Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.1A52WD Arachis hypogaea HOM05D005686 ORTHO05D006798 1.9e-110 402.5 204 100.0
arahy.Tifrunner.gnm1.ann1.G6JDG7 Arachis hypogaea HOM05D005686 ORTHO05D006798 4.3e-110 401.4 204 99.5
Glyma.01G001000 Glycine max HOM05D005686 ORTHO05D006798 4.0e-84 315.1 201 79.6
Lj2g0013423 Lotus japonicus HOM05D005686 ORTHO05D006798 2.4e-81 305.8 200 79.5
Glyma.08G359900 Glycine max HOM05D005686 ORTHO05D006798 1.7e-79 299.7 198 77.8
Ca_25642_v3 Cicer arietinum L. HOM05D005686 ORTHO05D006798 2.6e-75 285.8 203 72.4
Ciclev10009500m.g Citrus clementina HOM05D005686 ORTHO05D006798 6.4e-74 281.2 203 71.4
Gohir.A08G016700 Gossypium hirsutum HOM05D005686 ORTHO05D006798 7.1e-73 277.7 192 73.4
Thecc.09G202000 Theobroma cacao HOM05D005686 ORTHO05D006798 4.6e-72 275.0 193 73.1
MD04G1000800 Malus domestica HOM05D005686 ORTHO05D006798 7.8e-72 274.2 197 69.0
RcHm_v2.0_Chr4g0384721 Rosa chinensis HOM05D005686 ORTHO05D006798 7.8e-72 274.2 202 70.8
Psat1g052000 Pisum sativum HOM05D005686 ORTHO05D006798 3.0e-71 272.3 196 70.9
Cfa012874 Carpinus fangiana HOM05D005686 ORTHO05D006798 8.7e-71 270.8 195 69.7
FvH4_4g00120 Fragaria vesca HOM05D005686 ORTHO05D006798 1.9e-70 269.6 206 69.4
Gorai.004G024000 Gossypium raimondii HOM05D005686 ORTHO05D006798 1.9e-70 269.6 186 72.6
ClCG03G011610 Citrullus lanatus HOM05D005686 ORTHO05D006798 3.3e-70 268.9 205 66.8
Gohir.D08G027100 Gossypium hirsutum HOM05D005686 ORTHO05D006798 7.3e-70 267.7 186 72.0
MSTRG.5975 Avicennia marina HOM05D005686 ORTHO05D006798 9.6e-70 267.3 198 69.2
TWI32G0912 Tripterygium wilfordii HOM05D005686 ORTHO05D006798 9.6e-70 267.3 192 69.3
CiPaw.08G000400 Carya illinoinensis HOM05D005686 ORTHO05D006798 1.3e-69 266.9 204 69.1
FAN17G2251 Fragaria x ananassa HOM05D005686 ORTHO05D006798 2.8e-69 265.8 206 68.4
Manes.18G145300 Manihot esculenta HOM05D005686 ORTHO05D006798 1.1e-68 263.8 197 68.5
FAN22G1914 Fragaria x ananassa HOM05D005686 ORTHO05D006798 1.4e-68 263.5 206 68.4
COL.COLO4_09003 Corchorus olitorius HOM05D005686 ORTHO05D006798 2.4e-68 262.7 195 68.2
Migut.J00862 Erythranthe guttata HOM05D005686 ORTHO05D006798 3.1e-68 262.3 201 65.7
Nitab4.5_0000019g0070 Nicotiana tabacum HOM05D005686 ORTHO05D006798 5.3e-68 261.5 197 68.5
Cpa.g.sc46.112 Carica papaya HOM05D005686 ORTHO05D006798 1.2e-67 260.4 194 67.0
Potri.006G080900 Populus trichocarpa HOM05D005686 ORTHO05D006798 1.2e-67 260.4 200 69.5
Hma1.2p1_0391F.1_g142870 Hydrangea macrophylla HOM05D005686 ORTHO05D006798 1.5e-67 260.0 192 66.7
Sed0010250 Sechium edule HOM05D005686 ORTHO05D006798 1.5e-67 260.0 204 64.2
Atru.chr7.1021 Acer truncatum HOM05D005686 ORTHO05D006798 2.0e-67 259.6 200 67.0
GSVIVG01034255001 Vitis vinifera HOM05D005686 ORTHO05D006798 2.6e-67 259.2 193 67.4
Lalb_Chr24g0401731 Lupinus albus HOM05D005686 ORTHO05D006798 5.8e-67 258.1 194 67.5
Potri.018G151500 Populus trichocarpa HOM05D005686 ORTHO05D006798 7.6e-67 257.7 194 68.6
Nitab4.5_0004788g0010 Nicotiana tabacum HOM05D005686 ORTHO05D006798 9.9e-67 257.3 197 67.5
Eucgr.C02152 Eucalyptus grandis HOM05D005686 ORTHO05D006798 1.3e-66 256.9 197 65.0
TAR383G0056 Trochodendron aralioides HOM05D005686 ORTHO05D006798 2.2e-66 256.1 189 67.2
CSS0027001 Camellia sinensis var. sinensis HOM05D005686 ORTHO05D006798 8.4e-66 254.2 204 64.7
CSS0031712 Camellia sinensis var. sinensis HOM05D005686 ORTHO05D006798 1.9e-65 253.1 204 64.7
Oeu000268.1 Olea europaea HOM05D005686 ORTHO05D006798 1.9e-65 253.1 199 63.8
PGR142G1985 Punica granatum HOM05D005686 ORTHO05D006798 4.2e-65 251.9 196 66.8
Sc23g0005700 Simmondsia chinensis HOM05D005686 ORTHO05D006798 2.7e-64 249.2 191 64.4
ECA240G1888 Erigeron canadensis HOM05D005686 ORTHO05D006798 1.0e-63 247.3 202 63.9
PSO063G6522 Papaver somniferum HOM05D005686 ORTHO05D006798 1.0e-63 247.3 189 63.5
CANSAT80G2136 Cannabis sativa HOM05D005686 ORTHO05D006798 2.3e-63 246.1 203 63.1
Cc06_g23520 Coffea canephora HOM05D005686 ORTHO05D006798 6.6e-63 244.6 203 64.5
PSO170G1777 Papaver somniferum HOM05D005686 ORTHO05D006798 6.6e-63 244.6 188 63.3
QL11p005743 Quercus lobata HOM05D005686 ORTHO05D006798 6.6e-63 244.6 249 54.6
Lsat_1_v5_gn_7_57081 Lactuca sativa HOM05D005686 ORTHO05D006798 1.5e-62 243.4 202 62.4
Medtr6g093220 Medicago truncatula HOM05D005686 ORTHO05D006798 2.5e-62 242.7 188 69.7
ATR0626G256 Amborella trichopoda HOM05D005686 ORTHO05D006798 3.3e-62 242.3 192 63.5
vmacro20730 Vaccinium macrocarpon HOM05D005686 ORTHO05D006798 4.3e-62 241.9 246 56.1
HanXRQChr03g0066651 Helianthus annuus HOM05D005686 ORTHO05D006798 5.6e-62 241.5 193 63.7
EL10Ac2g03596 Beta vulgaris HOM05D005686 ORTHO05D006798 7.4e-62 241.1 191 64.4
SGA_v2.0_scaffold21G09585 Striga asiatica HOM05D005686 ORTHO05D006798 2.1e-61 239.6 224 57.1
DCAR_014582 Daucus carota HOM05D005686 ORTHO05D006798 4.8e-61 238.4 195 64.1
unitig_699.g19254 Utricularia gibba HOM05D005686 ORTHO05D006798 1.1e-60 237.3 201 60.2
THA.LOC104811843 Tarenaya hassleriana HOM05D005686 ORTHO05D006798 1.4e-60 236.9 197 61.4
HPP92_017040 Vanilla planifolia HOM05D005686 ORTHO05D006798 1.8e-60 236.5 190 61.6
MELO3C010013.2 Cucumis melo HOM05D005686 ORTHO05D006798 3.1e-60 235.7 278 50.0
AL8G34220 Arabidopsis lyrata HOM05D005686 ORTHO05D006798 5.3e-60 235.0 194 61.9
Aqoxy7G02566 Aquilegia oxysepala HOM05D005686 ORTHO05D006798 6.9e-60 234.6 204 61.8
HanXRQChr09g0245301 Helianthus annuus HOM05D005686 ORTHO05D006798 1.2e-59 233.8 202 60.9
Sp6g19800 Schrenkiella parvula HOM05D005686 ORTHO05D006798 2.6e-59 232.6 194 61.9
CARHR271940 Cardamine hirsuta HOM05D005686 ORTHO05D006798 4.5e-59 231.9 195 62.1
AUR62020755 Chenopodium quinoa HOM05D005686 ORTHO05D006798 4.5e-59 231.9 192 60.4
Thhalv10014732m.g Eutrema salsugineum HOM05D005686 ORTHO05D006798 4.5e-59 231.9 194 60.8
BcaB08g36164 Brassica carinata HOM05D005686 ORTHO05D006798 9.9e-59 230.7 194 60.3
A10p16070 Brassica napus HOM05D005686 ORTHO05D006798 9.9e-59 230.7 194 60.8
BraA03t10552Z Brassica rapa HOM05D005686 ORTHO05D006798 9.9e-59 230.7 194 60.8
BraA10t43622Z Brassica rapa HOM05D005686 ORTHO05D006798 9.9e-59 230.7 194 60.8
Carub.0008s1867 Capsella rubella HOM05D005686 ORTHO05D006798 1.7e-58 229.9 197 61.9
AT5G58110 Arabidopsis thaliana HOM05D005686 ORTHO05D006798 2.2e-58 229.6 197 61.4
Peaxi162Scf00322g00914 Petunia axillaris HOM05D005686 ORTHO05D006798 2.2e-58 229.6 209 59.3
BolC3t13898H Brassica oleracea HOM05D005686 ORTHO05D006798 4.9e-58 228.4 194 61.3
Duzib170G0214 Durio zibethinus HOM05D005686 ORTHO05D006798 6.4e-58 228.0 195 62.6
BcaC04g19906 Brassica carinata HOM05D005686 ORTHO05D006798 8.4e-58 227.6 194 59.8
AUR62027958 Chenopodium quinoa HOM05D005686 ORTHO05D006798 1.1e-57 227.3 191 58.6
A03p12400 Brassica napus HOM05D005686 ORTHO05D006798 1.4e-57 226.9 194 60.8
C03p14560 Brassica napus HOM05D005686 ORTHO05D006798 1.4e-57 226.9 195 61.5
BolC9t57855H Brassica oleracea HOM05D005686 ORTHO05D006798 2.4e-57 226.1 194 59.8
CDE04G0009 Ceratophyllum demersum HOM05D005686 ORTHO05D006798 2.4e-57 226.1 190 59.5
BcaB01g04476 Brassica carinata HOM05D005686 ORTHO05D006798 3.2e-57 225.7 194 59.8
TPR.G21341 Trifolium pratense HOM05D005686 ORTHO05D006798 5.5e-57 224.9 158 73.4
Zm00001eb232010 Zea mays HOM05D005686 ORTHO05D006798 5.5e-57 224.9 190 57.9
Os06g0703800 Oryza sativa ssp. japonica HOM05D005686 ORTHO05D006798 7.1e-57 224.6 190 58.4
Aa31LG3G13950 Aethionema arabicum HOM05D005244 ORTHO05D006539 4.6e-56 221.9 193 58.0
C09p50020 Brassica napus HOM05D005686 ORTHO05D006798 7.9e-56 221.1 186 60.8
Os02g0139100 Oryza sativa ssp. japonica HOM05D005686 ORTHO05D006798 2.3e-55 219.5 193 57.5
vmacro20894 Vaccinium macrocarpon HOM05D005686 ORTHO05D006798 4.3e-54 215.3 304 46.1
Oeu000956.1 Olea europaea HOM05D005686 ORTHO05D006798 5.6e-54 214.9 201 57.7
FAN12G3064 Fragaria x ananassa HOM05D005686 ORTHO05D006798 1.6e-53 213.4 161 68.3
CsaV3_1G044180 Cucumis sativus L. HOM05D005686 ORTHO05D006798 2.1e-53 213.0 151 70.2
Oeu018307.1 Olea europaea HOM05D005686 ORTHO05D006798 2.1e-53 213.0 201 59.2
Prupe.1G000800 Prunus persica HOM05D005686 ORTHO05D006798 2.1e-53 213.0 231 55.0
BcaB01g04553 Brassica carinata HOM05D005686 ORTHO05D006798 1.1e-52 210.7 199 56.3
unitig_899.g15184 Utricularia gibba HOM05D000036 ORTHO05D000095 1.0e-50 204.1 184 58.2
Dinv26497 Davidia involucrata HOM05D005686 ORTHO05D006798 2.9e-50 202.6 157 67.5
CAN.G357.2 Capsicum annuum HOM05D005686 ORTHO05D006798 9.3e-49 197.6 143 68.5
Rhsim01G0102500 Rhododendron simsii HOM05D005686 ORTHO05D006798 3.5e-48 195.7 347 39.5
Gorai.009G341500 Gossypium raimondii HOM05D005686 ORTHO05D006798 1.8e-44 183.3 152 61.8
Gohir.D05G318500 Gossypium hirsutum HOM05D005686 ORTHO05D006798 1.2e-43 180.6 148 63.5
Mapoly0062s0098 Marchantia polymorpha HOM05D005686 ORTHO05D006798 7.6e-43 177.9 192 47.9
Pp3c5_4250 Physcomitrium patens HOM05D005686 ORTHO05D006798 1.0e-42 177.6 204 45.6
Hma1.2p1_0394F.1_g143240 Hydrangea macrophylla HOM05D005686 ORTHO05D006798 8.5e-42 174.5 124 71.0
VMungo0464G1575 Vigna mungo HOM05D005686 ORTHO05D006798 2.1e-40 169.9 248 45.2
MBI13_g46510_MAGBIO Magnolia biondii HOM05D005686 ORTHO05D006798 2.5e-38 162.9 117 67.5
Pp3c16_2550 Physcomitrium patens HOM05D005686 ORTHO05D006798 7.4e-38 161.4 199 43.2
SMO164G0027 Selaginella moellendorffii HOM05D005686 ORTHO05D006798 1.2e-35 154.1 190 46.3
Actinidia07538 Actinidia chinensis HOM05D005686 ORTHO05D006798 1.1e-33 147.5 109 65.1
SEGI_10084 Sequoiadendron giganteum HOM05D005686 ORTHO05D006798 2.1e-32 143.3 147 50.3
Hund19347 Selenicereus undatus HOM05D005686 ORTHO05D006798 3.6e-32 142.5 195 44.6
Oeu021239.2 Olea europaea HOM05D005686 ORTHO05D006798 1.1e-30 137.5 202 44.1
Nn8g41269 Nelumbo nucifera HOM05D005686 ORTHO05D006798 5.7e-30 135.2 101 66.3
Haze_21245 Corylus avellana HOM05D005686 ORTHO05D006798 2.2e-26 123.2 97 64.9
Lju50E1T0 Lonicera japonica HOM05D005686 ORTHO05D006798 2.9e-26 122.9 89 66.3
CDE07G1048 Ceratophyllum demersum HOM05D005686 ORTHO05D006798 1.2e-24 117.5 122 53.3
MBI13_g08742_MAGBIO Magnolia biondii HOM05D005686 ORTHO05D006798 8.8e-23 111.3 136 47.8
arahy.Tifrunner.gnm1.ann1.U8PUWG Arachis hypogaea HOM05D005611 ORTHO05D006852 3.5e-19 99.4 56 91.1
arahy.Tifrunner.gnm1.ann1.11LFFZ Arachis hypogaea HOM05D005686 ORTHO05D006798 5.9e-19 98.6 57 87.7
SalBow6G6154 Salvia bowleyana HOM05D005686 ORTHO05D006798 1.7e-18 97.1 76 59.2
MBI13_g33582_MAGBIO Magnolia biondii HOM05D005686 ORTHO05D006798 5.0e-18 95.5 76 61.8
ClCG04G012860 Citrullus lanatus HOM05D005686 ORTHO05D006798 2.5e-17 93.2 94 55.3
SMO146G0036 Selaginella moellendorffii HOM05D005686 ORTHO05D006798 6.1e-16 88.6 147 34.0
MCO14G409 Micromonas commoda HOM05D005686 ORTHO05D006798 5.2e-15 85.5 203 31.0
FAN26G0690 Fragaria x ananassa HOM05D005686 ORTHO05D006798 3.1e-12 76.3 89 44.9
Cre07.g321850 Chlamydomonas reinhardtii HOM05D005686 ORTHO05D006798 9.1e-12 74.7 211 29.9
FvH4_1g23212 Fragaria vesca HOM05D005686 ORTHO05D006798 2.0e-11 73.6 90 42.2
FAN25G3234 Fragaria x ananassa HOM05D005686 ORTHO05D006798 2.7e-11 73.2 89 41.6
FAN17G2013 Fragaria x ananassa HOM05D005686 ORTHO05D006798 1.7e-10 70.5 89 41.6
SGA_v2.0_scaffold25G11073 Striga asiatica HOM05D005686 ORTHO05D006798 6.5e-10 68.6 102 43.1
FvH4_7g03690 Fragaria vesca HOM05D005686 ORTHO05D006798 8.5e-10 68.2 57 54.4
FAN01G2054 Fragaria x ananassa HOM05D005686 ORTHO05D006798 7.2e-09 65.1 86 44.2
FAN07G2653 Fragaria x ananassa HOM05D005686 ORTHO05D006798 9.4e-09 64.7 52 51.9
BolC8t47587H Brassica oleracea HOM05D005686 ORTHO05D006798 6.1e-08 62.0 55 54.5
BcaC07g37307 Brassica carinata HOM05D005686 ORTHO05D006798 3.0e-07 59.7 53 54.7
C08p07420 Brassica napus HOM05D005686 ORTHO05D006798 3.0e-07 59.7 53 54.7
FAN23G2196 Fragaria x ananassa HOM05D005686 ORTHO05D006798 5.2e-07 58.9 49 53.1


User provided reference genes

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