Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.11Y6U0 Arachis hypogaea HOM05D003890 ORTHO05D004514 2.4e-45 185.3 103 100.0
Ca_14881_v3 Cicer arietinum L. HOM05D003890 ORTHO05D004514 2.1e-33 145.6 88 78.4
Glyma.08G335500 Glycine max HOM05D003890 ORTHO05D004514 1.4e-32 142.9 88 77.3
Glyma.18G070500 Glycine max HOM05D003890 ORTHO05D004514 1.4e-32 142.9 88 77.3
Glyma.14G009900 Glycine max HOM05D003890 ORTHO05D004514 4.0e-32 141.4 88 73.9
Phvul.008G283400 Phaseolus vulgaris HOM05D003890 ORTHO05D004514 8.9e-32 140.2 86 75.6
Lalb_Chr18g0050551 Lupinus albus HOM05D003890 ORTHO05D004514 1.2e-31 139.8 88 76.1
Psat5g163000 Pisum sativum HOM05D003890 ORTHO05D004514 1.2e-31 139.8 88 75.0
arahy.Tifrunner.gnm1.ann1.5L0PCQ Arachis hypogaea HOM05D003890 ORTHO05D004514 1.5e-31 139.4 88 75.0
Duzib170G0856 Durio zibethinus HOM05D003890 ORTHO05D004514 2.0e-31 139.0 88 76.1
Phvul.006G062600 Phaseolus vulgaris HOM05D003890 ORTHO05D004514 2.0e-31 139.0 88 75.0
Lj6g0021955 Lotus japonicus HOM05D003890 ORTHO05D004514 2.6e-31 138.7 88 75.0
Duzib150G1364 Durio zibethinus HOM05D003890 ORTHO05D004514 3.4e-31 138.3 88 75.0
Haze_23135 Corylus avellana HOM05D000807 ORTHO05D000662 5.8e-31 137.5 88 76.1
Nn2g15369 Nelumbo nucifera HOM05D003890 ORTHO05D004514 5.8e-31 137.5 88 72.7
Manes.06G164200 Manihot esculenta HOM05D003890 ORTHO05D004514 7.5e-31 137.1 88 73.9
Thecc.09G233900 Theobroma cacao HOM05D003890 ORTHO05D004514 7.5e-31 137.1 88 73.9
CiPaw.14G119100 Carya illinoinensis HOM05D003890 ORTHO05D004514 9.9e-31 136.7 88 73.9
FvH4_3g28850 Fragaria vesca HOM05D003890 ORTHO05D004514 9.9e-31 136.7 88 75.0
FAN16G3317 Fragaria x ananassa HOM05D003890 ORTHO05D004514 9.9e-31 136.7 88 75.0
FAN21G3604 Fragaria x ananassa HOM05D003890 ORTHO05D004514 9.9e-31 136.7 88 75.0
FAN25G3809 Fragaria x ananassa HOM05D003890 ORTHO05D004514 9.9e-31 136.7 88 75.0
RcHm_v2.0_Chr5g0052051 Rosa chinensis HOM05D003890 ORTHO05D004514 9.9e-31 136.7 88 75.0
VMungo0540G2384 Vigna mungo HOM05D003890 ORTHO05D004514 9.9e-31 136.7 88 73.9
FAN11G0759 Fragaria x ananassa HOM05D003890 ORTHO05D004514 1.3e-30 136.3 88 75.0
COL.COLO4_07583 Corchorus olitorius HOM05D003890 ORTHO05D004514 1.7e-30 136.0 88 72.7
TPR.G30124 Trifolium pratense HOM05D003890 ORTHO05D004514 1.7e-30 136.0 88 72.7
Gohir.A05G069400 Gossypium hirsutum HOM05D003890 ORTHO05D004514 2.2e-30 135.6 88 72.7
Gohir.D05G072300 Gossypium hirsutum HOM05D003890 ORTHO05D004514 2.2e-30 135.6 88 72.7
Gorai.009G073300 Gossypium raimondii HOM05D003890 ORTHO05D004514 2.2e-30 135.6 88 72.7
Actinidia16334 Actinidia chinensis HOM05D003890 ORTHO05D004514 2.9e-30 135.2 88 73.9
BcaB01g04844 Brassica carinata HOM05D003890 ORTHO05D004514 2.9e-30 135.2 88 70.5
vmacro12718 Vaccinium macrocarpon HOM05D003890 ORTHO05D004514 2.9e-30 135.2 81 75.3
Cfa009770 Carpinus fangiana HOM05D003890 ORTHO05D004514 4.9e-30 134.4 88 75.0
Gohir.A09G114300 Gossypium hirsutum HOM05D003890 ORTHO05D004514 4.9e-30 134.4 88 71.6
Sabra09G0038800 Salix brachista HOM05D003890 ORTHO05D004514 4.9e-30 134.4 88 73.9
Actinidia06907 Actinidia chinensis HOM05D003890 ORTHO05D004514 6.4e-30 134.0 88 72.7
BcaC03g13717 Brassica carinata HOM05D003890 ORTHO05D004514 6.4e-30 134.0 88 69.3
BNapus_Darmor_BZH_scaffold_38p02060 Brassica napus HOM05D003890 ORTHO05D004514 6.4e-30 134.0 88 69.3
Lalb_Chr04g0247401 Lupinus albus HOM05D003890 ORTHO05D004514 6.4e-30 134.0 88 72.7
Lalb_Chr04g0247641 Lupinus albus HOM05D003890 ORTHO05D004514 6.4e-30 134.0 88 72.7
QL01p004686 Quercus lobata HOM05D003890 ORTHO05D004514 6.4e-30 134.0 88 70.5
Sed0019717 Sechium edule HOM05D003890 ORTHO05D004514 6.4e-30 134.0 88 71.6
A02p05850 Brassica napus HOM05D003890 ORTHO05D004514 8.3e-30 133.7 85 71.8
CiPaw.13G160900 Carya illinoinensis HOM05D003890 ORTHO05D004514 1.1e-29 133.3 88 71.6
Gohir.D09G111000 Gossypium hirsutum HOM05D003890 ORTHO05D004514 1.1e-29 133.3 88 70.5
Gorai.006G128600 Gossypium raimondii HOM05D003890 ORTHO05D004514 1.1e-29 133.3 88 70.5
Potri.009G053300 Populus trichocarpa HOM05D003890 ORTHO05D004514 1.1e-29 133.3 88 72.7
ClCG03G013240 Citrullus lanatus HOM05D003890 ORTHO05D004514 1.4e-29 132.9 88 69.3
Dinv36258 Davidia involucrata HOM05D003890 ORTHO05D004514 1.4e-29 132.9 88 71.6
Potri.001G258100 Populus trichocarpa HOM05D003890 ORTHO05D004514 1.4e-29 132.9 88 72.7
CsaV3_1G042820 Cucumis sativus L. HOM05D003890 ORTHO05D004514 1.9e-29 132.5 88 69.3
Manes.14G002800 Manihot esculenta HOM05D003890 ORTHO05D004514 1.9e-29 132.5 88 70.5
Prupe.4G249500 Prunus persica HOM05D003890 ORTHO05D004514 1.9e-29 132.5 88 71.6
VMungo0647G1030 Vigna mungo HOM05D003890 ORTHO05D004514 1.9e-29 132.5 86 69.8
ATR0332G008 Amborella trichopoda HOM05D003890 ORTHO05D004514 2.4e-29 132.1 88 73.9
Thhalv10015929m.g Eutrema salsugineum HOM05D003890 ORTHO05D004514 2.4e-29 132.1 88 68.2
Medtr3g061630 Medicago truncatula HOM05D003890 ORTHO05D004514 2.4e-29 132.1 88 71.6
TAR633G1481 Trochodendron aralioides HOM05D003890 ORTHO05D004514 2.4e-29 132.1 88 72.7
MD03G1175000 Malus domestica HOM05D003890 ORTHO05D004514 3.2e-29 131.7 88 72.7
AL6G31380 Arabidopsis lyrata HOM05D003890 ORTHO05D004514 4.1e-29 131.3 88 68.2
BcaB01g04825 Brassica carinata HOM05D003890 ORTHO05D004514 4.1e-29 131.3 88 68.2
A03p09680 Brassica napus HOM05D003890 ORTHO05D004514 4.1e-29 131.3 88 68.2
C03p11250 Brassica napus HOM05D003890 ORTHO05D004514 4.1e-29 131.3 88 68.2
BolC3t13596H Brassica oleracea HOM05D003890 ORTHO05D004514 4.1e-29 131.3 88 68.2
Carub.0006s1821 Capsella rubella HOM05D003890 ORTHO05D004514 4.1e-29 131.3 88 67.0
Cpa.g.sc84.53 Carica papaya HOM05D003890 ORTHO05D004514 4.1e-29 131.3 85 71.8
MD11G1193100 Malus domestica HOM05D003890 ORTHO05D004514 4.1e-29 131.3 88 72.7
GSVIVG01025257001 Vitis vinifera HOM05D003890 ORTHO05D004514 4.1e-29 131.3 88 70.5
Zm00001eb212460 Zea mays HOM05D003890 ORTHO05D004514 4.1e-29 131.3 88 70.5
BcaB08g36566 Brassica carinata HOM05D003890 ORTHO05D004514 5.4e-29 131.0 88 68.2
CDE02G1666 Ceratophyllum demersum HOM05D003890 ORTHO05D004514 5.4e-29 131.0 85 71.8
Hma1.2p1_0027F.1_g017050 Hydrangea macrophylla HOM05D003890 ORTHO05D004514 5.4e-29 131.0 88 71.6
TWI60G0796 Tripterygium wilfordii HOM05D003890 ORTHO05D004514 5.4e-29 131.0 85 74.1
AT5G19855 Arabidopsis thaliana HOM05D003890 ORTHO05D004514 7.1e-29 130.6 88 67.0
Hund07506 Selenicereus undatus HOM05D003890 ORTHO05D004514 7.1e-29 130.6 88 70.5
Atru.chr3.2715 Acer truncatum HOM05D003890 ORTHO05D004514 9.2e-29 130.2 88 69.3
Dinv09354 Davidia involucrata HOM05D003890 ORTHO05D004514 9.2e-29 130.2 88 68.2
Sabra16G0157800 Salix brachista HOM05D003890 ORTHO05D004514 9.2e-29 130.2 85 74.1
Hund22030 Selenicereus undatus HOM05D003890 ORTHO05D004514 9.2e-29 130.2 89 71.9
TAR636G2753 Trochodendron aralioides HOM05D003890 ORTHO05D004514 9.2e-29 130.2 88 69.3
Rhsim01G0191800 Rhododendron simsii HOM05D003890 ORTHO05D004514 1.2e-28 129.8 88 68.2
CARHR193020 Cardamine hirsuta HOM05D003890 ORTHO05D004514 1.6e-28 129.4 88 65.9
MBI04_g36752_MAGBIO Magnolia biondii HOM05D003890 ORTHO05D004514 1.6e-28 129.4 85 71.8
GSVIVG01032095001 Vitis vinifera HOM05D003890 ORTHO05D004514 1.6e-28 129.4 88 68.2
THA.LOC104807531 Tarenaya hassleriana HOM05D003890 ORTHO05D004514 2.1e-28 129.0 88 67.0
Aa31LG4G8640 Aethionema arabicum HOM05D003890 ORTHO05D004514 3.5e-28 128.3 88 64.8
EL10Ac4g10247 Beta vulgaris HOM05D003890 ORTHO05D004514 3.5e-28 128.3 87 69.0
Eucgr.J00766 Eucalyptus grandis HOM05D003890 ORTHO05D004514 6.0e-28 127.5 88 69.3
PGR102G1724 Punica granatum HOM05D003890 ORTHO05D004514 1.0e-27 126.7 88 67.0
Ah.04g161930 Amaranthus hybridus HOM05D003890 ORTHO05D004514 1.7e-27 125.9 88 65.9
PSO384G2797 Papaver somniferum HOM05D003890 ORTHO05D004514 1.7e-27 125.9 87 70.1
Aqoxy2G00137 Aquilegia oxysepala HOM05D003890 ORTHO05D004514 2.3e-27 125.6 88 64.8
BolC2t06986H Brassica oleracea HOM05D003890 ORTHO05D004514 2.3e-27 125.6 99 61.6
CANSAT56G1539 Cannabis sativa HOM05D003890 ORTHO05D004514 3.0e-27 125.2 86 70.9
Ciclev10016574m.g Citrus clementina HOM05D003890 ORTHO05D004514 3.0e-27 125.2 88 67.0
BraA02t05537Z Brassica rapa HOM05D003890 ORTHO05D004514 3.9e-27 124.8 101 60.4
DCAR_002072 Daucus carota HOM05D003890 ORTHO05D004514 3.9e-27 124.8 88 65.9
Migut.N02317 Erythranthe guttata HOM05D003890 ORTHO05D004514 3.9e-27 124.8 88 68.2
THA.LOC104811066 Tarenaya hassleriana HOM05D003890 ORTHO05D004514 3.9e-27 124.8 90 66.7
TWI32G0323 Tripterygium wilfordii HOM05D003890 ORTHO05D004514 5.1e-27 124.4 87 70.1
AUR62019304 Chenopodium quinoa HOM05D003890 ORTHO05D004514 8.6e-27 123.6 88 65.9
MBI02_g05665_MAGBIO Magnolia biondii HOM05D003890 ORTHO05D004514 8.6e-27 123.6 85 67.1
Cc02_g28010 Coffea canephora HOM05D003890 ORTHO05D004514 1.1e-26 123.2 88 65.9
Cc10_g03220 Coffea canephora HOM05D003890 ORTHO05D004514 1.1e-26 123.2 88 65.9
Sed0005000 Sechium edule HOM05D003890 ORTHO05D004514 1.1e-26 123.2 88 65.9
HanXRQChr16g0524491 Helianthus annuus HOM05D003890 ORTHO05D004514 1.9e-26 122.5 84 67.9
Os03g0807900 Oryza sativa ssp. japonica HOM05D003890 ORTHO05D004514 1.9e-26 122.5 85 69.4
SGA_v2.0_scaffold8G04590 Striga asiatica HOM05D003890 ORTHO05D004514 1.9e-26 122.5 88 65.9
BraA03t10284Z Brassica rapa HOM05D003890 ORTHO05D004514 3.3e-26 121.7 102 58.8
Lj1A330T24 Lonicera japonica HOM05D003890 ORTHO05D004514 3.3e-26 121.7 89 67.4
MELO3C014593.2 Cucumis melo HOM05D003890 ORTHO05D004514 4.3e-26 121.3 88 63.6
Peaxi162Scf00004g02340 Petunia axillaris HOM05D003890 ORTHO05D004514 5.6e-26 120.9 85 69.4
Solyc11g065740.2 Solanum lycopersicum HOM05D003890 ORTHO05D004514 7.3e-26 120.6 88 65.9
Sopen11g025500 Solanum pennellii HOM05D003890 ORTHO05D004514 7.3e-26 120.6 88 65.9
ClCG02G023230 Citrullus lanatus HOM05D003890 ORTHO05D004514 9.5e-26 120.2 88 63.6
CsaV3_4G024270 Cucumis sativus L. HOM05D003890 ORTHO05D004514 9.5e-26 120.2 88 63.6
Oeu016684.1 Olea europaea HOM05D003890 ORTHO05D004514 9.5e-26 120.2 85 69.4
PGR119G1229 Punica granatum HOM05D003890 ORTHO05D004514 9.5e-26 120.2 88 64.8
Lsat_1_v5_gn_1_66000 Lactuca sativa HOM05D003890 ORTHO05D004514 1.2e-25 119.8 88 65.9
MSTRG.18426 Avicennia marina HOM05D003890 ORTHO05D004514 1.6e-25 119.4 88 63.6
ECA240G2592 Erigeron canadensis HOM05D003890 ORTHO05D004514 1.6e-25 119.4 85 67.1
DCAR_003214 Daucus carota HOM05D003890 ORTHO05D004514 2.1e-25 119.0 83 67.5
ECA233G4357 Erigeron canadensis HOM05D003890 ORTHO05D004514 2.1e-25 119.0 85 68.2
Oeu001480.1 Olea europaea HOM05D003890 ORTHO05D004514 2.1e-25 119.0 85 69.4
Os07g0569600 Oryza sativa ssp. japonica HOM05D003890 ORTHO05D004514 2.1e-25 119.0 85 63.5
arahy.Tifrunner.gnm1.ann1.HEYT23 Arachis hypogaea HOM05D003890 ORTHO05D004514 3.6e-25 118.2 84 69.0
CAN.G599.2 Capsicum annuum HOM05D003890 ORTHO05D004514 3.6e-25 118.2 88 63.6
Migut.D00602 Erythranthe guttata HOM05D003890 ORTHO05D004514 3.6e-25 118.2 88 61.4
HanXRQChr02g0056201 Helianthus annuus HOM05D003890 ORTHO05D004514 3.6e-25 118.2 85 67.1
PGSC0003DMG400007341 Solanum tuberosum HOM05D003890 ORTHO05D004514 4.7e-25 117.9 88 63.6
Lsat_1_v5_gn_6_47921 Lactuca sativa HOM05D003890 ORTHO05D004514 8.1e-25 117.1 85 67.1
Zm00001eb324740 Zea mays HOM05D003890 ORTHO05D004514 8.1e-25 117.1 83 65.1
MSTRG.17029 Avicennia marina HOM05D003890 ORTHO05D004514 1.1e-24 116.7 87 62.1
arahy.Tifrunner.gnm1.ann1.13C5F2 Arachis hypogaea HOM05D003890 ORTHO05D004514 1.8e-24 115.9 76 78.9
unitig_22.g6202 Utricularia gibba HOM05D003890 ORTHO05D004514 4.0e-24 114.8 88 61.4
HPP92_024873 Vanilla planifolia HOM05D003890 ORTHO05D004514 4.0e-24 114.8 107 57.0
SalBow6G3376 Salvia bowleyana HOM05D003890 ORTHO05D004514 6.8e-24 114.0 88 61.4
SalBow6G5214 Salvia bowleyana HOM05D003890 ORTHO05D004514 6.8e-24 114.0 88 61.4
MSTRG.21378 Avicennia marina HOM05D003890 ORTHO05D004514 8.9e-24 113.6 88 62.5
SGA_v2.0_scaffold3G01504 Striga asiatica HOM05D003890 ORTHO05D004514 2.0e-23 112.5 87 63.2
Pp3c12_1270 Physcomitrium patens HOM05D003890 ORTHO05D004514 4.4e-23 111.3 84 64.3
unitig_8.g2995 Utricularia gibba HOM05D003890 ORTHO05D004514 4.4e-23 111.3 85 62.4
Nitab4.5_0001587g0060 Nicotiana tabacum HOM05D003890 ORTHO05D004514 5.8e-23 110.9 88 61.4
Nitab4.5_0002741g0130 Nicotiana tabacum HOM05D003890 ORTHO05D004514 2.2e-22 109.0 88 60.2
SMO275G0040 Selaginella moellendorffii HOM05D003890 ORTHO05D004514 2.2e-22 109.0 84 64.3
Pp3c9_10480 Physcomitrium patens HOM05D003890 ORTHO05D004514 2.9e-22 108.6 84 64.3
MELO3C015193.2 Cucumis melo HOM05D003890 ORTHO05D004514 3.8e-22 108.2 75 68.0
Lsat_1_v5_gn_4_31621 Lactuca sativa HOM05D003890 ORTHO05D004514 4.9e-22 107.8 81 64.2
Mapoly0069s0007 Marchantia polymorpha HOM05D003890 ORTHO05D004514 4.9e-22 107.8 84 64.3
Eucgr.B03687 Eucalyptus grandis HOM05D003890 ORTHO05D004514 6.4e-22 107.5 75 69.3
Sopen01g034250 Solanum pennellii HOM05D003890 ORTHO05D004514 1.1e-21 106.7 88 56.8
Peaxi162Scf00953g00113 Petunia axillaris HOM05D003890 ORTHO05D004514 1.4e-21 106.3 88 56.8
SEGI_02367 Sequoiadendron giganteum HOM05D003890 ORTHO05D004514 1.4e-21 106.3 84 60.7
MSTRG.28066 Avicennia marina HOM05D003890 ORTHO05D004514 3.2e-21 105.1 83 57.8
Nitab4.5_0001186g0010 Nicotiana tabacum HOM05D003890 ORTHO05D004514 3.2e-21 105.1 88 55.7
Nitab4.5_0004290g0020 Nicotiana tabacum HOM05D003890 ORTHO05D004514 3.2e-21 105.1 88 55.7
Solyc01g087190.4 Solanum lycopersicum HOM05D003890 ORTHO05D004514 3.2e-21 105.1 88 55.7
CAN.G1560.2 Capsicum annuum HOM05D003890 ORTHO05D004514 1.2e-20 103.2 86 55.8
AagrBONN_evm.TU.Sc2ySwM_228.2147 Anthoceros agrestis HOM05D003890 ORTHO05D004514 1.6e-20 102.8 83 62.7
Mapoly0002s0228 Marchantia polymorpha HOM05D003890 ORTHO05D004514 3.5e-20 101.7 84 61.9
CBR_g21098 Chara braunii HOM05D003890 ORTHO05D004514 1.0e-19 100.1 84 57.1
PGSC0003DMG400006801 Solanum tuberosum HOM05D003890 ORTHO05D004514 3.0e-19 98.6 94 52.1
MBI04_g40116_MAGBIO Magnolia biondii HOM05D003890 ORTHO05D004514 8.7e-19 97.1 97 50.5
CSS0039551 Camellia sinensis var. sinensis HOM05D003890 ORTHO05D004514 4.3e-18 94.7 54 77.8
AUR62000123 Chenopodium quinoa HOM05D003890 ORTHO05D004514 3.1e-16 88.6 55 69.1
arahy.Tifrunner.gnm1.ann1.V44IJD Arachis hypogaea HOM05D003890 ORTHO05D004514 1.5e-15 86.3 84 57.1
BcaC04g19383 Brassica carinata HOM05D003890 ORTHO05D004514 1.5e-15 86.3 55 67.3
HanXRQChr01g0018191 Helianthus annuus HOM05D003890 ORTHO05D004514 1.1e-13 80.1 88 45.5
C09p56300 Brassica napus HOM05D003890 ORTHO05D004514 1.2e-12 76.6 69 53.6
BolC9t58499H Brassica oleracea HOM05D003890 ORTHO05D004514 1.2e-12 76.6 69 53.6
Nn7g36206 Nelumbo nucifera HOM05D003890 ORTHO05D004514 2.7e-12 75.5 88 47.7
Ah.06g194180 Amaranthus hybridus HOM05D003890 ORTHO05D004514 1.7e-11 72.8 82 45.1
Sc09g0000720 Simmondsia chinensis HOM05D003890 ORTHO05D004514 2.3e-11 72.4 53 64.2
Sp6g24540 Schrenkiella parvula HOM05D003890 ORTHO05D004514 7.3e-10 67.4 35 77.1
A10p19900 Brassica napus HOM05D003890 ORTHO05D004514 2.8e-09 65.5 35 74.3
BcaC04g19382 Brassica carinata HOM05D000916 ORTHO05D008653 2.0e-07 59.3 37 67.6


User provided reference genes

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