e-29 134.0 89 70.8
AagrBONN_evm.TU.Sc2ySwM_368.3316 Anthoceros agrestis HOM05D006436 ORTHO05D008011 1.0e-27 127.5 88 64.8
Haze_14313 Corylus avellana HOM05D006436 ORTHO05D008011 2.2e-25 119.8 119 53.8
Thhalv10028339m.g Eutrema salsugineum HOM05D006436 ORTHO05D008011 1.7e-22 110.2 177 40.1
Nn4g25693 Nelumbo nucifera HOM05D006436 ORTHO05D008011 4.2e-21 105.5 116 49.1
CSS0025543 Camellia sinensis var. sinensis HOM05D006436 ORTHO05D008011 5.5e-21 105.1 167 38.3
CBR_g12236 Chara braunii HOM05D006436 ORTHO05D008011 5.4e-16 88.6 114 40.4
Thecc.05G304200 Theobroma cacao HOM05D006436 ORTHO05D008011 9.4e-13 77.8 101 44.6
CsaV3_1G031100 Cucumis sativus L. HOM05D006436 ORTHO05D008011 2.0e-10 70.1 48 70.8
QL03p022571 Quercus lobata HOM05D006436 ORTHO05D008011 1.4e-08 63.9 36 77.8
Nitab4.5_0011078g0020 Nicotiana tabacum HOM05D006436 ORTHO05D008011 5.9e-07 58.5 36 72.2
CAN.G935.5 Capsicum annuum HOM05D006436 ORTHO05D008011 7.7e-07 58.2 36 75.0
Nitab4.5_0011078g0030 Nicotiana tabacum HOM05D006436 ORTHO05D008011 5.0e-06 55.5 36 66.7


User provided reference genes

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