Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.1FC84E Arachis hypogaea HOM05D004449 ORTHO05D005473 1.8e-99 365.9 183 100.0
arahy.Tifrunner.gnm1.ann1.IMVN0M Arachis hypogaea HOM05D004449 ORTHO05D005473 1.8e-99 365.9 183 100.0
arahy.Tifrunner.gnm1.ann1.H91IF8 Arachis hypogaea HOM05D004449 ORTHO05D005473 8.1e-60 234.2 125 92.0
arahy.Tifrunner.gnm1.ann1.L677I4 Arachis hypogaea HOM05D004449 ORTHO05D005473 1.8e-59 233.0 118 97.5
Medtr2g015010 Medicago truncatula HOM05D004449 ORTHO05D005473 2.0e-58 229.6 121 90.9
TPR.G11735 Trifolium pratense HOM05D004449 ORTHO05D005473 2.6e-58 229.2 121 91.7
Ca_00406_v3 Cicer arietinum L. HOM05D004449 ORTHO05D005473 3.4e-58 228.8 121 91.7
Lalb_Chr06g0172241 Lupinus albus HOM05D004449 ORTHO05D005473 8.3e-57 224.2 121 91.7
Lalb_Chr06g0172381 Lupinus albus HOM05D004449 ORTHO05D005473 8.3e-57 224.2 121 91.7
Lj1g0018712 Lotus japonicus HOM05D004449 ORTHO05D005473 7.1e-56 221.1 120 88.3
Glyma.13G153700 Glycine max HOM05D004449 ORTHO05D005473 6.0e-55 218.0 121 86.8
VMungo1309G2207 Vigna mungo HOM05D004449 ORTHO05D005473 1.3e-54 216.9 121 86.8
Phvul.009G260700 Phaseolus vulgaris HOM05D004449 ORTHO05D005473 2.3e-54 216.1 121 86.8
Glyma.02G054800 Glycine max HOM05D004449 ORTHO05D005473 5.1e-54 214.9 121 86.0
MD12G1036500 Malus domestica HOM05D004449 ORTHO05D005473 5.1e-54 214.9 121 84.3
QL07p038716 Quercus lobata HOM05D004449 ORTHO05D005473 1.1e-53 213.8 120 85.8
QL07p038966 Quercus lobata HOM05D004449 ORTHO05D005473 1.1e-53 213.8 120 85.8
Eucgr.A02663 Eucalyptus grandis HOM05D004449 ORTHO05D005473 1.5e-53 213.4 117 87.2
Rhsim07G0247400 Rhododendron simsii HOM05D004449 ORTHO05D005473 1.9e-53 213.0 121 85.1
TWI74G1045 Tripterygium wilfordii HOM05D004449 ORTHO05D005473 2.5e-53 212.6 121 86.0
vmacro21413 Vaccinium macrocarpon HOM05D004449 ORTHO05D005473 2.5e-53 212.6 121 84.3
ClCG08G005200 Citrullus lanatus HOM05D004449 ORTHO05D005473 4.3e-53 211.8 121 86.0
Potri.004G090500 Populus trichocarpa HOM05D004449 ORTHO05D005473 7.3e-53 211.1 121 82.6
Actinidia05427 Actinidia chinensis HOM05D004449 ORTHO05D005473 9.5e-53 210.7 121 83.5
MELO3C022184.2 Cucumis melo HOM05D004449 ORTHO05D005473 9.5e-53 210.7 121 86.0
Oeu056880.1 Olea europaea HOM05D004449 ORTHO05D005473 9.5e-53 210.7 122 83.6
Hma1.2p1_0084F.1_g043840 Hydrangea macrophylla HOM05D004449 ORTHO05D005473 1.2e-52 210.3 121 84.3
Hma1.2p1_0820F.1_g223850 Hydrangea macrophylla HOM05D004449 ORTHO05D005473 1.2e-52 210.3 121 84.3
MD14G1023300 Malus domestica HOM05D004449 ORTHO05D005473 1.2e-52 210.3 121 81.8
CSS0045328 Camellia sinensis var. sinensis HOM05D004449 ORTHO05D005473 1.6e-52 209.9 121 83.5
CiPaw.09G014500 Carya illinoinensis HOM05D004449 ORTHO05D005473 2.8e-52 209.1 123 82.1
Manes.08G025500 Manihot esculenta HOM05D004449 ORTHO05D005473 2.8e-52 209.1 116 86.2
FvH4_6g18790 Fragaria vesca HOM05D004449 ORTHO05D005473 3.6e-52 208.8 121 82.6
FAN14G0980 Fragaria x ananassa HOM05D004449 ORTHO05D005473 3.6e-52 208.8 121 82.6
GSVIVG01033847001 Vitis vinifera HOM05D004449 ORTHO05D005473 3.6e-52 208.8 121 83.5
Ciclev10012240m.g Citrus clementina HOM05D004449 ORTHO05D005473 6.2e-52 208.0 120 83.3
PGR042G0526 Punica granatum HOM05D004449 ORTHO05D005473 8.1e-52 207.6 119 83.2
RhsimUnG0066300 Rhododendron simsii HOM05D004449 ORTHO05D005473 8.1e-52 207.6 121 83.5
CANSAT64G1281 Cannabis sativa HOM05D004449 ORTHO05D005473 1.1e-51 207.2 121 84.3
ECA248G0038 Erigeron canadensis HOM05D004449 ORTHO05D005473 2.4e-51 206.1 117 82.9
THA.LOC104804908 Tarenaya hassleriana HOM05D004449 ORTHO05D005473 2.4e-51 206.1 120 83.3
TAR623G0834 Trochodendron aralioides HOM05D004449 ORTHO05D005473 2.4e-51 206.1 121 82.6
DCAR_006449 Daucus carota HOM05D004449 ORTHO05D005473 3.1e-51 205.7 117 82.9
FAN02G4498 Fragaria x ananassa HOM05D004449 ORTHO05D005473 3.1e-51 205.7 121 81.0
Lj2A137G26 Lonicera japonica HOM05D004449 ORTHO05D005473 4.0e-51 205.3 115 86.1
FAN05G3501 Fragaria x ananassa HOM05D004449 ORTHO05D005473 5.2e-51 204.9 121 81.0
Cfa016611 Carpinus fangiana HOM05D004449 ORTHO05D005473 6.8e-51 204.5 121 81.8
RcHm_v2.0_Chr3g0473801 Rosa chinensis HOM05D004449 ORTHO05D005473 6.8e-51 204.5 121 80.2
Sed0019477 Sechium edule HOM05D004449 ORTHO05D005473 8.9e-51 204.1 116 85.3
Gohir.D04G099600 Gossypium hirsutum HOM05D004449 ORTHO05D005473 1.2e-50 203.8 119 82.4
Gorai.009G402500 Gossypium raimondii HOM05D004449 ORTHO05D005473 1.2e-50 203.8 119 82.4
Cpa.g.sc999.2 Carica papaya HOM05D004449 ORTHO05D005473 1.5e-50 203.4 241 50.2
Lsat_1_v5_gn_8_77140 Lactuca sativa HOM05D004449 ORTHO05D005473 1.5e-50 203.4 120 80.8
Peaxi162Scf00858g00311 Petunia axillaris HOM05D004449 ORTHO05D005473 1.5e-50 203.4 115 85.2
Sopen05g034560 Solanum pennellii HOM05D004449 ORTHO05D005473 1.5e-50 203.4 121 81.8
Haze_19615 Corylus avellana HOM05D004449 ORTHO05D005473 2.0e-50 203.0 121 81.8
PSO384G3644 Papaver somniferum HOM05D004449 ORTHO05D005473 2.0e-50 203.0 120 79.2
Potri.017G124800 Populus trichocarpa HOM05D004449 ORTHO05D005473 2.0e-50 203.0 121 80.2
BcaB02g09374 Brassica carinata HOM05D004449 ORTHO05D005473 2.6e-50 202.6 116 83.6
BraA05t19914Z Brassica rapa HOM05D004449 ORTHO05D005473 2.6e-50 202.6 118 82.2
Cc06_g05800 Coffea canephora HOM05D004449 ORTHO05D005473 2.6e-50 202.6 121 81.0
FAN05G3651 Fragaria x ananassa HOM05D004449 ORTHO05D005473 2.6e-50 202.6 121 80.2
Gohir.A04G062600 Gossypium hirsutum HOM05D004449 ORTHO05D005473 2.6e-50 202.6 119 82.4
Sc02g0000280 Simmondsia chinensis HOM05D004449 ORTHO05D005473 2.6e-50 202.6 121 80.2
A05p09610 Brassica napus HOM05D004449 ORTHO05D005473 3.4e-50 202.2 118 82.2
Thhalv10016966m.g Eutrema salsugineum HOM05D004449 ORTHO05D005473 3.4e-50 202.2 118 81.4
CAN.G694.90 Capsicum annuum HOM05D004449 ORTHO05D005473 4.4e-50 201.8 121 80.2
PGSC0003DMG400023338 Solanum tuberosum HOM05D004449 ORTHO05D005473 4.4e-50 201.8 121 81.0
COL.COLO4_29729 Corchorus olitorius HOM05D004449 ORTHO05D005473 5.8e-50 201.4 112 86.6
Nitab4.5_0000071g0140 Nicotiana tabacum HOM05D004449 ORTHO05D005473 5.8e-50 201.4 115 81.7
Aqoxy1G00845 Aquilegia oxysepala HOM05D004449 ORTHO05D005473 7.6e-50 201.1 121 79.3
SGA_v2.0_scaffold75G24747 Striga asiatica HOM05D004449 ORTHO05D005473 7.6e-50 201.1 121 80.2
Nitab4.5_0004212g0050 Nicotiana tabacum HOM05D004449 ORTHO05D005473 9.9e-50 200.7 121 80.2
Nitab4.5_0006507g0050 Nicotiana tabacum HOM05D004449 ORTHO05D005473 9.9e-50 200.7 115 81.7
Solyc05g056150.4 Solanum lycopersicum HOM05D004449 ORTHO05D005473 9.9e-50 200.7 121 81.0
Aa31LG5G21350 Aethionema arabicum HOM05D004449 ORTHO05D005473 1.7e-49 199.9 119 79.8
Sp4g18450 Schrenkiella parvula HOM05D004449 ORTHO05D005473 1.7e-49 199.9 116 81.9
vmacro04352 Vaccinium macrocarpon HOM05D004449 ORTHO05D005473 1.7e-49 199.9 143 70.6
Ah.04g162190 Amaranthus hybridus HOM05D005123 ORTHO05D006532 2.2e-49 199.5 118 78.8
AUR62037092 Chenopodium quinoa HOM05D004449 ORTHO05D005473 2.2e-49 199.5 117 79.5
Nitab4.5_0000582g0210 Nicotiana tabacum HOM05D004449 ORTHO05D005473 2.2e-49 199.5 121 80.2
SalBow3G1569 Salvia bowleyana HOM05D004449 ORTHO05D005473 2.2e-49 199.5 121 78.5
Carub.0004s1799 Capsella rubella HOM05D004449 ORTHO05D005473 2.9e-49 199.1 115 82.6
SalBow4G0277 Salvia bowleyana HOM05D004449 ORTHO05D005473 2.9e-49 199.1 121 78.5
AT2G36230 Arabidopsis thaliana HOM05D004449 ORTHO05D005473 3.8e-49 198.7 117 80.3
MBI17_g08343_MAGBIO Magnolia biondii HOM05D004449 ORTHO05D005473 3.8e-49 198.7 121 80.2
BcaB01g03853 Brassica carinata HOM05D004449 ORTHO05D005473 4.9e-49 198.4 116 81.0
AL4G32330 Arabidopsis lyrata HOM05D004449 ORTHO05D005473 6.4e-49 198.0 115 81.7
C03p23440 Brassica napus HOM05D004449 ORTHO05D005473 6.4e-49 198.0 115 81.7
BolC3t14740H Brassica oleracea HOM05D004449 ORTHO05D005473 6.4e-49 198.0 115 81.7
Atru.chr8.1532 Acer truncatum HOM05D004449 ORTHO05D005473 8.4e-49 197.6 112 83.9
BraA03t11251Z Brassica rapa HOM05D004449 ORTHO05D005473 8.4e-49 197.6 115 81.7
Duzib093G2067 Durio zibethinus HOM05D004449 ORTHO05D005473 1.1e-48 197.2 119 78.2
EL10Ac8g19596 Beta vulgaris HOM05D004449 ORTHO05D005473 1.4e-48 196.8 119 76.5
CARHR130470 Cardamine hirsuta HOM05D004449 ORTHO05D005473 1.4e-48 196.8 119 79.0
MSTRG.19262 Avicennia marina HOM05D004449 ORTHO05D005473 1.9e-48 196.4 121 78.5
CiPaw.10G010000 Carya illinoinensis HOM05D004449 ORTHO05D005473 4.1e-48 195.3 121 77.7
Nn6g34893 Nelumbo nucifera HOM05D004449 ORTHO05D005473 4.1e-48 195.3 121 78.5
PSO339G4690 Papaver somniferum HOM05D004449 ORTHO05D005473 4.1e-48 195.3 120 75.0
AUR62036483 Chenopodium quinoa HOM05D004449 ORTHO05D005473 5.4e-48 194.9 117 77.8
HanXRQChr03g0063591 Helianthus annuus HOM05D004449 ORTHO05D005473 9.2e-48 194.1 117 79.5
A03p20000 Brassica napus HOM05D004449 ORTHO05D005473 1.2e-47 193.7 115 80.9
C04p11920 Brassica napus HOM05D004449 ORTHO05D005473 1.2e-47 193.7 117 81.2
BolC4t22839H Brassica oleracea HOM05D004449 ORTHO05D005473 1.2e-47 193.7 117 81.2
Atru.chr12.1330 Acer truncatum HOM05D004449 ORTHO05D005473 2.1e-47 193.0 112 82.1
BcaB02g09373 Brassica carinata HOM05D004449 ORTHO05D005473 2.1e-47 193.0 113 82.3
ATR1125G096 Amborella trichopoda HOM05D004449 ORTHO05D005473 3.5e-47 192.2 115 79.1
Migut.J01033 Erythranthe guttata HOM05D004449 ORTHO05D005473 3.5e-47 192.2 117 80.3
Zm00001eb020250 Zea mays HOM05D004449 ORTHO05D005473 1.3e-46 190.3 115 77.4
Zm00001eb287580 Zea mays HOM05D004449 ORTHO05D005473 8.7e-46 187.6 115 75.7
SHI27835 Sapria himalayana HOM05D004449 ORTHO05D005473 3.3e-45 185.7 116 73.3
vmacro04351 Vaccinium macrocarpon HOM05D004449 ORTHO05D005473 4.3e-45 185.3 155 64.5
CDE07G1047 Ceratophyllum demersum HOM05D004449 ORTHO05D005473 3.6e-44 182.2 113 75.2
Sabra17G0105100 Salix brachista HOM05D001392 ORTHO05D006407 1.8e-43 179.9 100 86.0
Cc11_g01850 Coffea canephora HOM05D004449 ORTHO05D005473 4.0e-43 178.7 120 73.3
CBR_g21822 Chara braunii HOM05D004449 ORTHO05D005473 2.6e-42 176.0 118 71.2
HPP92_001188 Vanilla planifolia HOM05D004449 ORTHO05D005473 4.4e-42 175.3 115 73.0
Pp3c12_22840 Physcomitrium patens HOM05D004449 ORTHO05D005473 4.9e-41 171.8 118 66.9
ClCG08G000960 Citrullus lanatus HOM05D004449 ORTHO05D005473 1.9e-40 169.9 169 55.0
SMO271G0065 Selaginella moellendorffii HOM05D004449 ORTHO05D005473 5.4e-40 168.3 117 67.5
AagrBONN_evm.TU.Sc2ySwM_344.169 Anthoceros agrestis HOM05D004449 ORTHO05D005473 3.5e-39 165.6 116 66.4
VMungo0647G1368 Vigna mungo HOM05D004449 ORTHO05D005473 3.5e-39 165.6 98 85.7
BcaC02g11727 Brassica carinata HOM05D004449 ORTHO05D005473 1.0e-38 164.1 98 81.6
Cre12.g495300 Chlamydomonas reinhardtii HOM05D004449 ORTHO05D005473 1.0e-38 164.1 112 68.8
BcaC02g11725 Brassica carinata HOM05D004449 ORTHO05D005473 2.5e-37 159.5 99 80.8
MCO11G008 Micromonas commoda HOM05D004449 ORTHO05D005473 1.8e-35 153.3 116 61.2
Mapoly0011s0027 Marchantia polymorpha HOM05D004449 ORTHO05D005473 3.1e-35 152.5 112 62.5
PRCOL_00002294 Prasinoderma coloniale HOM05D004449 ORTHO05D005473 5.3e-35 151.8 116 62.1
BcaC02g11729 Brassica carinata HOM05D004449 ORTHO05D005473 6.4e-33 144.8 126 63.5
SMO164G0227 Selaginella moellendorffii HOM05D004449 ORTHO05D005473 2.4e-32 142.9 116 61.2
TAR369G0358 Trochodendron aralioides HOM05D003904 ORTHO05D004378 3.1e-27 125.9 77 81.8
SMO308G0039 Selaginella moellendorffii HOM05D004449 ORTHO05D005473 5.3e-27 125.2 92 66.3
Prupe.7G109700 Prunus persica HOM05D004449 ORTHO05D005473 4.5e-26 122.1 65 86.2
SEGI_22783 Sequoiadendron giganteum HOM05D004449 ORTHO05D005473 4.6e-23 112.1 98 60.2
CsaV3_5G040040 Cucumis sativus L. HOM05D004449 ORTHO05D005473 7.9e-23 111.3 61 86.9
arahy.Tifrunner.gnm1.ann1.E2537D Arachis hypogaea HOM05D019151 ORTHO05D005473 1.3e-22 110.5 57 93.0
arahy.Tifrunner.gnm1.ann1.TG6NMP Arachis hypogaea HOM05D019151 ORTHO05D005473 1.3e-22 110.5 57 93.0
Dinv21204 Davidia involucrata HOM05D004449 ORTHO05D005473 5.1e-22 108.6 63 79.4
Cfa023382 Carpinus fangiana HOM05D004449 ORTHO05D005473 1.6e-20 103.6 158 38.0
unitig_8.g4306 Utricularia gibba HOM05D004449 ORTHO05D005473 1.2e-18 97.4 145 40.7
CDE04G3206 Ceratophyllum demersum HOM05D004449 ORTHO05D005473 2.7e-15 86.3 51 74.5
Thecc.05G089600 Theobroma cacao HOM05D004449 ORTHO05D005473 7.9e-15 84.7 46 84.8
RcHm_v2.0_Chr4g0393091 Rosa chinensis HOM05D004449 ORTHO05D005473 8.7e-14 81.3 46 80.4
Rhsim07G0247300 Rhododendron simsii HOM05D004449 ORTHO05D005473 2.5e-13 79.7 51 70.6
RhsimUnG0066500 Rhododendron simsii HOM05D004449 ORTHO05D005473 2.5e-13 79.7 51 70.6
CDE04G2184 Ceratophyllum demersum HOM05D004449 ORTHO05D000837 3.3e-13 79.3 106 41.5
Mapoly0100s0062 Marchantia polymorpha HOM05D004449 ORTHO05D005473 1.5e-10 70.5 54 51.9
RcHm_v2.0_Chr5g0027171 Rosa chinensis HOM05D004449 ORTHO05D005473 7.2e-08 61.6 36 75.0
Psat1g201080 Pisum sativum HOM05D004449 ORTHO05D005473 9.4e-08 61.2 29 96.6


User provided reference genes

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