Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.1E3WXN Arachis hypogaea HOM05D007223 ORTHO05D008932 1.3e-112 409.8 221 100.0
arahy.Tifrunner.gnm1.ann1.LBMC6N Arachis hypogaea HOM05D007223 ORTHO05D008932 1.4e-82 310.1 185 94.1
Phvul.003G145600 Phaseolus vulgaris HOM05D007223 ORTHO05D008932 9.8e-52 207.6 189 64.0
Lj4g0003272 Lotus japonicus HOM05D007223 ORTHO05D008932 9.1e-50 201.1 194 63.4
Manes.14G153900 Manihot esculenta HOM05D007223 ORTHO05D008932 1.6e-49 200.3 185 62.7
QL02p097776 Quercus lobata HOM05D007223 ORTHO05D008932 2.0e-49 199.9 187 62.6
Prupe.1G085900 Prunus persica HOM05D007223 ORTHO05D008932 2.7e-49 199.5 184 64.1
Lalb_Chr07g0180471 Lupinus albus HOM05D007223 ORTHO05D008932 1.7e-48 196.8 198 60.6
Atru.chr7.623 Acer truncatum HOM05D007223 ORTHO05D008932 6.5e-48 194.9 186 60.2
Gohir.D08G093900 Gossypium hirsutum HOM05D007223 ORTHO05D008932 8.5e-48 194.5 186 59.1
Gorai.004G099600 Gossypium raimondii HOM05D007223 ORTHO05D008932 8.5e-48 194.5 186 59.1
Ciclev10010470m.g Citrus clementina HOM05D007223 ORTHO05D008932 1.1e-47 194.1 176 60.8
Potri.006G166900 Populus trichocarpa HOM05D007223 ORTHO05D008932 1.1e-47 194.1 186 59.7
Thecc.09G177700 Theobroma cacao HOM05D007223 ORTHO05D008932 3.2e-47 192.6 190 59.5
Oeu042168.1 Olea europaea HOM05D007223 ORTHO05D008932 5.5e-47 191.8 192 60.4
Potri.018G092300 Populus trichocarpa HOM05D007223 ORTHO05D008932 1.2e-46 190.7 186 61.3
Gohir.A08G084300 Gossypium hirsutum HOM05D007223 ORTHO05D008932 2.1e-46 189.9 186 58.6
MD13G1253600 Malus domestica HOM05D007223 ORTHO05D008932 3.6e-46 189.1 182 61.0
TPR.G5371 Trifolium pratense HOM05D007223 ORTHO05D008932 3.6e-46 189.1 186 59.1
RcHm_v2.0_Chr4g0402441 Rosa chinensis HOM05D007223 ORTHO05D008932 4.7e-46 188.7 184 62.0
Medtr4g128070 Medicago truncatula HOM05D007223 ORTHO05D008932 6.1e-46 188.3 187 60.4
Sabra06G0129600 Salix brachista HOM05D007223 ORTHO05D008932 8.0e-46 188.0 184 58.7
Cfa013503 Carpinus fangiana HOM05D007223 ORTHO05D008932 1.0e-45 187.6 182 59.9
CSS0040203 Camellia sinensis var. sinensis HOM05D007223 ORTHO05D008932 1.4e-45 187.2 199 57.8
CiPaw.08G036200 Carya illinoinensis HOM05D007223 ORTHO05D008932 3.0e-45 186.0 185 61.1
GSVIVG01029215001 Vitis vinifera HOM05D007223 ORTHO05D008932 5.2e-45 185.3 176 58.5
Cpa.g.sc233.11 Carica papaya HOM05D007223 ORTHO05D008932 8.8e-45 184.5 187 54.0
FAN17G0481 Fragaria x ananassa HOM05D007223 ORTHO05D008932 2.0e-44 183.3 172 61.6
FAN22G1200 Fragaria x ananassa HOM05D007223 ORTHO05D008932 2.6e-44 183.0 172 61.6
FAN07G1685 Fragaria x ananassa HOM05D007223 ORTHO05D008932 3.4e-44 182.6 172 62.2
Dinv41246 Davidia involucrata HOM05D007223 ORTHO05D008932 4.4e-44 182.2 200 56.5
Duzib168G2276 Durio zibethinus HOM05D007223 ORTHO05D008932 4.4e-44 182.2 192 58.3
FAN12G3200 Fragaria x ananassa HOM05D007223 ORTHO05D008932 3.7e-43 179.1 182 59.9
AT5G57420 Arabidopsis thaliana HOM05D007223 ORTHO05D008932 4.9e-43 178.7 192 55.2
Psat4g012360 Pisum sativum HOM05D007223 ORTHO05D008932 6.3e-43 178.3 170 58.2
Cc06_g13230 Coffea canephora HOM05D007223 ORTHO05D008932 1.1e-42 177.6 193 56.0
FvH4_4g08200 Fragaria vesca HOM05D007223 ORTHO05D008932 1.4e-42 177.2 172 61.0
AL8G33400 Arabidopsis lyrata HOM05D007223 ORTHO05D008932 1.8e-42 176.8 192 56.8
CARHR271220 Cardamine hirsuta HOM05D007223 ORTHO05D008932 1.8e-42 176.8 196 56.1
THA.LOC104813522 Tarenaya hassleriana HOM05D007223 ORTHO05D008932 1.8e-42 176.8 190 55.3
TAR383G1061 Trochodendron aralioides HOM05D007223 ORTHO05D008932 1.8e-42 176.8 195 53.8
Duzib170G0975 Durio zibethinus HOM05D007223 ORTHO05D008932 3.1e-42 176.0 194 53.6
Dinv42721 Davidia involucrata HOM05D007223 ORTHO05D008932 5.4e-42 175.3 194 55.7
Dinv43380 Davidia involucrata HOM05D007223 ORTHO05D008932 5.4e-42 175.3 194 55.7
THA.LOC104817792 Tarenaya hassleriana HOM05D007223 ORTHO05D008932 5.4e-42 175.3 185 55.1
Thhalv10015874m.g Eutrema salsugineum HOM05D007223 ORTHO05D008932 1.2e-41 174.1 191 55.0
Lalb_Chr13g0300221 Lupinus albus HOM05D007223 ORTHO05D008932 1.2e-41 174.1 156 64.1
Sp6g19140 Schrenkiella parvula HOM05D007223 ORTHO05D008932 1.2e-41 174.1 190 55.8
TAR625G0650 Trochodendron aralioides HOM05D007223 ORTHO05D008932 1.6e-41 173.7 181 54.7
Nn8g40486 Nelumbo nucifera HOM05D007223 ORTHO05D008932 3.5e-41 172.6 182 56.0
C02p14240 Brassica napus HOM05D007223 ORTHO05D008932 5.9e-41 171.8 190 55.8
BolC2t07548H Brassica oleracea HOM05D007223 ORTHO05D008932 5.9e-41 171.8 190 56.3
Carub.0008s1794 Capsella rubella HOM05D007223 ORTHO05D008932 1.3e-40 170.6 193 54.9
BraA02t05920Z Brassica rapa HOM05D007223 ORTHO05D008932 1.7e-40 170.2 190 54.7
A02p08480 Brassica napus HOM05D007223 ORTHO05D008932 2.3e-40 169.9 190 54.7
Ca_21226_v3 Cicer arietinum L. HOM05D007223 ORTHO05D008932 5.0e-40 168.7 160 58.8
MSTRG.6217 Avicennia marina HOM05D007223 ORTHO05D008932 6.6e-40 168.3 204 52.0
Rhsim01G0004500 Rhododendron simsii HOM05D007223 ORTHO05D008932 6.6e-40 168.3 177 55.4
BcaC04g19969 Brassica carinata HOM05D007223 ORTHO05D008932 2.5e-39 166.4 150 63.3
CANSAT11G1503 Cannabis sativa HOM05D007223 ORTHO05D008932 2.5e-39 166.4 196 53.1
BcaB08g36098 Brassica carinata HOM05D007223 ORTHO05D008932 3.3e-39 166.0 154 63.0
VMungo1215G0104 Vigna mungo HOM05D007223 ORTHO05D008932 3.3e-39 166.0 166 59.0
Eucgr.C02329 Eucalyptus grandis HOM05D007223 ORTHO05D008932 7.3e-39 164.9 184 54.3
vmacro13125 Vaccinium macrocarpon HOM05D007223 ORTHO05D008932 1.6e-38 163.7 176 55.7
BcaB05g22346 Brassica carinata HOM05D007223 ORTHO05D008932 6.1e-38 161.8 203 51.2
Actinidia04146 Actinidia chinensis HOM05D007223 ORTHO05D008932 8.0e-38 161.4 185 55.1
Oeu004200.1 Olea europaea HOM05D007223 ORTHO05D008932 6.8e-37 158.3 165 57.0
Peaxi162Scf00231g00621 Petunia axillaris HOM05D007223 ORTHO05D008932 1.2e-36 157.5 127 63.8
PGR102G0813 Punica granatum HOM05D007223 ORTHO05D008932 2.6e-36 156.4 157 61.1
Haze_22095 Corylus avellana HOM05D007223 ORTHO05D008932 5.7e-36 155.2 161 56.5
Lsat_1_v5_gn_5_85421 Lactuca sativa HOM05D007223 ORTHO05D008932 5.7e-36 155.2 183 49.2
MSTRG.19707 Avicennia marina HOM05D007223 ORTHO05D008932 9.8e-36 154.5 131 64.9
HanXRQChr10g0308641 Helianthus annuus HOM05D007223 ORTHO05D008932 9.8e-36 154.5 177 55.4
SGA_v2.0_scaffold69G23253 Striga asiatica HOM05D007223 ORTHO05D008932 8.3e-35 151.4 131 60.3
SalBow6G4081 Salvia bowleyana HOM05D007223 ORTHO05D008932 3.2e-34 149.4 184 51.6
Sed0023808 Sechium edule HOM05D007223 ORTHO05D008932 4.1e-34 149.1 141 55.3
AUR62033216 Chenopodium quinoa HOM05D007223 ORTHO05D008932 5.4e-34 148.7 194 52.6
CsaV3_2G008380 Cucumis sativus L. HOM05D007223 ORTHO05D008932 2.0e-33 146.7 130 56.9
Os04g0653300 Oryza sativa ssp. japonica HOM05D007223 ORTHO05D008932 2.0e-33 146.7 145 54.5
MBI16_g39833_MAGBIO Magnolia biondii HOM05D007223 ORTHO05D008932 3.5e-33 146.0 153 55.6
DCAR_014699 Daucus carota HOM05D007223 ORTHO05D008932 5.9e-33 145.2 121 65.3
Hma1.2p1_1025F.1_g249310 Hydrangea macrophylla HOM05D007223 ORTHO05D008932 1.3e-32 144.1 214 47.7
PSO782G5105 Papaver somniferum HOM05D007223 ORTHO05D008932 5.0e-32 142.1 128 57.8
Solyc07g019450.3 Solanum lycopersicum HOM05D007223 ORTHO05D008932 5.0e-32 142.1 123 61.0
COL.COLO4_37700 Corchorus olitorius HOM05D007223 ORTHO05D008932 6.6e-32 141.7 190 48.9
Aa31LG3G13310 Aethionema arabicum HOM05D007223 ORTHO05D008932 8.6e-32 141.4 164 53.7
BcaC03g14153 Brassica carinata HOM05D007223 ORTHO05D008932 4.3e-31 139.0 171 53.2
ECA234G1236 Erigeron canadensis HOM05D007223 ORTHO05D008932 4.3e-31 139.0 126 57.9
C09p49290 Brassica napus HOM05D007223 ORTHO05D008932 2.1e-30 136.7 150 55.3
BolC9t57780H Brassica oleracea HOM05D007223 ORTHO05D008932 2.1e-30 136.7 150 55.3
ATR0580G272 Amborella trichopoda HOM05D007223 ORTHO05D008932 3.6e-30 136.0 181 43.1
BraA10t43566Z Brassica rapa HOM05D007223 ORTHO05D008932 8.0e-30 134.8 160 53.8
A10p14870 Brassica napus HOM05D007223 ORTHO05D008932 4.0e-29 132.5 134 60.4
SEGI_39293 Sequoiadendron giganteum HOM05D007223 ORTHO05D008932 3.7e-27 125.9 151 49.0
HPP92_017414 Vanilla planifolia HOM05D007223 ORTHO05D008932 3.7e-27 125.9 182 42.9
Migut.J01482 Erythranthe guttata HOM05D007223 ORTHO05D008932 4.9e-27 125.6 153 51.0
MBI14_g17369_MAGBIO Magnolia biondii HOM05D003252 ORTHO05D003640 1.2e-25 120.9 132 53.8
ClCG11G012160 Citrullus lanatus HOM05D007223 ORTHO05D008932 4.6e-25 119.0 102 60.8
Lj5C7T1 Lonicera japonica HOM05D007223 ORTHO05D008932 8.6e-24 114.8 163 47.2
MELO3C004026.2 Cucumis melo HOM05D007223 ORTHO05D008932 1.1e-23 114.4 111 53.2
Lj5C590T0 Lonicera japonica HOM05D007223 ORTHO05D008932 1.1e-23 114.4 163 47.2
EL10Ac8g18282 Beta vulgaris HOM05D007223 ORTHO05D008932 4.3e-23 112.5 124 50.0
PGSC0003DMG400043142 Solanum tuberosum HOM05D007223 ORTHO05D008932 3.6e-22 109.4 98 59.2
Glyma.20G083900 Glycine max HOM05D007223 ORTHO05D008932 3.5e-17 92.8 175 42.9
Zm00001eb432400 Zea mays HOM05D007223 ORTHO05D008932 3.5e-17 92.8 105 61.9
SEGI_19995 Sequoiadendron giganteum HOM05D007223 ORTHO05D008932 5.1e-16 89.0 128 41.4
Aqoxy7G03081 Aquilegia oxysepala HOM05D007223 ORTHO05D008932 6.6e-16 88.6 52 76.9
Mapoly0013s0010 Marchantia polymorpha HOM05D007223 ORTHO05D008932 6.6e-16 88.6 165 37.0
Nitab4.5_0001972g0010 Nicotiana tabacum HOM05D007223 ORTHO05D008932 8.6e-16 88.2 123 44.7
AagrBONN_evm.TU.Sc2ySwM_117.1187 Anthoceros agrestis HOM05D007223 ORTHO05D008932 5.6e-15 85.5 115 42.6
CBR_g19697 Chara braunii HOM05D000117 ORTHO05D008932 2.2e-11 73.6 109 44.0
CBR_g39692 Chara braunii HOM05D000117 ORTHO05D000070 8.4e-11 71.6 108 38.9
SMO170G0055 Selaginella moellendorffii HOM05D058183 ORTHO05D008932 1.3e-08 64.3 94 43.6
SMO141G0094 Selaginella moellendorffii HOM05D058183 ORTHO05D008932 1.7e-08 63.9 94 43.6
THA.LOC104814530 Tarenaya hassleriana HOM05D000117 ORTHO05D000070 7.3e-07 58.5 108 31.5
SalBow2G0935 Salvia bowleyana HOM05D000117 ORTHO05D000070 6.2e-06 55.5 124 29.8


User provided reference genes

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