Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.14SSX1 Arachis hypogaea HOM05D001920 ORTHO05D005408 0.0e+00 1083.9 551 100.0
arahy.Tifrunner.gnm1.ann1.UJN8CA Arachis hypogaea HOM05D001920 ORTHO05D005408 4.4e-303 1043.9 568 94.0
arahy.Tifrunner.gnm1.ann1.9L6JUF Arachis hypogaea HOM05D001920 ORTHO05D005408 3.0e-299 1031.2 538 97.2
arahy.Tifrunner.gnm1.ann1.RZJX0Q Arachis hypogaea HOM05D001920 ORTHO05D005408 1.9e-298 1028.5 538 97.0
Lalb_Chr22g0356171 Lupinus albus HOM05D001920 ORTHO05D005408 2.2e-278 961.8 548 90.1
Ca_03647_v3 Cicer arietinum L. HOM05D001920 ORTHO05D005408 1.5e-274 949.1 535 90.1
Phvul.003G267800 Phaseolus vulgaris HOM05D001920 ORTHO05D005408 3.3e-274 948.0 531 90.2
Medtr8g074590 Medicago truncatula HOM05D001920 ORTHO05D005408 1.6e-273 945.7 535 90.1
VMungo0251G2102 Vigna mungo HOM05D001920 ORTHO05D005408 1.4e-272 942.6 528 89.8
Glyma.16G120600 Glycine max HOM05D001920 ORTHO05D005408 4.4e-271 937.6 516 91.1
Psat4g103240 Pisum sativum HOM05D001920 ORTHO05D005408 1.3e-270 936.0 528 90.2
Glyma.02G043400 Glycine max HOM05D001920 ORTHO05D005408 2.2e-270 935.3 529 89.4
Lj4g0027878 Lotus japonicus HOM05D001920 ORTHO05D005408 2.4e-269 931.8 519 90.0
CiPaw.15G036600 Carya illinoinensis HOM05D001920 ORTHO05D005408 8.1e-265 916.8 540 85.6
Cfa017979 Carpinus fangiana HOM05D001920 ORTHO05D005408 1.8e-264 915.6 532 86.1
Atru.chr7.1932 Acer truncatum HOM05D001920 ORTHO05D005408 3.1e-264 914.8 539 86.3
Dinv12437 Davidia involucrata HOM05D001920 ORTHO05D005408 4.5e-263 911.0 541 85.4
Haze_18151 Corylus avellana HOM05D001920 ORTHO05D005408 5.8e-263 910.6 562 82.6
Duzib187G1306 Durio zibethinus HOM05D001920 ORTHO05D005408 3.8e-262 907.9 533 86.1
Ciclev10007867m.g Citrus clementina HOM05D001920 ORTHO05D005408 4.9e-262 907.5 542 85.1
COL.COLO4_21094 Corchorus olitorius HOM05D001920 ORTHO05D005408 4.2e-261 904.4 546 84.2
Potri.006G225500 Populus trichocarpa HOM05D001920 ORTHO05D005408 9.3e-261 903.3 534 85.4
Gohir.D08G268800 Gossypium hirsutum HOM05D001920 ORTHO05D005408 1.3e-259 899.4 540 84.4
Gohir.A08G247700 Gossypium hirsutum HOM05D001920 ORTHO05D005408 1.8e-259 899.0 540 84.3
Gorai.004G286500 Gossypium raimondii HOM05D001920 ORTHO05D005408 2.3e-259 898.7 540 84.3
CsaV3_4G035800 Cucumis sativus L. HOM05D001920 ORTHO05D005408 3.9e-259 897.9 536 84.3
CANSAT11G1997 Cannabis sativa HOM05D001920 ORTHO05D005408 5.1e-259 897.5 537 84.7
Sabra06G0174400 Salix brachista HOM05D001920 ORTHO05D005408 5.1e-259 897.5 535 84.9
CSS0047067 Camellia sinensis var. sinensis HOM05D001920 ORTHO05D005408 1.6e-257 892.5 529 84.9
PGR044G1731 Punica granatum HOM05D001920 ORTHO05D005408 2.1e-257 892.1 539 83.5
GSVIVG01035413001 Vitis vinifera HOM05D001920 ORTHO05D005408 2.1e-257 892.1 511 87.7
Peaxi162Scf00694g00218 Petunia axillaris HOM05D001920 ORTHO05D005408 4.8e-257 891.0 534 84.3
Thecc.09G057700 Theobroma cacao HOM05D001920 ORTHO05D005408 1.4e-256 889.4 539 84.0
Manes.16G082600 Manihot esculenta HOM05D001920 ORTHO05D005408 2.4e-256 888.6 518 86.3
ClCG05G018020 Citrullus lanatus HOM05D001920 ORTHO05D005408 5.3e-256 887.5 536 83.8
HanXRQChr10g0309741 Helianthus annuus HOM05D001920 ORTHO05D005408 1.2e-255 886.3 545 82.4
Lsat_1_v5_gn_4_73880 Lactuca sativa HOM05D001920 ORTHO05D005408 1.2e-255 886.3 540 83.1
Prupe.1G408800 Prunus persica HOM05D001920 ORTHO05D005408 2.0e-255 885.6 521 85.6
CAN.G219.68 Capsicum annuum HOM05D001920 ORTHO05D005408 3.4e-255 884.8 538 83.3
Migut.D00410 Erythranthe guttata HOM05D001920 ORTHO05D005408 4.5e-255 884.4 542 82.3
vmacro07770 Vaccinium macrocarpon HOM05D001920 ORTHO05D005408 1.0e-254 883.2 545 81.8
HanXRQChr12g0359101 Helianthus annuus HOM05D001920 ORTHO05D005408 1.7e-254 882.5 536 83.4
MD08G1065800 Malus domestica HOM05D001920 ORTHO05D005408 2.2e-254 882.1 550 81.3
MD15G1055600 Malus domestica HOM05D001920 ORTHO05D005408 4.9e-254 880.9 555 80.5
Solyc01g087650.4 Solanum lycopersicum HOM05D001920 ORTHO05D005408 1.1e-253 879.8 534 81.8
TWI63G1659 Tripterygium wilfordii HOM05D001920 ORTHO05D005408 1.1e-253 879.8 539 82.7
RhsimUnG0209800 Rhododendron simsii HOM05D001920 ORTHO05D005408 5.5e-253 877.5 542 81.7
Nitab4.5_0004053g0020 Nicotiana tabacum HOM05D001920 ORTHO05D005408 9.3e-253 876.7 544 82.4
TWI34G1596 Tripterygium wilfordii HOM05D001920 ORTHO05D005408 2.1e-252 875.5 522 84.3
Sopen01g034610 Solanum pennellii HOM05D001920 ORTHO05D005408 3.5e-252 874.8 534 81.5
PGSC0003DMG400006851 Solanum tuberosum HOM05D001920 ORTHO05D005408 3.5e-252 874.8 533 82.4
Sp6g31610 Schrenkiella parvula HOM05D001920 ORTHO05D005408 6.0e-252 874.0 544 81.1
CARHR201150 Cardamine hirsuta HOM05D001920 ORTHO05D005408 7.9e-252 873.6 533 82.9
EL10Ac8g19267 Beta vulgaris HOM05D001920 ORTHO05D005408 1.3e-251 872.8 558 79.2
A02p01310 Brassica napus HOM05D001920 ORTHO05D005408 1.3e-251 872.8 542 81.9
BraA02t05109Z Brassica rapa HOM05D001920 ORTHO05D005408 1.3e-251 872.8 542 81.9
SalBow4G2367 Salvia bowleyana HOM05D001920 ORTHO05D005408 2.3e-251 872.1 545 81.8
Hund19436 Selenicereus undatus HOM05D001920 ORTHO05D005408 2.3e-251 872.1 542 81.7
BcaC03g13404 Brassica carinata HOM05D001920 ORTHO05D005408 3.0e-251 871.7 542 81.9
C02p05530 Brassica napus HOM05D001920 ORTHO05D005408 3.0e-251 871.7 542 81.9
BolC2t06498H Brassica oleracea HOM05D001920 ORTHO05D005408 3.0e-251 871.7 542 81.9
QL02p000680 Quercus lobata HOM05D001920 ORTHO05D005408 3.0e-251 871.7 548 81.8
Thhalv10013117m.g Eutrema salsugineum HOM05D001920 ORTHO05D005408 5.1e-251 870.9 544 81.6
RcHm_v2.0_Chr6g0311281 Rosa chinensis HOM05D001920 ORTHO05D005408 1.5e-250 869.4 540 81.7
AL6G22770 Arabidopsis lyrata HOM05D001920 ORTHO05D005408 1.9e-250 869.0 533 82.4
TAR626G1364 Trochodendron aralioides HOM05D001920 ORTHO05D005408 3.3e-250 868.2 542 80.8
Actinidia29326 Actinidia chinensis HOM05D001920 ORTHO05D005408 2.1e-249 865.5 551 80.6
Carub.0006s1052 Capsella rubella HOM05D001920 ORTHO05D005408 2.8e-249 865.1 530 81.9
Cc08_g10930 Coffea canephora HOM05D001920 ORTHO05D005408 4.8e-249 864.4 541 80.2
C03p06150 Brassica napus HOM05D001920 ORTHO05D005408 1.1e-248 863.2 532 82.3
FAN20G0594 Fragaria x ananassa HOM05D001920 ORTHO05D005408 3.1e-248 861.7 530 82.1
Lj7A258G43 Lonicera japonica HOM05D001920 ORTHO05D005408 4.1e-248 861.3 542 81.7
THA.LOC104799157 Tarenaya hassleriana HOM05D001920 ORTHO05D005408 4.1e-248 861.3 555 79.5
MSTRG.14078 Avicennia marina HOM05D001920 ORTHO05D005408 6.9e-248 860.5 533 80.9
BolC3t13123H Brassica oleracea HOM05D001920 ORTHO05D005408 1.2e-247 859.8 532 81.8
FvH4_2g31510 Fragaria vesca HOM05D001920 ORTHO05D005408 1.5e-247 859.4 543 80.7
FAN27G2437 Fragaria x ananassa HOM05D001920 ORTHO05D005408 3.4e-247 858.2 549 79.8
Ah.09g228460 Amaranthus hybridus HOM05D001920 ORTHO05D005408 6.5e-246 854.0 544 79.4
AUR62031243 Chenopodium quinoa HOM05D001920 ORTHO05D005408 1.1e-245 853.2 554 78.2
Sc23g0005750 Simmondsia chinensis HOM05D001920 ORTHO05D005408 1.9e-245 852.4 544 79.6
Aa31LG3G15240 Aethionema arabicum HOM05D001920 ORTHO05D005408 7.2e-245 850.5 542 79.3
A03p05350 Brassica napus HOM05D001920 ORTHO05D005408 3.6e-244 848.2 513 82.1
FAN24G1332 Fragaria x ananassa HOM05D001920 ORTHO05D005408 3.6e-244 848.2 553 79.0
AUR62027456 Chenopodium quinoa HOM05D001920 ORTHO05D005408 1.0e-243 846.7 534 79.4
BraA03t09873Z Brassica rapa HOM05D001920 ORTHO05D005408 3.9e-243 844.7 550 78.2
FAN15G2558 Fragaria x ananassa HOM05D001920 ORTHO05D005408 8.7e-243 843.6 553 78.7
Aqoxy6G00323 Aquilegia oxysepala HOM05D001920 ORTHO05D005408 4.3e-242 841.3 545 77.6
PSO210G2773 Papaver somniferum HOM05D001920 ORTHO05D005408 1.3e-241 839.7 538 78.3
RhsimUnG0018300 Rhododendron simsii HOM05D001920 ORTHO05D005408 2.8e-241 838.6 542 79.0
PSO210G7360 Papaver somniferum HOM05D001920 ORTHO05D005408 8.2e-241 837.0 545 77.6
MELO3C016885.2 Cucumis melo HOM05D001920 ORTHO05D005408 2.4e-240 835.5 536 80.2
DCAR_003139 Daucus carota HOM05D001920 ORTHO05D005408 4.1e-240 834.7 547 77.7
Migut.E01586 Erythranthe guttata HOM05D001920 ORTHO05D005408 2.6e-239 832.0 530 78.7
CDE05G1481 Ceratophyllum demersum HOM05D001920 ORTHO05D005408 9.4e-237 823.5 528 77.3
ECA234G0290 Erigeron canadensis HOM05D001920 ORTHO05D005408 4.6e-236 821.2 550 76.9
BcaB01g05437 Brassica carinata HOM05D001920 ORTHO05D005408 3.0e-235 818.5 500 81.4
BcaNung02634 Brassica carinata HOM05D001920 ORTHO05D005408 2.8e-233 812.0 548 77.2
AT5G11980 Arabidopsis thaliana HOM05D001920 ORTHO05D005408 3.6e-228 795.0 470 84.9
Nn8g38775 Nelumbo nucifera HOM05D001920 ORTHO05D005408 6.1e-228 794.3 470 84.5
unitig_8.g5056 Utricularia gibba HOM05D001920 ORTHO05D005408 3.9e-227 791.6 534 74.9
Actinidia03557 Actinidia chinensis HOM05D001920 ORTHO05D005408 2.2e-225 785.8 468 84.0
ATR0686G037 Amborella trichopoda HOM05D001920 ORTHO05D005408 3.7e-225 785.0 549 73.4
Cpa.g.sc222.19 Carica papaya HOM05D001920 ORTHO05D005408 1.4e-219 766.5 545 75.2
Eucgr.C03063 Eucalyptus grandis HOM05D001920 ORTHO05D005408 1.8e-219 766.1 501 78.0
Hma1.2p1_0077F.1_g039730 Hydrangea macrophylla HOM05D001920 ORTHO05D005408 1.4e-216 756.5 474 81.2
HPP92_005529 Vanilla planifolia HOM05D001920 ORTHO05D005408 2.4e-216 755.7 548 70.4
TPR.G14979 Trifolium pratense HOM05D001920 ORTHO05D005408 2.7e-215 752.3 405 93.1
Os12g0538300 Oryza sativa ssp. japonica HOM05D001920 ORTHO05D005408 5.0e-214 748.0 512 71.7
Zm00001eb006920 Zea mays HOM05D001920 ORTHO05D005408 1.9e-213 746.1 507 71.8
Zm00001eb401360 Zea mays HOM05D001920 ORTHO05D005408 1.0e-211 740.3 509 71.3
Sed0005880 Sechium edule HOM05D001920 ORTHO05D005408 4.8e-209 731.5 423 85.8
Sed0005137 Sechium edule HOM05D001920 ORTHO05D005408 1.7e-206 723.0 425 84.2
Hma1.2p1_0196F.1_g084800 Hydrangea macrophylla HOM05D001920 ORTHO05D005408 5.9e-199 698.0 510 72.4
MBI18_g38862_MAGBIO Magnolia biondii HOM05D001920 ORTHO05D005408 1.2e-194 683.7 538 66.7
Mapoly0087s0038 Marchantia polymorpha HOM05D001920 ORTHO05D005408 2.6e-194 682.6 525 66.1
Nitab4.5_0000707g0110 Nicotiana tabacum HOM05D001920 ORTHO05D005408 4.7e-188 661.8 545 66.8
SGA_v2.0_scaffold169G38703 Striga asiatica HOM05D001920 ORTHO05D005408 6.4e-185 651.4 523 65.8
Pp3c10_11790 Physcomitrium patens HOM05D001920 ORTHO05D005408 1.1e-184 650.6 508 63.0
SHI18715 Sapria himalayana HOM05D001920 ORTHO05D005408 1.2e-180 637.1 457 70.0
CBR_g34170 Chara braunii HOM05D001920 ORTHO05D005408 2.8e-180 636.0 518 60.4
Oeu003998.1 Olea europaea HOM05D001920 ORTHO05D005408 1.2e-175 620.5 529 65.2
SMO356G0672 Selaginella moellendorffii HOM05D001920 ORTHO05D005408 1.5e-173 613.6 515 61.0
Lj7C259T3 Lonicera japonica HOM05D001920 ORTHO05D005408 7.3e-165 584.7 318 90.3
MBI05_g36626_MAGBIO Magnolia biondii HOM05D001920 ORTHO05D005408 7.8e-159 564.7 541 58.0
RcHm_v2.0_Chr4g0442191 Rosa chinensis HOM05D001920 ORTHO05D005408 2.8e-156 556.2 523 57.2
Lj7C264G4 Lonicera japonica HOM05D001920 ORTHO05D005408 4.0e-155 552.4 480 61.9
Pp3c2_14420 Physcomitrium patens HOM05D001920 ORTHO05D005408 8.4e-153 544.7 436 61.2
SGA_v2.0_scaffold163G38013 Striga asiatica HOM05D001920 ORTHO05D005408 2.4e-152 543.1 353 80.5
FvH4_4g33140 Fragaria vesca HOM05D001920 ORTHO05D005408 2.1e-151 540.0 495 57.6
FAN12G3829 Fragaria x ananassa HOM05D001920 ORTHO05D005408 4.6e-151 538.9 495 57.4
FAN07G1923 Fragaria x ananassa HOM05D001920 ORTHO05D005408 5.1e-150 535.4 494 57.1
AagrBONN_evm.TU.Sc2ySwM_228.4615 Anthoceros agrestis HOM05D001920 ORTHO05D005408 1.1e-131 474.6 331 70.1
FAN22G0219 Fragaria x ananassa HOM05D001920 ORTHO05D005408 5.0e-129 465.7 492 51.4
PRCOL_00001520 Prasinoderma coloniale HOM05D001920 ORTHO05D005408 2.9e-121 439.9 535 45.2
Oeu004630.1 Olea europaea HOM05D001920 ORTHO05D005408 5.9e-114 415.6 573 47.3
Cre10.g439650 Chlamydomonas reinhardtii HOM05D001920 ORTHO05D005408 9.1e-99 365.2 528 39.0
FAN17G1736 Fragaria x ananassa HOM05D001920 ORTHO05D005408 2.6e-93 347.1 428 47.4
MCO04G241 Micromonas commoda HOM05D001920 ORTHO05D005408 4.7e-87 326.2 423 41.4
FAN12G2252 Fragaria x ananassa HOM05D001920 ORTHO05D005408 3.7e-84 316.6 346 53.8
Migut.A00111 Erythranthe guttata HOM05D001920 ORTHO05D005408 4.4e-69 266.5 169 82.2
Gorai.009G043000 Gossypium raimondii HOM05D001920 ORTHO05D005408 3.7e-68 263.5 537 38.4
CDE05G0360 Ceratophyllum demersum HOM05D001920 ORTHO05D005408 4.6e-66 256.5 186 67.7
CDE05G1717 Ceratophyllum demersum HOM05D001920 ORTHO05D005408 2.4e-59 234.2 308 45.1
MBI13_g05979_MAGBIO Magnolia biondii HOM05D001920 ORTHO05D005408 3.8e-52 210.3 408 36.8
arahy.Tifrunner.gnm1.ann1.NPWH83 Arachis hypogaea HOM05D001920 ORTHO05D005408 1.7e-49 201.4 105 95.2
SEGI_36171 Sequoiadendron giganteum HOM05D001920 ORTHO05D000001 5.8e-45 186.4 139 69.8
MSTRG.25967 Avicennia marina HOM05D001920 ORTHO05D005408 8.1e-39 166.0 105 82.9
Gohir.D05G042133 Gossypium hirsutum HOM05D001920 ORTHO05D005408 7.6e-37 159.5 198 50.0
Lj7A264G15 Lonicera japonica HOM05D001920 ORTHO05D005408 7.6e-37 159.5 112 77.7
Eucgr.L03492 Eucalyptus grandis HOM05D001920 ORTHO05D005408 9.6e-32 142.5 121 62.0
BcaNung02635 Brassica carinata HOM05D001920 ORTHO05D005408 3.8e-28 130.6 80 80.0
Hma1.2p1_0196F.1_g084820 Hydrangea macrophylla HOM05D001920 ORTHO05D005408 4.2e-27 127.1 104 70.2
TPR.G36194 Trifolium pratense HOM05D001920 ORTHO05D005408 1.6e-26 125.2 91 75.8
TPR.G748 Trifolium pratense HOM05D001920 ORTHO05D005408 9.6e-24 115.9 65 90.8
TPR.G14973 Trifolium pratense HOM05D001920 ORTHO05D005408 6.9e-22 109.8 80 65.0
Zm00001eb014540 Zea mays HOM05D000282 ORTHO05D000272 8.4e-20 102.8 94 61.7
BcaC05g26027 Brassica carinata HOM05D001920 ORTHO05D024365 2.1e-18 98.2 69 75.4
SGA_v2.0_scaffold26G11215 Striga asiatica HOM05D001920 ORTHO05D024365 7.4e-16 89.7 52 80.8
TPR.G36118 Trifolium pratense HOM05D001920 ORTHO05D005408 1.8e-14 85.1 54 81.5
MBI17_g36954_MAGBIO Magnolia biondii HOM05D001920 ORTHO05D012920 2.6e-13 81.3 72 62.5
C05p19930 Brassica napus HOM05D001920 ORTHO05D024365 1.3e-12 79.0 53 71.7
C06p01410 Brassica napus HOM05D001920 ORTHO05D024365 2.2e-12 78.2 79 55.7
ECA232G0588 Erigeron canadensis HOM05D000006 ORTHO05D000001 2.7e-10 71.2 49 73.5
BolC5t30691H Brassica oleracea HOM05D001920 ORTHO05D024365 1.0e-09 69.3 43 76.7
Lsat_1_v5_gn_6_51140 Lactuca sativa HOM05D001920 ORTHO05D233273 2.4e-06 58.2 52 55.8


User provided reference genes

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