Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.12X2WP Arachis hypogaea HOM05D005831 ORTHO05D007007 2.2e-177 625.5 318 100.0
arahy.Tifrunner.gnm1.ann1.VR587A Arachis hypogaea HOM05D005831 ORTHO05D007007 1.9e-77 293.5 366 52.5
arahy.Tifrunner.gnm1.ann1.2ULK6I Arachis hypogaea HOM05D005831 ORTHO05D007007 9.7e-77 291.2 305 58.4
VMungo0647G0599 Vigna mungo HOM05D005831 ORTHO05D007007 1.9e-72 276.9 329 52.6
Phvul.001G039000 Phaseolus vulgaris HOM05D005831 ORTHO05D007007 2.5e-72 276.6 329 52.9
Glyma.14G099100 Glycine max HOM05D005831 ORTHO05D007007 9.4e-72 274.6 326 52.5
Medtr1g015390 Medicago truncatula HOM05D005831 ORTHO05D007007 2.3e-70 270.0 339 51.0
Lj5g0001901 Lotus japonicus HOM05D005831 ORTHO05D007007 1.3e-68 264.2 331 52.3
Glyma.17G225600 Glycine max HOM05D005831 ORTHO05D007007 1.1e-67 261.2 326 50.9
Lalb_Chr09g0334801 Lupinus albus HOM05D005831 ORTHO05D007007 1.0e-62 244.6 328 48.5
PGR004G2090 Punica granatum HOM05D005831 ORTHO05D007007 5.7e-61 238.8 331 46.8
QL04p096581 Quercus lobata HOM05D005831 ORTHO05D007007 1.7e-60 237.3 334 45.5
CANSAT25G0005 Cannabis sativa HOM05D005831 ORTHO05D007007 2.8e-60 236.5 333 47.1
Hma1.2p1_0231F.1_g097400 Hydrangea macrophylla HOM05D005831 ORTHO05D007007 1.4e-59 234.2 325 47.1
Thecc.09G062000 Theobroma cacao HOM05D005831 ORTHO05D007007 2.4e-59 233.4 332 44.6
Duzib150G1275 Durio zibethinus HOM05D005831 ORTHO05D007007 3.1e-59 233.0 334 44.3
Prupe.1G405700 Prunus persica HOM05D005831 ORTHO05D007007 3.1e-59 233.0 326 45.1
COL.COLO4_21126 Corchorus olitorius HOM05D005831 ORTHO05D007007 7.0e-59 231.9 332 44.3
MD08G1070400 Malus domestica HOM05D005831 ORTHO05D007007 7.0e-59 231.9 324 45.7
MD15G1051800 Malus domestica HOM05D005831 ORTHO05D007007 7.0e-59 231.9 330 44.8
GSVIVG01035453001 Vitis vinifera HOM05D005831 ORTHO05D007007 4.5e-58 229.2 328 45.1
CSS0021293 Camellia sinensis var. sinensis HOM05D005831 ORTHO05D007007 5.9e-58 228.8 331 43.8
Manes.03G052700 Manihot esculenta HOM05D005831 ORTHO05D007007 7.7e-58 228.4 330 45.5
RcHm_v2.0_Chr6g0311631 Rosa chinensis HOM05D005831 ORTHO05D007007 7.7e-58 228.4 322 44.4
Cpa.g.sc126.34 Carica papaya HOM05D005831 ORTHO05D007007 1.3e-57 227.6 323 44.0
CiPaw.15G092600 Carya illinoinensis HOM05D005831 ORTHO05D007007 2.2e-57 226.9 327 43.7
CsaV3_4G036010 Cucumis sativus L. HOM05D005831 ORTHO05D007007 5.0e-57 225.7 328 45.4
Gorai.001G020700 Gossypium raimondii HOM05D005831 ORTHO05D007007 6.5e-57 225.3 331 43.5
Cfa018014 Carpinus fangiana HOM05D005831 ORTHO05D007007 8.5e-57 224.9 334 43.7
FvH4_2g31140 Fragaria vesca HOM05D005831 ORTHO05D007007 2.5e-56 223.4 325 43.1
FAN24G1737 Fragaria x ananassa HOM05D005831 ORTHO05D007007 2.5e-56 223.4 325 43.1
Potri.006G222000 Populus trichocarpa HOM05D005831 ORTHO05D007007 2.5e-56 223.4 336 44.3
Gohir.D07G020000 Gossypium hirsutum HOM05D005831 ORTHO05D007007 3.2e-56 223.0 336 43.2
Sed0012871 Sechium edule HOM05D005831 ORTHO05D007007 3.2e-56 223.0 329 44.1
Ciclev10025877m.g Citrus clementina HOM05D005831 ORTHO05D007007 5.5e-56 222.2 323 44.0
FAN15G1366 Fragaria x ananassa HOM05D005831 ORTHO05D007007 7.2e-56 221.9 323 44.0
TWI15G0825 Tripterygium wilfordii HOM05D005831 ORTHO05D007007 2.1e-55 220.3 322 44.1
Nitab4.5_0000446g0240 Nicotiana tabacum HOM05D005831 ORTHO05D007007 2.7e-55 219.9 333 43.2
Nn8g38706 Nelumbo nucifera HOM05D005831 ORTHO05D007007 4.7e-55 219.2 325 44.9
ClCG05G015690 Citrullus lanatus HOM05D005831 ORTHO05D007007 6.1e-55 218.8 329 44.1
Eucgr.C03149 Eucalyptus grandis HOM05D005831 ORTHO05D007007 6.1e-55 218.8 323 43.0
vmacro07801 Vaccinium macrocarpon HOM05D005831 ORTHO05D007007 1.4e-54 217.6 329 42.9
Sopen04g034540 Solanum pennellii HOM05D005831 ORTHO05D007007 1.8e-54 217.2 331 42.6
Solyc04g080930.4 Solanum lycopersicum HOM05D005831 ORTHO05D007007 3.0e-54 216.5 331 42.9
PGSC0003DMG400003758 Solanum tuberosum HOM05D005831 ORTHO05D007007 3.9e-54 216.1 331 42.0
HanXRQChr12g0359011 Helianthus annuus HOM05D005831 ORTHO05D007007 5.2e-54 215.7 327 43.4
Rhsim03G0040100 Rhododendron simsii HOM05D005831 ORTHO05D007007 5.2e-54 215.7 321 44.2
Migut.A00086 Erythranthe guttata HOM05D005831 ORTHO05D007007 6.7e-54 215.3 314 43.3
MSTRG.25981 Avicennia marina HOM05D005831 ORTHO05D007007 2.0e-53 213.8 334 43.1
TPR.G10653 Trifolium pratense HOM05D005831 ORTHO05D007007 2.0e-53 213.8 211 58.3
Nitab4.5_0009773g0010 Nicotiana tabacum HOM05D005831 ORTHO05D007007 3.3e-53 213.0 326 42.3
CAN.G6.15 Capsicum annuum HOM05D005831 ORTHO05D007007 4.4e-53 212.6 324 42.6
ECA234G1597 Erigeron canadensis HOM05D005831 ORTHO05D007007 4.4e-53 212.6 334 43.1
MBI19_g11845_MAGBIO Magnolia biondii HOM05D005831 ORTHO05D007007 9.7e-53 211.5 328 42.7
Ca_13107_v3 Cicer arietinum L. HOM05D005831 ORTHO05D007007 1.3e-52 211.1 307 48.5
Lsat_1_v5_gn_5_79500 Lactuca sativa HOM05D005831 ORTHO05D007007 1.3e-52 211.1 328 43.9
Aqoxy3G01546 Aquilegia oxysepala HOM05D005831 ORTHO05D007007 1.7e-52 210.7 326 42.3
DCAR_003715 Daucus carota HOM05D005831 ORTHO05D007007 2.8e-52 209.9 333 43.2
BcaC07g40824 Brassica carinata HOM05D005831 ORTHO05D007007 3.7e-52 209.5 308 43.2
PSO210G0521 Papaver somniferum HOM05D005831 ORTHO05D007007 3.7e-52 209.5 327 42.2
PSO210G7793 Papaver somniferum HOM05D005831 ORTHO05D007007 3.7e-52 209.5 324 42.0
BcaB08g35248 Brassica carinata HOM05D005831 ORTHO05D007007 6.3e-52 208.8 312 42.3
Cc08_g01270 Coffea canephora HOM05D005831 ORTHO05D007007 6.3e-52 208.8 328 42.7
Sabra06G0171700 Salix brachista HOM05D005831 ORTHO05D007007 6.3e-52 208.8 343 42.3
TAR383G0824 Trochodendron aralioides HOM05D005831 ORTHO05D007007 8.2e-52 208.4 314 43.0
Actinidia25695 Actinidia chinensis HOM05D005831 ORTHO05D007007 1.8e-51 207.2 331 43.2
C08p38160 Brassica napus HOM05D005831 ORTHO05D007007 1.8e-51 207.2 309 43.0
BolC8t51391H Brassica oleracea HOM05D005831 ORTHO05D007007 1.8e-51 207.2 309 43.0
Carub.0004s0626 Capsella rubella HOM05D005831 ORTHO05D007007 5.3e-51 205.7 327 40.7
AL4G18970 Arabidopsis lyrata HOM05D005831 ORTHO05D007007 1.2e-50 204.5 323 41.8
AT2G26350 Arabidopsis thaliana HOM05D005831 ORTHO05D007007 2.6e-50 203.4 319 41.1
Sp4g07000 Schrenkiella parvula HOM05D005831 ORTHO05D007007 2.6e-50 203.4 319 39.8
A09p54720 Brassica napus HOM05D005831 ORTHO05D007007 4.5e-50 202.6 308 41.9
A09p55230 Brassica napus HOM05D005831 ORTHO05D007007 1.7e-49 200.7 309 41.7
BraA09t40881Z Brassica rapa HOM05D005831 ORTHO05D007007 1.7e-49 200.7 309 41.7
AUR62020581 Chenopodium quinoa HOM05D005831 ORTHO05D007007 5.0e-49 199.1 321 41.1
Thhalv10002014m.g Eutrema salsugineum HOM05D005831 ORTHO05D007007 6.5e-49 198.7 319 40.1
BraA09t40930Z Brassica rapa HOM05D005831 ORTHO05D007007 1.1e-48 198.0 295 43.1
Peaxi162Scf00101g01522 Petunia axillaris HOM05D005831 ORTHO05D007007 1.5e-48 197.6 324 40.1
SalBow4G2055 Salvia bowleyana HOM05D005831 ORTHO05D001900 1.9e-48 197.2 314 41.7
Haze_18115 Corylus avellana HOM05D005831 ORTHO05D007007 4.2e-48 196.1 341 41.6
Oeu027284.3 Olea europaea HOM05D005831 ORTHO05D007007 9.4e-48 194.9 354 39.8
EL10Ac2g03793 Beta vulgaris HOM05D005831 ORTHO05D007007 4.7e-47 192.6 327 39.4
Aa31LG5G18500 Aethionema arabicum HOM05D005831 ORTHO05D007007 8.0e-47 191.8 326 37.7
TWI38G0260 Tripterygium wilfordii HOM05D005831 ORTHO05D007007 1.5e-45 187.6 296 42.6
AUR62009089 Chenopodium quinoa HOM05D005831 ORTHO05D007007 5.7e-45 185.7 311 41.5
Sc09g0010090 Simmondsia chinensis HOM05D005831 ORTHO05D007007 3.7e-44 183.0 321 40.8
unitig_748.g8240 Utricularia gibba HOM05D005831 ORTHO05D007007 3.7e-44 183.0 326 39.3
ATR0598G074 Amborella trichopoda HOM05D005831 ORTHO05D007007 1.1e-43 181.4 331 38.4
CDE06G1722 Ceratophyllum demersum HOM05D005831 ORTHO05D007007 3.1e-43 179.9 290 39.7
Dinv41837 Davidia involucrata HOM05D005831 ORTHO05D007007 4.1e-43 179.5 295 42.4
Psat6g022600 Pisum sativum HOM05D005831 ORTHO05D007007 7.7e-42 175.3 275 44.0
Os07g0608800 Oryza sativa ssp. japonica HOM05D005831 ORTHO05D007007 1.9e-40 170.6 337 38.9
Lj2A627G34 Lonicera japonica HOM05D005831 ORTHO05D007007 4.4e-37 159.5 330 37.3
TPR.G38878 Trifolium pratense HOM05D005831 ORTHO05D007007 4.8e-36 156.0 215 50.2
THA.LOC104806019 Tarenaya hassleriana HOM05D005831 ORTHO05D007007 5.4e-35 152.5 337 35.0
Gohir.A07G020300 Gossypium hirsutum HOM05D005831 ORTHO05D007007 9.1e-35 151.8 275 36.7
FAN27G2028 Fragaria x ananassa HOM05D005831 ORTHO05D007007 1.9e-32 144.1 190 44.7
Atru.chr7.1858 Acer truncatum HOM05D005831 ORTHO05D007007 5.5e-32 142.5 184 50.0
Migut.A00085 Erythranthe guttata HOM05D005831 ORTHO05D007007 1.2e-31 141.4 287 36.2
Aqoxy2G00096 Aquilegia oxysepala HOM05D005831 ORTHO05D007007 8.0e-31 138.7 329 34.3
Mapoly0029s0064 Marchantia polymorpha HOM05D005831 ORTHO05D007007 8.9e-30 135.2 308 33.1
MELO3C016909.2 Cucumis melo HOM05D005831 ORTHO05D007007 1.2e-29 134.8 183 46.4
Sed0000493 Sechium edule HOM05D005831 ORTHO05D007007 1.5e-29 134.4 279 36.2
QL04p096516 Quercus lobata HOM05D000005 ORTHO05D000012 7.5e-29 132.1 217 39.6
FAN20G1335 Fragaria x ananassa HOM05D001583 ORTHO05D007007 1.7e-28 131.0 216 39.4
Hma1.2p1_0231F.1_g097410 Hydrangea macrophylla HOM05D005831 ORTHO05D007007 1.7e-28 131.0 218 41.7
SGA_v2.0_scaffold64G21865 Striga asiatica HOM05D005831 ORTHO05D007007 1.1e-27 128.3 180 43.3
Aqoxy3G01853 Aquilegia oxysepala HOM05D005831 ORTHO05D007007 4.1e-27 126.3 192 43.2
Pp3c13_19650 Physcomitrium patens HOM05D005831 ORTHO05D007007 5.9e-26 122.5 246 34.1
Actinidia27570 Actinidia chinensis HOM05D005831 ORTHO05D007007 1.9e-24 117.5 205 40.0
HPP92_027843 Vanilla planifolia HOM05D005831 ORTHO05D007007 2.3e-22 110.5 199 38.7
Zm00001eb108960 Zea mays HOM05D005831 ORTHO05D007007 2.3e-22 110.5 252 32.5
TPR.G40658 Trifolium pratense HOM05D005831 ORTHO05D007007 3.1e-22 110.2 142 52.1
CBR_g34477 Chara braunii HOM05D005831 ORTHO05D007007 3.6e-15 86.7 76 59.2
SHI18844 Sapria himalayana HOM05D005831 ORTHO05D007007 2.9e-12 77.0 186 34.4
SEGI_09068 Sequoiadendron giganteum HOM05D005831 ORTHO05D007007 4.1e-11 73.2 53 64.2
Cfa027250 Carpinus fangiana HOM05D005831 ORTHO05D007007 2.3e-09 67.4 217 27.6
PRCOL_00001676 Prasinoderma coloniale HOM05D005831 ORTHO05D007007 3.9e-09 66.6 252 25.4
arahy.Tifrunner.gnm1.ann1.7ZQ5SA Arachis hypogaea HOM05D038513 ORTHO05D083858 5.1e-09 66.2 37 81.1
arahy.Tifrunner.gnm1.ann1.CU0UJG Arachis hypogaea HOM05D038513 ORTHO05D002262 5.1e-09 66.2 37 81.1
arahy.Tifrunner.gnm1.ann1.FV9EQX Arachis hypogaea HOM05D005831 ORTHO05D007007 8.6e-09 65.5 39 82.1
Cre07.g337050 Chlamydomonas reinhardtii HOM05D005831 ORTHO05D007007 9.5e-08 62.0 88 43.2
Solyc08g061880.2 Solanum lycopersicum HOM05D005831 ORTHO05D007007 3.6e-07 60.1 45 68.9
AagrBONN_evm.TU.Sc2ySwM_117.3066 Anthoceros agrestis HOM05D005831 ORTHO05D007007 1.1e-06 58.5 83 39.8
MCO12G124 Micromonas commoda HOM05D005831 ORTHO05D007007 3.1e-06 57.0 76 40.8


User provided reference genes

Program Settings