Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.13C5F2 Arachis hypogaea HOM05D003890 ORTHO05D004514 1.5e-104 382.9 194 100.0
arahy.Tifrunner.gnm1.ann1.V44IJD Arachis hypogaea HOM05D003890 ORTHO05D004514 3.2e-83 312.0 194 84.0
Glyma.08G335500 Glycine max HOM05D003890 ORTHO05D004514 2.9e-60 235.7 228 61.8
Ca_14881_v3 Cicer arietinum L. HOM05D003890 ORTHO05D004514 8.5e-60 234.2 223 60.1
VMungo0540G2384 Vigna mungo HOM05D003890 ORTHO05D004514 8.5e-60 234.2 224 62.1
Glyma.18G070500 Glycine max HOM05D003890 ORTHO05D004514 2.5e-59 232.6 223 61.9
Phvul.006G062600 Phaseolus vulgaris HOM05D003890 ORTHO05D004514 5.5e-59 231.5 224 61.2
TPR.G30124 Trifolium pratense HOM05D003890 ORTHO05D004514 4.9e-55 218.4 220 56.8
Lj6g0021955 Lotus japonicus HOM05D003890 ORTHO05D004514 1.1e-54 217.2 225 58.2
Psat5g163000 Pisum sativum HOM05D003890 ORTHO05D004514 9.2e-54 214.2 223 55.6
Lalb_Chr04g0247401 Lupinus albus HOM05D003890 ORTHO05D004514 1.2e-53 213.8 211 60.2
Lalb_Chr04g0247641 Lupinus albus HOM05D003890 ORTHO05D004514 1.2e-53 213.8 211 60.2
RcHm_v2.0_Chr5g0052051 Rosa chinensis HOM05D003890 ORTHO05D004514 3.5e-53 212.2 219 56.6
Sed0019717 Sechium edule HOM05D003890 ORTHO05D004514 5.9e-53 211.5 227 53.3
Thecc.09G233900 Theobroma cacao HOM05D003890 ORTHO05D004514 1.7e-52 209.9 228 54.8
arahy.Tifrunner.gnm1.ann1.HEYT23 Arachis hypogaea HOM05D003890 ORTHO05D004514 2.3e-52 209.5 203 58.6
FAN16G3317 Fragaria x ananassa HOM05D003890 ORTHO05D004514 3.8e-52 208.8 222 55.4
FAN21G3604 Fragaria x ananassa HOM05D003890 ORTHO05D004514 3.8e-52 208.8 222 55.4
CiPaw.14G119100 Carya illinoinensis HOM05D003890 ORTHO05D004514 5.0e-52 208.4 230 57.0
FvH4_3g28850 Fragaria vesca HOM05D003890 ORTHO05D004514 6.6e-52 208.0 222 55.4
FAN25G3809 Fragaria x ananassa HOM05D003890 ORTHO05D004514 6.6e-52 208.0 222 55.4
COL.COLO4_07583 Corchorus olitorius HOM05D003890 ORTHO05D004514 8.6e-52 207.6 230 53.0
FAN11G0759 Fragaria x ananassa HOM05D003890 ORTHO05D004514 8.6e-52 207.6 222 55.4
QL01p004686 Quercus lobata HOM05D003890 ORTHO05D004514 8.6e-52 207.6 227 55.9
ClCG03G013240 Citrullus lanatus HOM05D003890 ORTHO05D004514 1.1e-51 207.2 224 55.4
Haze_23135 Corylus avellana HOM05D000807 ORTHO05D000662 1.1e-51 207.2 228 57.5
CiPaw.13G160900 Carya illinoinensis HOM05D003890 ORTHO05D004514 1.9e-51 206.5 228 56.1
Medtr3g061630 Medicago truncatula HOM05D003890 ORTHO05D004514 3.3e-51 205.7 225 54.7
arahy.Tifrunner.gnm1.ann1.5L0PCQ Arachis hypogaea HOM05D003890 ORTHO05D004514 1.6e-50 203.4 218 56.9
Lalb_Chr18g0050551 Lupinus albus HOM05D003890 ORTHO05D004514 1.6e-50 203.4 214 57.0
Atru.chr3.2715 Acer truncatum HOM05D003890 ORTHO05D004514 2.8e-50 202.6 219 54.3
Cfa009770 Carpinus fangiana HOM05D003890 ORTHO05D004514 3.6e-50 202.2 228 56.6
CsaV3_1G042820 Cucumis sativus L. HOM05D003890 ORTHO05D004514 3.6e-50 202.2 226 54.4
Duzib150G1364 Durio zibethinus HOM05D003890 ORTHO05D004514 3.6e-50 202.2 230 53.5
Potri.001G258100 Populus trichocarpa HOM05D003890 ORTHO05D004514 2.3e-49 199.5 230 54.8
Ciclev10016574m.g Citrus clementina HOM05D003890 ORTHO05D004514 5.2e-49 198.4 234 52.6
Dinv36258 Davidia involucrata HOM05D003890 ORTHO05D004514 6.8e-49 198.0 223 55.2
TAR633G1481 Trochodendron aralioides HOM05D003890 ORTHO05D004514 6.8e-49 198.0 228 53.9
Actinidia16334 Actinidia chinensis HOM05D003890 ORTHO05D004514 8.9e-49 197.6 218 54.1
Cpa.g.sc84.53 Carica papaya HOM05D003890 ORTHO05D004514 8.9e-49 197.6 223 52.0
Sabra16G0157800 Salix brachista HOM05D003890 ORTHO05D004514 8.9e-49 197.6 228 53.9
Gohir.D05G072300 Gossypium hirsutum HOM05D003890 ORTHO05D004514 1.5e-48 196.8 231 53.2
Gorai.009G073300 Gossypium raimondii HOM05D003890 ORTHO05D004514 1.5e-48 196.8 231 53.2
Prupe.4G249500 Prunus persica HOM05D003890 ORTHO05D004514 2.6e-48 196.1 230 55.7
Duzib170G0856 Durio zibethinus HOM05D003890 ORTHO05D004514 3.4e-48 195.7 227 51.1
CANSAT56G1539 Cannabis sativa HOM05D003890 ORTHO05D004514 5.7e-48 194.9 231 51.9
Gohir.A05G069400 Gossypium hirsutum HOM05D003890 ORTHO05D004514 5.7e-48 194.9 231 52.4
TAR636G2753 Trochodendron aralioides HOM05D003890 ORTHO05D004514 5.7e-48 194.9 230 53.0
Manes.14G002800 Manihot esculenta HOM05D003890 ORTHO05D004514 9.8e-48 194.1 231 53.2
Actinidia06907 Actinidia chinensis HOM05D003890 ORTHO05D004514 1.3e-47 193.7 218 53.2
Potri.009G053300 Populus trichocarpa HOM05D003890 ORTHO05D004514 2.2e-47 193.0 224 54.5
Aqoxy2G00137 Aquilegia oxysepala HOM05D003890 ORTHO05D004514 3.7e-47 192.2 221 53.4
Manes.06G164200 Manihot esculenta HOM05D003890 ORTHO05D004514 6.4e-47 191.4 229 52.8
Nn2g15369 Nelumbo nucifera HOM05D003890 ORTHO05D004514 6.4e-47 191.4 225 51.1
Hma1.2p1_0027F.1_g017050 Hydrangea macrophylla HOM05D003890 ORTHO05D004514 1.1e-46 190.7 225 54.2
MD03G1175000 Malus domestica HOM05D003890 ORTHO05D004514 1.4e-46 190.3 225 53.3
Hund07506 Selenicereus undatus HOM05D003890 ORTHO05D004514 1.4e-46 190.3 226 50.9
MD11G1193100 Malus domestica HOM05D003890 ORTHO05D004514 1.2e-45 187.2 227 54.6
Rhsim01G0191800 Rhododendron simsii HOM05D003890 ORTHO05D004514 2.0e-45 186.4 218 51.8
Sabra09G0038800 Salix brachista HOM05D003890 ORTHO05D004514 2.0e-45 186.4 222 52.3
Glyma.14G009900 Glycine max HOM05D003890 ORTHO05D004514 3.5e-45 185.7 213 53.1
DCAR_002072 Daucus carota HOM05D003890 ORTHO05D004514 1.7e-44 183.3 216 52.8
TWI60G0796 Tripterygium wilfordii HOM05D003890 ORTHO05D004514 2.3e-44 183.0 215 52.6
Phvul.008G283400 Phaseolus vulgaris HOM05D003890 ORTHO05D004514 6.6e-44 181.4 212 51.9
THA.LOC104807531 Tarenaya hassleriana HOM05D003890 ORTHO05D004514 8.6e-44 181.0 222 50.5
ECA240G2592 Erigeron canadensis HOM05D003890 ORTHO05D004514 1.1e-43 180.6 220 50.9
PGR102G1724 Punica granatum HOM05D003890 ORTHO05D004514 2.5e-43 179.5 236 47.0
Hund22030 Selenicereus undatus HOM05D003890 ORTHO05D004514 2.5e-43 179.5 213 52.6
Sopen11g025500 Solanum pennellii HOM05D003890 ORTHO05D004514 3.3e-43 179.1 210 49.5
Solyc11g065740.2 Solanum lycopersicum HOM05D003890 ORTHO05D004514 4.3e-43 178.7 210 49.5
ATR0332G008 Amborella trichopoda HOM05D003890 ORTHO05D004514 5.6e-43 178.3 222 50.0
Nitab4.5_0001587g0060 Nicotiana tabacum HOM05D003890 ORTHO05D004514 9.5e-43 177.6 224 48.2
AUR62000123 Chenopodium quinoa HOM05D003890 ORTHO05D004514 1.2e-42 177.2 206 50.5
Cc10_g03220 Coffea canephora HOM05D003890 ORTHO05D004514 1.2e-42 177.2 220 50.0
Lj1A330T24 Lonicera japonica HOM05D003890 ORTHO05D004514 1.6e-42 176.8 217 50.7
Nitab4.5_0002741g0130 Nicotiana tabacum HOM05D003890 ORTHO05D004514 1.6e-42 176.8 224 47.8
Oeu001480.1 Olea europaea HOM05D003890 ORTHO05D004514 1.6e-42 176.8 218 50.5
PSO384G2797 Papaver somniferum HOM05D003890 ORTHO05D004514 2.1e-42 176.4 225 51.1
TWI32G0323 Tripterygium wilfordii HOM05D003890 ORTHO05D004514 2.1e-42 176.4 216 50.9
GSVIVG01032095001 Vitis vinifera HOM05D003890 ORTHO05D004514 3.6e-42 175.6 146 61.0
AUR62019304 Chenopodium quinoa HOM05D003890 ORTHO05D004514 4.7e-42 175.3 224 48.7
CAN.G599.2 Capsicum annuum HOM05D003890 ORTHO05D004514 6.2e-42 174.9 208 50.0
THA.LOC104811066 Tarenaya hassleriana HOM05D003890 ORTHO05D004514 6.2e-42 174.9 221 50.2
PGSC0003DMG400007341 Solanum tuberosum HOM05D003890 ORTHO05D004514 8.0e-42 174.5 210 49.0
VMungo0647G1030 Vigna mungo HOM05D003890 ORTHO05D004514 1.8e-41 173.3 212 50.5
Lsat_1_v5_gn_1_66000 Lactuca sativa HOM05D003890 ORTHO05D004514 2.3e-41 172.9 217 50.2
BNapus_Darmor_BZH_scaffold_38p02060 Brassica napus HOM05D003890 ORTHO05D004514 4.0e-41 172.2 212 49.1
Gohir.D09G111000 Gossypium hirsutum HOM05D003890 ORTHO05D004514 4.0e-41 172.2 217 50.2
MBI04_g36752_MAGBIO Magnolia biondii HOM05D003890 ORTHO05D004514 4.0e-41 172.2 236 47.5
Gorai.006G128600 Gossypium raimondii HOM05D003890 ORTHO05D004514 5.2e-41 171.8 214 50.0
SGA_v2.0_scaffold8G04590 Striga asiatica HOM05D003890 ORTHO05D004514 5.2e-41 171.8 219 48.9
EL10Ac4g10247 Beta vulgaris HOM05D003890 ORTHO05D004514 8.9e-41 171.0 224 47.3
GSVIVG01025257001 Vitis vinifera HOM05D003890 ORTHO05D004514 8.9e-41 171.0 170 57.1
Gohir.A09G114300 Gossypium hirsutum HOM05D003890 ORTHO05D004514 1.2e-40 170.6 217 49.8
PGR119G1229 Punica granatum HOM05D003890 ORTHO05D004514 1.2e-40 170.6 228 46.9
vmacro12718 Vaccinium macrocarpon HOM05D003890 ORTHO05D004514 1.2e-40 170.6 244 43.9
BcaC03g13717 Brassica carinata HOM05D003890 ORTHO05D004514 1.5e-40 170.2 212 48.6
BcaB08g36566 Brassica carinata HOM05D003890 ORTHO05D004514 2.0e-40 169.9 216 50.0
Eucgr.J00766 Eucalyptus grandis HOM05D003890 ORTHO05D004514 2.6e-40 169.5 218 48.2
Migut.N02317 Erythranthe guttata HOM05D003890 ORTHO05D004514 1.7e-39 166.8 210 48.1
ClCG02G023230 Citrullus lanatus HOM05D003890 ORTHO05D004514 2.9e-39 166.0 218 48.6
Peaxi162Scf00004g02340 Petunia axillaris HOM05D003890 ORTHO05D004514 2.9e-39 166.0 206 51.9
MBI04_g40116_MAGBIO Magnolia biondii HOM05D003890 ORTHO05D004514 3.7e-39 165.6 247 44.9
BcaB01g04844 Brassica carinata HOM05D003890 ORTHO05D004514 1.1e-38 164.1 212 47.6
MELO3C014593.2 Cucumis melo HOM05D003890 ORTHO05D004514 1.1e-38 164.1 216 46.8
CsaV3_4G024270 Cucumis sativus L. HOM05D003890 ORTHO05D004514 1.1e-38 164.1 214 47.7
Dinv09354 Davidia involucrata HOM05D003890 ORTHO05D004514 1.1e-38 164.1 224 45.5
Lsat_1_v5_gn_6_47921 Lactuca sativa HOM05D003890 ORTHO05D004514 1.9e-38 163.3 211 48.8
Oeu016684.1 Olea europaea HOM05D003890 ORTHO05D004514 2.4e-38 162.9 217 47.9
Aa31LG4G8640 Aethionema arabicum HOM05D003890 ORTHO05D004514 5.4e-38 161.8 213 44.6
A02p05850 Brassica napus HOM05D003890 ORTHO05D004514 5.4e-38 161.8 234 43.6
BolC2t06986H Brassica oleracea HOM05D003890 ORTHO05D004514 5.4e-38 161.8 223 46.2
HanXRQChr02g0056201 Helianthus annuus HOM05D003890 ORTHO05D004514 5.4e-38 161.8 220 46.8
AT5G19855 Arabidopsis thaliana HOM05D003890 ORTHO05D004514 7.0e-38 161.4 210 47.1
Ah.04g161930 Amaranthus hybridus HOM05D003890 ORTHO05D004514 1.2e-37 160.6 224 44.2
C03p11250 Brassica napus HOM05D003890 ORTHO05D004514 1.2e-37 160.6 216 46.8
ECA233G4357 Erigeron canadensis HOM05D003890 ORTHO05D004514 1.2e-37 160.6 207 45.4
BcaB01g04825 Brassica carinata HOM05D003890 ORTHO05D004514 2.0e-37 159.8 216 46.8
BolC3t13596H Brassica oleracea HOM05D003890 ORTHO05D004514 2.0e-37 159.8 216 46.8
Sed0005000 Sechium edule HOM05D003890 ORTHO05D004514 3.5e-37 159.1 205 47.3
A03p09680 Brassica napus HOM05D003890 ORTHO05D004514 4.6e-37 158.7 216 46.3
CDE02G1666 Ceratophyllum demersum HOM05D003890 ORTHO05D004514 7.8e-37 157.9 227 44.9
Lsat_1_v5_gn_4_31621 Lactuca sativa HOM05D003890 ORTHO05D004514 1.3e-36 157.1 116 64.7
MSTRG.21378 Avicennia marina HOM05D003890 ORTHO05D004514 3.0e-36 156.0 218 45.4
Carub.0006s1821 Capsella rubella HOM05D003890 ORTHO05D004514 3.9e-36 155.6 216 45.4
AL6G31380 Arabidopsis lyrata HOM05D003890 ORTHO05D004514 6.6e-36 154.8 215 46.5
Cc02_g28010 Coffea canephora HOM05D003890 ORTHO05D004514 8.6e-36 154.5 168 50.0
BraA02t05537Z Brassica rapa HOM05D003890 ORTHO05D004514 1.1e-35 154.1 223 43.9
DCAR_003214 Daucus carota HOM05D003890 ORTHO05D004514 1.1e-35 154.1 139 55.4
HanXRQChr16g0524491 Helianthus annuus HOM05D003890 ORTHO05D004514 1.5e-35 153.7 205 43.4
Thhalv10015929m.g Eutrema salsugineum HOM05D003890 ORTHO05D004514 1.9e-35 153.3 201 47.8
MBI02_g05665_MAGBIO Magnolia biondii HOM05D003890 ORTHO05D004514 2.5e-35 152.9 226 45.6
Zm00001eb212460 Zea mays HOM05D003890 ORTHO05D004514 2.5e-35 152.9 151 55.6
Ah.06g194180 Amaranthus hybridus HOM05D003890 ORTHO05D004514 9.5e-35 151.0 264 39.0
Os03g0807900 Oryza sativa ssp. japonica HOM05D003890 ORTHO05D004514 1.6e-34 150.2 199 46.2
BraA03t10284Z Brassica rapa HOM05D003890 ORTHO05D004514 3.6e-34 149.1 230 43.5
MSTRG.18426 Avicennia marina HOM05D003890 ORTHO05D004514 1.1e-33 147.5 210 44.3
CARHR193020 Cardamine hirsuta HOM05D003890 ORTHO05D004514 2.3e-33 146.4 161 49.1
Os07g0569600 Oryza sativa ssp. japonica HOM05D003890 ORTHO05D004514 3.1e-33 146.0 154 51.3
BcaC04g19383 Brassica carinata HOM05D003890 ORTHO05D004514 1.2e-32 144.1 197 46.2
MSTRG.17029 Avicennia marina HOM05D003890 ORTHO05D004514 3.4e-32 142.5 128 57.8
CSS0039551 Camellia sinensis var. sinensis HOM05D003890 ORTHO05D004514 3.4e-32 142.5 82 79.3
Migut.D00602 Erythranthe guttata HOM05D003890 ORTHO05D004514 4.4e-32 142.1 222 42.3
MSTRG.28066 Avicennia marina HOM05D003890 ORTHO05D004514 1.7e-31 140.2 215 39.1
unitig_8.g2995 Utricularia gibba HOM05D003890 ORTHO05D004514 4.9e-31 138.7 227 40.5
Sp6g24540 Schrenkiella parvula HOM05D003890 ORTHO05D004514 6.4e-31 138.3 200 44.0
SalBow6G5214 Salvia bowleyana HOM05D003890 ORTHO05D004514 8.3e-31 137.9 205 42.9
SalBow6G3376 Salvia bowleyana HOM05D003890 ORTHO05D004514 5.4e-30 135.2 207 42.5
HPP92_024873 Vanilla planifolia HOM05D003890 ORTHO05D004514 5.4e-30 135.2 180 48.3
C09p56300 Brassica napus HOM05D003890 ORTHO05D004514 1.2e-29 134.0 215 42.8
BolC9t58499H Brassica oleracea HOM05D003890 ORTHO05D004514 1.2e-29 134.0 215 42.8
HanXRQChr01g0018191 Helianthus annuus HOM05D003890 ORTHO05D004514 1.6e-29 133.7 215 40.5
SGA_v2.0_scaffold3G01504 Striga asiatica HOM05D003890 ORTHO05D004514 2.1e-29 133.3 203 40.9
unitig_22.g6202 Utricularia gibba HOM05D003890 ORTHO05D004514 3.5e-29 132.5 141 50.4
Nn7g36206 Nelumbo nucifera HOM05D003890 ORTHO05D004514 7.8e-29 131.3 231 42.4
Zm00001eb324740 Zea mays HOM05D003890 ORTHO05D004514 7.8e-29 131.3 129 51.2
MELO3C015193.2 Cucumis melo HOM05D003890 ORTHO05D004514 1.5e-27 127.1 184 47.8
Pp3c9_10480 Physcomitrium patens HOM05D003890 ORTHO05D004514 5.6e-27 125.2 128 51.6
Pp3c12_1270 Physcomitrium patens HOM05D003890 ORTHO05D004514 3.1e-25 119.4 128 50.8
Eucgr.B03687 Eucalyptus grandis HOM05D003890 ORTHO05D004514 4.4e-24 115.5 191 40.8
Mapoly0069s0007 Marchantia polymorpha HOM05D003890 ORTHO05D004514 5.8e-24 115.2 214 39.3
arahy.Tifrunner.gnm1.ann1.11Y6U0 Arachis hypogaea HOM05D003890 ORTHO05D004514 7.6e-24 114.8 76 78.9
Sopen01g034250 Solanum pennellii HOM05D003890 ORTHO05D004514 2.2e-23 113.2 214 37.4
AagrBONN_evm.TU.Sc2ySwM_228.2147 Anthoceros agrestis HOM05D003890 ORTHO05D004514 4.9e-23 112.1 136 46.3
SEGI_02367 Sequoiadendron giganteum HOM05D003890 ORTHO05D004514 6.4e-23 111.7 101 54.5
Solyc01g087190.4 Solanum lycopersicum HOM05D003890 ORTHO05D004514 6.4e-23 111.7 214 36.4
Peaxi162Scf00953g00113 Petunia axillaris HOM05D003890 ORTHO05D004514 8.4e-23 111.3 211 37.0
SMO275G0040 Selaginella moellendorffii HOM05D003890 ORTHO05D004514 1.1e-22 110.9 122 50.8
A10p19900 Brassica napus HOM05D003890 ORTHO05D004514 5.4e-22 108.6 63 76.2
Mapoly0002s0228 Marchantia polymorpha HOM05D003890 ORTHO05D004514 2.1e-21 106.7 132 43.9
PGSC0003DMG400006801 Solanum tuberosum HOM05D003890 ORTHO05D004514 6.0e-21 105.1 220 35.5
Nitab4.5_0001186g0010 Nicotiana tabacum HOM05D003890 ORTHO05D004514 1.3e-20 104.0 217 35.0
CAN.G1560.2 Capsicum annuum HOM05D003890 ORTHO05D004514 1.7e-20 103.6 216 35.2
CBR_g21098 Chara braunii HOM05D003890 ORTHO05D004514 1.5e-19 100.5 129 42.6
Nitab4.5_0004290g0020 Nicotiana tabacum HOM05D003890 ORTHO05D004514 1.5e-19 100.5 214 33.6
BraA10t44065Z Brassica rapa HOM05D003890 ORTHO05D004514 8.1e-18 94.7 54 74.1
BcaC04g19382 Brassica carinata HOM05D000916 ORTHO05D008653 2.6e-16 89.7 54 74.1
Sc09g0000720 Simmondsia chinensis HOM05D003890 ORTHO05D004514 1.9e-11 73.6 156 38.5
CSS0045152 Camellia sinensis var. sinensis HOM05D003890 ORTHO05D004514 6.9e-09 65.1 112 42.9


User provided reference genes

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