Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.1EDB5Y Arachis hypogaea HOM05D003640 ORTHO05D004439 0.0e+00 1541.2 875 100.0
arahy.Tifrunner.gnm1.ann1.BT3HV7 Arachis hypogaea HOM05D003640 ORTHO05D004439 0.0e+00 1513.0 833 98.1
Glyma.06G134300 Glycine max HOM05D003640 ORTHO05D004439 0.0e+00 1164.4 840 76.7
VMungo1309G3003 Vigna mungo HOM05D003640 ORTHO05D004439 0.0e+00 1132.5 835 74.3
Phvul.009G050200 Phaseolus vulgaris HOM05D003640 ORTHO05D004439 0.0e+00 1130.2 838 75.9
Glyma.04G230800 Glycine max HOM05D003640 ORTHO05D004439 0.0e+00 1119.0 839 75.7
Lj1g0027227 Lotus japonicus HOM05D003640 ORTHO05D004439 0.0e+00 1112.8 837 71.9
Lalb_Chr08g0239801 Lupinus albus HOM05D003640 ORTHO05D004439 0.0e+00 1094.7 838 72.1
Ca_16756_v3 Cicer arietinum L. HOM05D003640 ORTHO05D004439 0.0e+00 1087.8 839 72.9
Lalb_Chr11g0067271 Lupinus albus HOM05D003640 ORTHO05D004439 1.2e-311 1072.8 841 71.1
Psat0s2807g0080 Pisum sativum HOM05D003640 ORTHO05D004439 6.6e-301 1037.3 838 70.8
Medtr3g092250 Medicago truncatula HOM05D003640 ORTHO05D004439 3.1e-295 1018.5 835 69.3
Lalb_Chr23g0271841 Lupinus albus HOM05D003640 ORTHO05D004439 1.1e-292 1010.0 834 69.8
QL93p0214_0013 Quercus lobata HOM05D003640 ORTHO05D004439 7.1e-271 937.6 841 63.6
QL09p007408 Quercus lobata HOM05D003640 ORTHO05D004439 2.7e-270 935.6 843 63.7
Prupe.2G317300 Prunus persica HOM05D003640 ORTHO05D004439 2.3e-269 932.6 845 63.6
Haze_00277 Corylus avellana HOM05D003640 ORTHO05D004439 7.3e-260 901.0 840 62.4
Dinv29226 Davidia involucrata HOM05D003640 ORTHO05D004439 2.0e-257 892.9 891 58.1
GSVIVG01038625001 Vitis vinifera HOM05D003640 ORTHO05D004439 1.4e-255 886.7 778 64.8
CiPaw.06G042300 Carya illinoinensis HOM05D003640 ORTHO05D004439 9.3e-255 884.0 849 61.0
MD01G1227300 Malus domestica HOM05D003640 ORTHO05D004439 6.0e-254 881.3 841 60.8
MD07G1297600 Malus domestica HOM05D003640 ORTHO05D004439 1.0e-253 880.6 841 60.9
Atru.chr12.2367 Acer truncatum HOM05D003640 ORTHO05D004439 2.5e-252 875.9 840 60.1
RcHm_v2.0_Chr1g0382521 Rosa chinensis HOM05D003640 ORTHO05D004439 6.4e-248 861.3 839 60.4
CSS0041088 Camellia sinensis var. sinensis HOM05D003640 ORTHO05D004439 5.4e-247 858.2 845 60.2
Duzib084G0116 Durio zibethinus HOM05D003640 ORTHO05D004439 2.7e-246 855.9 844 60.7
TWI39G1295 Tripterygium wilfordii HOM05D003640 ORTHO05D004439 2.3e-245 852.8 839 59.8
ClCG01G000140 Citrullus lanatus HOM05D003640 ORTHO05D004439 5.1e-245 851.7 855 58.4
MELO3C005925.2 Cucumis melo HOM05D003640 ORTHO05D004439 1.9e-244 849.7 850 58.0
Potri.012G023200 Populus trichocarpa HOM05D003640 ORTHO05D004439 2.8e-243 845.9 833 58.1
Actinidia34257 Actinidia chinensis HOM05D003640 ORTHO05D004439 1.5e-241 840.1 846 58.2
FAN01G0295 Fragaria x ananassa HOM05D003640 ORTHO05D004439 1.0e-240 837.4 838 58.5
Manes.01G041300 Manihot esculenta HOM05D003640 ORTHO05D004439 1.7e-240 836.6 833 60.0
Actinidia28276 Actinidia chinensis HOM05D003640 ORTHO05D004439 4.9e-240 835.1 843 58.4
Thecc.03G206700 Theobroma cacao HOM05D003640 ORTHO05D004439 6.5e-240 834.7 844 60.2
CsaV3_5G000020 Cucumis sativus L. HOM05D003640 ORTHO05D004439 1.1e-239 833.9 851 57.5
FAN10G0822 Fragaria x ananassa HOM05D003640 ORTHO05D004439 9.3e-239 830.9 844 58.2
Rhsim03G0214000 Rhododendron simsii HOM05D003640 ORTHO05D004439 1.6e-238 830.1 845 58.6
Nn1g00405 Nelumbo nucifera HOM05D003640 ORTHO05D004439 2.3e-237 826.2 854 56.2
FAN10G2795 Fragaria x ananassa HOM05D003640 ORTHO05D004439 1.1e-236 823.9 844 58.1
Dinv35374 Davidia involucrata HOM05D003640 ORTHO05D004439 3.3e-236 822.4 764 62.7
TAR375G0550 Trochodendron aralioides HOM05D003640 ORTHO05D004439 4.3e-236 822.0 839 57.0
CiPaw.05G202900 Carya illinoinensis HOM05D003640 ORTHO05D004439 9.6e-236 820.8 765 61.7
Potri.015G006700 Populus trichocarpa HOM05D003640 ORTHO05D004439 2.4e-234 816.2 834 56.5
Sed0021595 Sechium edule HOM05D003640 ORTHO05D004439 6.9e-234 814.7 849 55.7
FAN03G1455 Fragaria x ananassa HOM05D003640 ORTHO05D004439 1.3e-232 810.4 844 57.8
Sed0000635 Sechium edule HOM05D003640 ORTHO05D004439 7.1e-231 804.7 853 55.9
TAR636G3562 Trochodendron aralioides HOM05D003640 ORTHO05D004439 1.0e-229 800.8 837 57.2
vmacro06427 Vaccinium macrocarpon HOM05D003640 ORTHO05D004439 1.0e-229 800.8 891 53.8
TAR629G0154 Trochodendron aralioides HOM05D003640 ORTHO05D004439 6.7e-229 798.1 842 55.5
FvH4_7g32660 Fragaria vesca HOM05D003640 ORTHO05D004439 9.7e-228 794.3 801 58.3
Actinidia08687 Actinidia chinensis HOM05D003640 ORTHO05D004439 3.7e-227 792.3 768 60.5
Sabra12G0010700 Salix brachista HOM05D003640 ORTHO05D004439 6.5e-224 781.6 884 52.9
Sabra15G0004700 Salix brachista HOM05D003640 ORTHO05D004439 8.5e-224 781.2 837 54.7
CANSAT21G0645 Cannabis sativa HOM05D003640 ORTHO05D004439 1.6e-222 776.9 844 55.3
Nn3g18833 Nelumbo nucifera HOM05D003640 ORTHO05D004439 2.1e-222 776.5 786 56.9
Duzib068G1167 Durio zibethinus HOM05D003640 ORTHO05D004439 2.8e-219 766.1 841 55.5
Gorai.004G124100 Gossypium raimondii HOM05D003640 ORTHO05D004439 2.2e-216 756.5 846 55.9
Hund09700 Selenicereus undatus HOM05D003640 ORTHO05D004439 1.0e-213 747.7 819 54.2
Cc02_g00960 Coffea canephora HOM05D003640 ORTHO05D004439 3.9e-213 745.7 847 54.8
Gohir.D08G115200 Gossypium hirsutum HOM05D003640 ORTHO05D004439 5.1e-213 745.3 846 55.4
Gohir.A08G103800 Gossypium hirsutum HOM05D003640 ORTHO05D004439 2.8e-211 739.6 845 54.9
CSS0045837 Camellia sinensis var. sinensis HOM05D003640 ORTHO05D004439 4.8e-211 738.8 785 57.6
Duzib205G1657 Durio zibethinus HOM05D003640 ORTHO05D004439 9.1e-210 734.6 844 54.0
Solyc03g082490.4 Solanum lycopersicum HOM05D003640 ORTHO05D004439 4.8e-203 712.2 845 50.9
MBI12_g23004_MAGBIO Magnolia biondii HOM05D003640 ORTHO05D004439 8.2e-203 711.4 859 49.6
Hma1.2p1_0094F.1_g047240 Hydrangea macrophylla HOM05D003640 ORTHO05D004439 1.4e-202 710.7 866 51.0
PGR142G2086 Punica granatum HOM05D003640 ORTHO05D004439 5.3e-202 708.8 836 52.9
AUR62006022 Chenopodium quinoa HOM05D003640 ORTHO05D004439 1.2e-201 707.6 811 54.1
Gorai.008G265800 Gossypium raimondii HOM05D003640 ORTHO05D004439 4.5e-201 705.7 844 54.1
Gohir.D12G247700 Gossypium hirsutum HOM05D003640 ORTHO05D004439 5.9e-201 705.3 844 54.0
Oeu037965.1 Olea europaea HOM05D003640 ORTHO05D004439 7.2e-199 698.4 843 51.7
Gohir.A12G247000 Gossypium hirsutum HOM05D003640 ORTHO05D004439 6.1e-198 695.3 844 53.9
EL10Ac3g05201 Beta vulgaris HOM05D003640 ORTHO05D004439 2.3e-197 693.3 847 51.4
MSTRG.8618 Avicennia marina HOM05D003640 ORTHO05D004439 1.2e-193 681.0 856 51.8
Aqoxy7G00014 Aquilegia oxysepala HOM05D003640 ORTHO05D004439 1.7e-192 677.2 843 49.9
Hund21040 Selenicereus undatus HOM05D003640 ORTHO05D004439 2.2e-192 676.8 827 50.5
Nitab4.5_0001993g0040 Nicotiana tabacum HOM05D003640 ORTHO05D004439 9.4e-191 671.4 829 49.7
AUR62035604 Chenopodium quinoa HOM05D003640 ORTHO05D004439 8.0e-190 668.3 818 52.0
COL.COLO4_14351 Corchorus olitorius HOM05D003640 ORTHO05D004439 1.4e-189 667.5 842 50.4
Oeu055180.3 Olea europaea HOM05D003640 ORTHO05D004439 7.5e-188 661.8 880 50.5
Cpa.g.sc3.144 Carica papaya HOM05D003640 ORTHO05D004439 1.7e-187 660.6 685 57.2
Lj1C1026T8 Lonicera japonica HOM05D003640 ORTHO05D004439 1.6e-185 654.1 837 50.1
Gohir.D09G181300 Gossypium hirsutum HOM05D003640 ORTHO05D004439 3.5e-185 652.9 839 50.4
Migut.F00997 Erythranthe guttata HOM05D003640 ORTHO05D004439 4.5e-185 652.5 839 48.9
MSTRG.26989 Avicennia marina HOM05D003640 ORTHO05D004439 8.6e-184 648.3 839 50.8
THA.LOC104825162 Tarenaya hassleriana HOM05D003640 ORTHO05D004439 3.0e-181 639.8 787 52.9
DCAR_020359 Daucus carota HOM05D003640 ORTHO05D004439 6.3e-179 632.1 818 47.9
PSO135G0929 Papaver somniferum HOM05D003640 ORTHO05D004439 1.2e-177 627.9 853 49.0
Gorai.006G203300 Gossypium raimondii HOM05D003640 ORTHO05D004439 1.1e-175 621.3 839 50.2
Ah.07g204850 Amaranthus hybridus HOM05D003640 ORTHO05D004439 2.6e-172 610.1 846 48.8
TWI23G0563 Tripterygium wilfordii HOM05D003640 ORTHO05D004439 9.8e-172 608.2 623 57.1
SalBow6G0961 Salvia bowleyana HOM05D003640 ORTHO05D004439 3.7e-171 606.3 842 48.6
Oeu061023.1 Olea europaea HOM05D003640 ORTHO05D004439 4.9e-171 605.9 783 50.2
PSO384G0385 Papaver somniferum HOM05D003640 ORTHO05D004439 2.0e-169 600.5 853 47.4
SGA_v2.0_scaffold565G52945 Striga asiatica HOM05D003640 ORTHO05D004439 1.0e-168 598.2 782 48.5
Gohir.A09G186400 Gossypium hirsutum HOM05D003640 ORTHO05D004439 3.9e-168 596.3 834 47.5
Sopen03g022220 Solanum pennellii HOM05D003640 ORTHO05D004439 1.9e-167 594.0 719 50.8
ATR0580G072 Amborella trichopoda HOM05D003640 ORTHO05D004439 2.1e-166 590.5 872 45.3
Aa31sc289G20 Aethionema arabicum HOM05D003640 ORTHO05D004439 6.2e-166 589.0 753 49.1
ECA232G0587 Erigeron canadensis HOM05D003640 ORTHO05D004439 1.4e-165 587.8 717 51.0
SalBow2G2490 Salvia bowleyana HOM05D003640 ORTHO05D004439 2.4e-162 577.0 841 47.6
MSTRG.8540 Avicennia marina HOM05D003640 ORTHO05D004439 2.7e-161 573.5 827 46.4
DCAR_008967 Daucus carota HOM05D003640 ORTHO05D004439 3.3e-159 566.6 738 48.8
SGA_v2.0_scaffold136G35055 Striga asiatica HOM05D003640 ORTHO05D004439 1.6e-158 564.3 769 50.7
Sc19g0000670 Simmondsia chinensis HOM05D003640 ORTHO05D004439 2.8e-158 563.5 707 50.9
CAN.G358.147 Capsicum annuum HOM05D003640 ORTHO05D004439 1.7e-155 554.3 630 53.2
unitig_92.g28243 Utricularia gibba HOM05D003640 ORTHO05D004439 1.9e-151 540.8 731 48.3
HanXRQChr05g0139301 Helianthus annuus HOM05D003640 ORTHO05D004439 9.6e-151 538.5 831 44.5
Os08g0543600 Oryza sativa ssp. japonica HOM05D003640 ORTHO05D004439 3.4e-148 530.0 850 42.5
HanXRQChr15g0485391 Helianthus annuus HOM05D003640 ORTHO05D004439 7.8e-145 518.8 833 44.1
CARHR266770 Cardamine hirsuta HOM05D003640 ORTHO05D004439 3.9e-144 516.5 705 50.2
Lsat_1_v5_gn_9_50221 Lactuca sativa HOM05D003640 ORTHO05D004439 1.1e-143 515.0 715 46.4
arahy.Tifrunner.gnm1.ann1.3V8RAA Arachis hypogaea HOM05D003640 ORTHO05D004439 3.3e-143 513.5 429 70.4
Lsat_1_v5_gn_9_50181 Lactuca sativa HOM05D003640 ORTHO05D004439 1.2e-140 505.0 716 45.5
Carub.0008s1397 Capsella rubella HOM05D003640 ORTHO05D004439 5.8e-140 502.7 729 48.1
PSO063G3729 Papaver somniferum HOM05D003640 ORTHO05D004439 2.7e-137 493.8 838 41.4
AL8G28460 Arabidopsis lyrata HOM05D003640 ORTHO05D004439 3.5e-137 493.4 703 49.4
AT5G53620 Arabidopsis thaliana HOM05D003640 ORTHO05D004439 3.5e-137 493.4 704 48.7
CARHR266800 Cardamine hirsuta HOM05D003640 ORTHO05D004439 1.1e-135 488.4 723 47.9
Zm00001eb037420 Zea mays HOM05D003640 ORTHO05D004439 1.5e-135 488.0 851 41.7
HPP92_020943 Vanilla planifolia HOM05D003640 ORTHO05D008613 3.6e-134 483.4 843 42.9
Zm00001eb198460 Zea mays HOM05D003640 ORTHO05D004439 4.0e-133 479.9 851 41.2
Carub.0008s1383 Capsella rubella HOM05D003640 ORTHO05D004439 8.4e-131 472.2 702 47.0
Thhalv10012857m.g Eutrema salsugineum HOM05D003640 ORTHO05D004439 1.6e-129 468.0 717 46.6
Sp6g15750 Schrenkiella parvula HOM05D003640 ORTHO05D004439 5.5e-122 443.0 692 46.7
CDE04G2417 Ceratophyllum demersum HOM05D003640 ORTHO05D004439 5.1e-120 436.4 799 39.2
BcaB01g04251 Brassica carinata HOM05D003640 ORTHO05D004439 2.8e-118 430.6 710 45.6
C03p17530 Brassica napus HOM05D003640 ORTHO05D004439 1.3e-115 421.8 709 44.9
BolC3t14166H Brassica oleracea HOM05D003640 ORTHO05D004439 5.0e-115 419.9 699 44.9
A03p15040 Brassica napus HOM05D003640 ORTHO05D004439 3.0e-112 410.6 709 44.4
BraA03t10798Z Brassica rapa HOM05D003640 ORTHO05D004439 1.1e-111 408.7 699 44.5
Sp6g15760 Schrenkiella parvula HOM05D003640 ORTHO05D004439 1.1e-111 408.7 720 44.2
RcHm_v2.0_Chr1g0382561 Rosa chinensis HOM05D003640 ORTHO05D004439 2.8e-110 404.1 509 49.9
BcaB05g22060 Brassica carinata HOM05D003640 ORTHO05D004439 1.5e-103 381.7 692 43.8
QL09p007399 Quercus lobata HOM05D003640 ORTHO05D004439 1.2e-97 362.1 318 62.6
QL93p0214_0021 Quercus lobata HOM05D003640 ORTHO05D004439 1.2e-97 362.1 318 62.6
SHI02298 Sapria himalayana HOM05D003640 ORTHO05D004439 3.6e-97 360.5 413 51.8
RcHm_v2.0_Chr1g0382631 Rosa chinensis HOM05D003640 ORTHO05D004439 5.3e-85 320.1 380 51.3
BcaB01g04247 Brassica carinata HOM05D003640 ORTHO05D004439 8.8e-80 302.8 678 38.3
Mapoly0021s0043 Marchantia polymorpha HOM05D003640 ORTHO05D004439 7.0e-77 293.1 993 30.5
Pp3c14_13150 Physcomitrium patens HOM05D003640 ORTHO05D004439 3.0e-72 277.7 908 31.2
RcHm_v2.0_Chr1g0382611 Rosa chinensis HOM05D003640 ORTHO05D004439 4.9e-70 270.4 297 55.9
BcaC01g06262 Brassica carinata HOM05D003640 ORTHO05D004439 1.9e-66 258.5 709 34.4
Pp3c17_17470 Physcomitrium patens HOM05D003640 ORTHO05D004439 4.1e-61 240.7 891 29.7
unitig_37.g11993 Utricularia gibba HOM05D003640 ORTHO05D004439 6.2e-57 226.9 719 31.7
SEGI_36158 Sequoiadendron giganteum HOM05D003640 ORTHO05D004439 1.2e-49 202.6 350 40.6
CDE07G0792 Ceratophyllum demersum HOM05D003640 ORTHO05D004439 1.6e-49 202.2 659 30.2
RcHm_v2.0_Chr1g0382641 Rosa chinensis HOM05D003640 ORTHO05D004439 2.1e-41 175.3 158 63.3
C09p43570 Brassica napus HOM05D003640 ORTHO05D004439 5.8e-39 167.2 210 49.0
BraA03t10789Z Brassica rapa HOM05D003640 ORTHO05D004439 9.9e-39 166.4 172 57.6
A03p14940 Brassica napus HOM05D003640 ORTHO05D004439 1.7e-38 165.6 182 55.5
PSO782G5739 Papaver somniferum HOM05D003640 ORTHO05D004439 1.3e-35 156.0 156 53.8
HanXRQChr03g0061701 Helianthus annuus HOM05D003640 ORTHO05D004439 6.6e-27 127.1 173 45.7
COL.COLO4_06022 Corchorus olitorius HOM05D003057 ORTHO05D003904 1.6e-25 122.5 130 58.5
CDE04G2700 Ceratophyllum demersum HOM05D003640 ORTHO05D004439 3.1e-24 118.2 157 46.5
PSO017G5262 Papaver somniferum HOM05D003640 ORTHO05D004439 1.0e-19 103.2 186 40.3
HanXRQChr15g0479781 Helianthus annuus HOM05D003640 ORTHO05D004439 9.6e-18 96.7 133 42.9
Potri.016G069900 Populus trichocarpa HOM05D003640 ORTHO05D034990 9.6e-18 96.7 77 67.5
C09p43560 Brassica napus HOM05D003640 ORTHO05D004439 1.3e-17 96.3 105 58.1
HanXRQChr06g0170111 Helianthus annuus HOM05D003640 ORTHO05D004439 1.6e-17 95.9 121 44.6
BolC9t57239H Brassica oleracea HOM05D003640 ORTHO05D004439 4.8e-17 94.4 105 57.1
PSO170G6851 Papaver somniferum HOM05D003640 ORTHO05D004439 6.2e-17 94.0 162 43.2
Dinv06471 Davidia involucrata HOM05D003640 ORTHO05D004439 1.1e-16 93.2 120 51.7
arahy.Tifrunner.gnm1.ann1.JKFZ9B Arachis hypogaea HOM05D003640 ORTHO05D082470 4.9e-14 84.3 63 73.0
Dinv35373 Davidia involucrata HOM05D003640 ORTHO05D004439 4.9e-14 84.3 60 66.7
COL.COLO4_24960 Corchorus olitorius HOM05D003640 ORTHO05D004439 1.1e-13 83.2 113 51.3
C02p18030 Brassica napus HOM05D003640 ORTHO05D004439 8.7e-11 73.6 404 25.2
BolC2t07935H Brassica oleracea HOM05D003640 ORTHO05D004439 1.1e-10 73.2 338 26.9
CAN.G1387.1 Capsicum annuum HOM05D003640 ORTHO05D004439 2.5e-10 72.0 209 31.6
BolC9t57241H Brassica oleracea HOM05D003640 ORTHO05D004439 7.4e-10 70.5 52 67.3
AL8G28750 Arabidopsis lyrata HOM05D003640 ORTHO05D004439 2.8e-09 68.6 196 32.1
PGR042G3558 Punica granatum HOM05D000045 ORTHO05D000611 1.2e-07 63.2 111 36.9
CAN.G598.13 Capsicum annuum HOM05D003640 ORTHO05D004439 1.5e-07 62.8 198 30.3
MELO3C010660.2 Cucumis melo HOM05D003640 ORTHO05D004439 2.6e-07 62.0 45 66.7
CAN.G732.35 Capsicum annuum HOM05D003640 ORTHO05D004439 1.0e-06 60.1 177 32.2
CAN.G358.52 Capsicum annuum HOM05D003640 ORTHO05D004439 6.5e-06 57.4 107 36.4


User provided reference genes

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