Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.0XE69C Arachis hypogaea HOM05D004301 ORTHO05D005124 5.5e-69 264.2 138 100.0
arahy.Tifrunner.gnm1.ann1.6J361A Arachis hypogaea HOM05D004301 ORTHO05D005124 2.1e-68 262.3 138 99.3
arahy.Tifrunner.gnm1.ann1.210EWG Arachis hypogaea HOM05D004301 ORTHO05D005124 6.1e-68 260.8 138 98.6
Phvul.007G037700 Phaseolus vulgaris HOM05D004301 ORTHO05D005124 1.2e-60 236.5 137 89.1
Lj2g0004276 Lotus japonicus HOM05D004301 ORTHO05D005124 2.1e-60 235.7 137 88.3
Lj5g0024394 Lotus japonicus HOM05D004301 ORTHO05D005124 2.1e-60 235.7 137 88.3
Glyma.10G264300 Glycine max HOM05D004301 ORTHO05D005124 6.1e-60 234.2 137 88.3
Medtr7g037020 Medicago truncatula HOM05D004301 ORTHO05D005124 5.1e-59 231.1 137 84.7
Ca_26119_v3 Cicer arietinum L. HOM05D004301 ORTHO05D005124 3.3e-58 228.4 137 85.4
Psat3g175280 Pisum sativum HOM05D004301 ORTHO05D005124 5.7e-58 227.6 138 85.5
TPR.G23756 Trifolium pratense HOM05D004301 ORTHO05D005124 2.2e-57 225.7 137 83.9
Gohir.D06G153800 Gossypium hirsutum HOM05D004301 ORTHO05D005124 3.7e-57 224.9 138 84.1
Gorai.010G179800 Gossypium raimondii HOM05D004301 ORTHO05D005124 3.7e-57 224.9 138 84.1
Lalb_Chr17g0338691 Lupinus albus HOM05D004301 ORTHO05D005124 1.1e-56 223.4 138 84.1
Duzib235G0809 Durio zibethinus HOM05D004301 ORTHO05D005124 1.8e-56 222.6 138 84.1
Cpa.g.sc198.42 Carica papaya HOM05D004301 ORTHO05D005124 4.1e-56 221.5 138 82.6
Gohir.A06G147900 Gossypium hirsutum HOM05D004301 ORTHO05D005124 4.1e-56 221.5 138 83.3
Lj1A1229G41 Lonicera japonica HOM05D004301 ORTHO05D005124 4.1e-56 221.5 140 83.6
Ciclev10017125m.g Citrus clementina HOM05D004301 ORTHO05D005124 7.0e-56 220.7 138 81.2
VMungo0720G3170 Vigna mungo HOM05D004301 ORTHO05D005124 7.0e-56 220.7 172 71.5
Nitab4.5_0007007g0030 Nicotiana tabacum HOM05D004301 ORTHO05D005124 1.5e-55 219.5 139 83.5
Nitab4.5_0007482g0040 Nicotiana tabacum HOM05D004301 ORTHO05D005124 1.5e-55 219.5 139 83.5
PGSC0003DMG400016459 Solanum tuberosum HOM05D004301 ORTHO05D005124 1.5e-55 219.5 139 83.5
Thecc.06G088100 Theobroma cacao HOM05D004301 ORTHO05D005124 1.5e-55 219.5 138 82.6
Manes.03G210700 Manihot esculenta HOM05D004301 ORTHO05D005124 3.5e-55 218.4 138 84.8
Sopen02g025120 Solanum pennellii HOM05D004301 ORTHO05D005124 4.5e-55 218.0 139 82.7
CSS0003131 Camellia sinensis var. sinensis HOM05D004301 ORTHO05D005124 1.0e-54 216.9 138 81.9
Atru.chr10.2203 Acer truncatum HOM05D004301 ORTHO05D005124 1.3e-54 216.5 140 81.4
Dinv18010 Davidia involucrata HOM05D004301 ORTHO05D005124 1.3e-54 216.5 138 81.2
Hund21400 Selenicereus undatus HOM05D004301 ORTHO05D005124 2.2e-54 215.7 139 81.3
Solyc02g080430.3 Solanum lycopersicum HOM05D004301 ORTHO05D005124 2.2e-54 215.7 139 82.0
CSS0040354 Camellia sinensis var. sinensis HOM05D004301 ORTHO05D005124 2.9e-54 215.3 138 81.2
Prupe.4G022700 Prunus persica HOM05D004301 ORTHO05D005124 3.8e-54 214.9 138 79.7
vmacro03693 Vaccinium macrocarpon HOM05D004301 ORTHO05D005124 3.8e-54 214.9 139 82.7
COL.COLO4_28865 Corchorus olitorius HOM05D004301 ORTHO05D005124 5.0e-54 214.5 138 80.4
CSS0019231 Camellia sinensis var. sinensis HOM05D004301 ORTHO05D005124 6.5e-54 214.2 138 81.2
arahy.Tifrunner.gnm1.ann1.RW8N71 Arachis hypogaea HOM05D004301 ORTHO05D005124 1.1e-53 213.4 114 97.4
CAN.G1175.8 Capsicum annuum HOM05D004301 ORTHO05D005124 1.5e-53 213.0 139 81.3
Rhsim13G0155100 Rhododendron simsii HOM05D004301 ORTHO05D005124 1.9e-53 212.6 139 82.0
Peaxi162Scf00595g00039 Petunia axillaris HOM05D004301 ORTHO05D005124 3.2e-53 211.8 140 80.7
Haze_06785 Corylus avellana HOM05D004301 ORTHO05D005124 4.2e-53 211.5 139 80.6
Cfa000237 Carpinus fangiana HOM05D004301 ORTHO05D005124 5.5e-53 211.1 139 80.6
Potri.004G017100 Populus trichocarpa HOM05D004301 ORTHO05D005124 7.2e-53 210.7 138 79.7
Manes.09G000400 Manihot esculenta HOM05D004301 ORTHO05D005124 9.4e-53 210.3 138 79.7
Sabra04G0009400 Salix brachista HOM05D004301 ORTHO05D005124 9.4e-53 210.3 138 79.7
CiPaw.09G090400 Carya illinoinensis HOM05D004301 ORTHO05D005124 1.2e-52 209.9 141 78.7
Cc00_g00410 Coffea canephora HOM05D004301 ORTHO05D005124 2.1e-52 209.1 141 78.7
RcHm_v2.0_Chr5g0030661 Rosa chinensis HOM05D004301 ORTHO05D005124 2.1e-52 209.1 138 76.8
Rhsim08G0082200 Rhododendron simsii HOM05D004301 ORTHO05D005124 2.7e-52 208.8 139 80.6
MSTRG.7223 Avicennia marina HOM05D004301 ORTHO05D005124 3.6e-52 208.4 140 79.3
TAR626G0955 Trochodendron aralioides HOM05D004301 ORTHO05D005124 3.6e-52 208.4 138 78.3
SalBow8G0640 Salvia bowleyana HOM05D004301 ORTHO05D005124 4.7e-52 208.0 139 78.4
SGA_v2.0_scaffold4G01921 Striga asiatica HOM05D004301 ORTHO05D005124 4.7e-52 208.0 143 76.9
TWI63G1781 Tripterygium wilfordii HOM05D004301 ORTHO05D005124 4.7e-52 208.0 139 79.1
PGR004G0513 Punica granatum HOM05D004301 ORTHO05D005124 1.0e-51 206.8 142 78.2
Cc03_g13960 Coffea canephora HOM05D004301 ORTHO05D005124 1.4e-51 206.5 141 77.3
Migut.M01306 Erythranthe guttata HOM05D004301 ORTHO05D005124 1.4e-51 206.5 140 77.9
FAN16G3380 Fragaria x ananassa HOM05D004301 ORTHO05D005124 1.4e-51 206.5 138 76.8
Sc05g0009100 Simmondsia chinensis HOM05D004301 ORTHO05D005124 2.3e-51 205.7 140 77.1
CARHR252750 Cardamine hirsuta HOM05D004301 ORTHO05D005124 3.0e-51 205.3 141 78.0
CsaV3_4G017560 Cucumis sativus L. HOM05D004301 ORTHO05D005124 5.2e-51 204.5 139 78.4
TAR629G3276 Trochodendron aralioides HOM05D004301 ORTHO05D005124 5.2e-51 204.5 138 76.1
ATR0752G175 Amborella trichopoda HOM05D004301 ORTHO05D005124 1.1e-50 203.4 138 75.4
MELO3C014729.2 Cucumis melo HOM05D004301 ORTHO05D005124 1.5e-50 203.0 139 77.7
RcHm_v2.0_Chr5g0030681 Rosa chinensis HOM05D004301 ORTHO05D005124 1.5e-50 203.0 138 74.6
FvH4_3g18180 Fragaria vesca HOM05D004301 ORTHO05D005124 2.0e-50 202.6 138 76.1
THA.LOC104806300 Tarenaya hassleriana HOM05D004301 ORTHO05D005124 2.0e-50 202.6 140 78.6
Oeu033197.1 Olea europaea HOM05D004301 ORTHO05D005124 2.6e-50 202.2 140 76.4
Carub.0006s3270 Capsella rubella HOM05D004301 ORTHO05D005124 3.3e-50 201.8 140 77.1
QL05p073536 Quercus lobata HOM05D004301 ORTHO05D005124 3.3e-50 201.8 143 76.2
CANSAT56G0804 Cannabis sativa HOM05D004301 ORTHO05D005124 7.4e-50 200.7 141 74.5
QL05p073775 Quercus lobata HOM05D004301 ORTHO05D005124 7.4e-50 200.7 143 75.5
THA.LOC104813057 Tarenaya hassleriana HOM05D004301 ORTHO05D005124 7.4e-50 200.7 140 77.1
Sp6g04160 Schrenkiella parvula HOM05D004301 ORTHO05D005124 1.3e-49 199.9 140 76.4
HPP92_021475 Vanilla planifolia HOM05D004301 ORTHO05D005124 1.3e-49 199.9 138 76.8
FAN12G2174 Fragaria x ananassa HOM05D004301 ORTHO05D005124 1.7e-49 199.5 144 72.9
FAN25G1723 Fragaria x ananassa HOM05D004301 ORTHO05D005124 2.2e-49 199.1 138 73.2
AL6G48270 Arabidopsis lyrata HOM05D004301 ORTHO05D005124 2.8e-49 198.7 140 75.7
AT4G04780 Arabidopsis thaliana HOM05D004301 ORTHO05D005124 2.8e-49 198.7 140 75.7
FAN07G2330 Fragaria x ananassa HOM05D004301 ORTHO05D005124 8.2e-49 197.2 144 72.2
PSO339G4464 Papaver somniferum HOM05D004301 ORTHO05D005124 1.1e-48 196.8 139 76.3
PSO384G5030 Papaver somniferum HOM05D004301 ORTHO05D005124 1.1e-48 196.8 139 76.3
ECA248G0561 Erigeron canadensis HOM05D004301 ORTHO05D005124 3.1e-48 195.3 147 71.4
Oeu037360.1 Olea europaea HOM05D004301 ORTHO05D005124 3.1e-48 195.3 141 75.2
Lsat_1_v5_gn_1_128621 Lactuca sativa HOM05D004301 ORTHO05D005124 1.2e-47 193.4 164 67.7
DCAR_008141 Daucus carota HOM05D004301 ORTHO05D005124 4.5e-47 191.4 141 74.5
unitig_748.g7577 Utricularia gibba HOM05D004301 ORTHO05D005124 4.5e-47 191.4 140 72.9
Aqoxy3G02575 Aquilegia oxysepala HOM05D004301 ORTHO05D005124 1.0e-46 190.3 148 70.9
FvH4_4g21200 Fragaria vesca HOM05D004301 ORTHO05D005124 1.7e-46 189.5 148 69.6
A09p26100 Brassica napus HOM05D004301 ORTHO05D005124 2.2e-46 189.1 151 70.9
BraA09t38177Z Brassica rapa HOM05D004301 ORTHO05D005124 2.2e-46 189.1 151 70.9
Aa31LG9G9690 Aethionema arabicum HOM05D004301 ORTHO05D005124 5.0e-46 188.0 140 72.9
CDE05G1190 Ceratophyllum demersum HOM05D004301 ORTHO05D005124 5.0e-46 188.0 138 73.9
HanXRQChr10g0285201 Helianthus annuus HOM05D004301 ORTHO05D005124 5.0e-46 188.0 160 66.2
RcHm_v2.0_Chr4g0426811 Rosa chinensis HOM05D004301 ORTHO05D005124 5.0e-46 188.0 146 70.5
BcaB01g01837 Brassica carinata HOM05D004301 ORTHO05D005124 6.5e-46 187.6 149 71.1
MBI16_g31789_MAGBIO Magnolia biondii HOM05D004301 ORTHO05D005124 5.5e-45 184.5 152 66.4
BolC9t56147H Brassica oleracea HOM05D004301 ORTHO05D005124 7.2e-45 184.1 152 68.4
BcaC04g21325 Brassica carinata HOM05D004301 ORTHO05D005124 1.6e-44 183.0 155 67.1
C09p33120 Brassica napus HOM05D004301 ORTHO05D005124 1.6e-44 183.0 155 67.1
CDE04G1315 Ceratophyllum demersum HOM05D004301 ORTHO05D005124 1.6e-44 183.0 138 71.7
Ah.09g234990 Amaranthus hybridus HOM05D004301 ORTHO05D005124 4.7e-44 181.4 176 59.1
EL10Ac8g20032 Beta vulgaris HOM05D004301 ORTHO05D005124 8.0e-44 180.6 168 60.1
Cc00_g35050 Coffea canephora HOM05D004301 ORTHO05D005124 8.0e-44 180.6 141 70.2
PSO170G5652 Papaver somniferum HOM05D004301 ORTHO05D005124 1.0e-43 180.3 139 70.5
Nn7g37600 Nelumbo nucifera HOM05D004301 ORTHO05D005124 3.0e-43 178.7 112 83.9
MD10G1319700 Malus domestica HOM05D004301 ORTHO05D005124 6.8e-43 177.6 138 66.7
AUR62012686 Chenopodium quinoa HOM05D004301 ORTHO05D005124 8.8e-43 177.2 136 71.3
C02p40060 Brassica napus HOM05D004301 ORTHO05D005124 3.4e-42 175.3 135 72.6
SEGI_29072 Sequoiadendron giganteum HOM05D004301 ORTHO05D005124 9.8e-42 173.7 138 65.2
ClCG02G024420 Citrullus lanatus HOM05D005410 ORTHO05D007394 1.7e-41 172.9 113 81.4
BraA02t07511Z Brassica rapa HOM05D004301 ORTHO05D005124 2.7e-39 165.6 134 69.4
Mapoly0013s0130 Marchantia polymorpha HOM05D004301 ORTHO05D005124 2.2e-38 162.5 138 58.7
SEGI_24906 Sequoiadendron giganteum HOM05D004301 ORTHO05D005124 6.5e-38 161.0 168 53.0
FAN20G0317 Fragaria x ananassa HOM05D004301 ORTHO05D005124 1.1e-37 160.2 115 73.9
AagrBONN_evm.TU.Sc2ySwM_362.2472 Anthoceros agrestis HOM05D004301 ORTHO05D005124 7.2e-37 157.5 139 60.4
Duzib192G0451 Durio zibethinus HOM05D004301 ORTHO05D005124 7.2e-37 157.5 112 75.0
PSO017G1667 Papaver somniferum HOM05D004301 ORTHO05D005124 1.2e-36 156.8 113 74.3
unitig_32.g11531 Utricularia gibba HOM05D004301 ORTHO05D005124 4.7e-36 154.8 119 71.4
PSO478G1674 Papaver somniferum HOM05D004301 ORTHO05D005124 3.4e-34 148.7 128 68.8
Pp3c1_16690 Physcomitrium patens HOM05D004301 ORTHO05D005124 4.4e-34 148.3 136 58.1
Prupe.1G108500 Prunus persica HOM05D004301 ORTHO05D005124 3.1e-32 142.1 131 62.6
A02p25250 Brassica napus HOM05D004301 ORTHO05D005124 7.0e-32 141.0 135 61.5
Zm00001eb173130 Zea mays HOM05D004301 ORTHO05D005124 4.5e-31 138.3 169 50.9
BolC2t10033H Brassica oleracea HOM05D004301 ORTHO05D005124 7.7e-31 137.5 135 62.2
Psat5g160160 Pisum sativum HOM05D004301 ORTHO05D005124 1.3e-30 136.7 85 83.5
BcaC03g16234 Brassica carinata HOM05D004301 ORTHO05D005124 6.6e-30 134.4 109 70.6
Psat5g160080 Pisum sativum HOM05D004301 ORTHO05D005124 6.6e-30 134.4 85 82.4
SMO200G0228 Selaginella moellendorffii HOM05D004301 ORTHO05D005124 1.5e-29 133.3 155 52.9
Oeu033198.1 Olea europaea HOM05D004301 ORTHO05D005124 2.5e-29 132.5 97 73.2
Actinidia26923 Actinidia chinensis HOM05D004301 ORTHO05D005124 3.3e-29 132.1 111 65.8
Gorai.005G123500 Gossypium raimondii HOM05D004301 ORTHO05D005124 1.8e-27 126.3 81 81.5
Nitab4.5_0003254g0080 Nicotiana tabacum HOM05D004301 ORTHO05D005124 5.2e-27 124.8 80 81.2
CBR_g6572 Chara braunii HOM05D004301 ORTHO05D005124 6.8e-27 124.4 135 51.9
CDE05G0994 Ceratophyllum demersum HOM05D004301 ORTHO05D005124 8.9e-27 124.0 116 60.3
Gohir.D02G172033 Gossypium hirsutum HOM05D004301 ORTHO05D005124 1.3e-25 120.2 80 78.8
Gohir.D09G045050 Gossypium hirsutum HOM05D004301 ORTHO05D005124 1.3e-25 120.2 80 77.5
Gorai.006G117000 Gossypium raimondii HOM05D004301 ORTHO05D005124 1.7e-25 119.8 79 79.7
Gohir.D10G075550 Gossypium hirsutum HOM05D004301 ORTHO05D005124 3.7e-25 118.6 76 82.9
BcaC03g16233 Brassica carinata HOM05D004301 ORTHO05D005124 6.3e-25 117.9 115 61.7
Eucgr.G02030 Eucalyptus grandis HOM05D004301 ORTHO05D005124 4.6e-23 111.7 69 82.6
AUR62021971 Chenopodium quinoa HOM05D004301 ORTHO05D005124 5.9e-23 111.3 69 81.2
BcaB05g23708 Brassica carinata HOM05D004301 ORTHO05D005124 1.0e-22 110.5 138 50.0
CAN.G138.7 Capsicum annuum HOM05D004301 ORTHO05D005124 2.3e-22 109.4 130 51.5
Medtr1g107580 Medicago truncatula HOM05D004301 ORTHO05D005124 6.1e-20 101.3 96 59.4
Gorai.001G171600 Gossypium raimondii HOM05D001075 ORTHO05D001779 8.0e-20 100.9 100 58.0
FAN21G3317 Fragaria x ananassa HOM05D004301 ORTHO05D005124 1.0e-19 100.5 69 73.9
Nitab4.5_0003254g0090 Nicotiana tabacum HOM05D004301 ORTHO05D005124 4.9e-17 91.7 58 81.0
RcHm_v2.0_Chr4g0426791 Rosa chinensis HOM05D004301 ORTHO05D005124 7.0e-16 87.8 77 62.3
Os08g0135600 Oryza sativa ssp. japonica HOM05D004301 ORTHO05D005124 1.2e-15 87.0 69 68.1
Aqoxy3G02572 Aquilegia oxysepala HOM05D004301 ORTHO05D005124 3.9e-14 82.0 57 73.7
MCO03G202 Micromonas commoda HOM05D004301 ORTHO05D005124 1.5e-13 80.1 137 40.1
A05p31460 Brassica napus HOM05D004301 ORTHO05D005124 8.1e-12 74.3 72 56.9
BraA05t21985Z Brassica rapa HOM05D004301 ORTHO05D005124 8.1e-12 74.3 72 56.9
SGA_v2.0_scaffold14G06848 Striga asiatica HOM05D004301 ORTHO05D005124 2.4e-08 62.8 58 60.3
C05p45820 Brassica napus HOM05D004301 ORTHO05D005124 5.4e-08 61.6 51 56.9
C05p45830 Brassica napus HOM05D004301 ORTHO05D005124 5.4e-08 61.6 49 59.2
A06p38190 Brassica napus HOM05D004301 ORTHO05D005124 7.1e-08 61.2 104 43.3
BraA06t26734Z Brassica rapa HOM05D004301 ORTHO05D005124 7.1e-08 61.2 104 43.3
BolC5t33302H Brassica oleracea HOM05D004301 ORTHO05D005124 9.2e-08 60.8 51 56.9
BcaB02g10679 Brassica carinata HOM05D004301 ORTHO05D005124 6.6e-06 54.7 44 63.6


User provided reference genes

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