Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.0WG7ZM Arachis hypogaea HOM05D004073 ORTHO05D004785 5.1e-301 1036.9 522 100.0
arahy.Tifrunner.gnm1.ann1.AHDC81 Arachis hypogaea HOM05D004073 ORTHO05D004785 5.3e-80 302.8 176 89.8
arahy.Tifrunner.gnm1.ann1.W5ZFFA Arachis hypogaea HOM05D004073 ORTHO05D004785 2.4e-77 293.9 164 90.2
arahy.Tifrunner.gnm1.ann1.9SIV6F Arachis hypogaea HOM05D004073 ORTHO05D004785 7.1e-77 292.4 176 86.4
VMungo0464G1872 Vigna mungo HOM05D004073 ORTHO05D004785 2.3e-67 260.8 176 76.1
Phvul.004G069300 Phaseolus vulgaris HOM05D004073 ORTHO05D004785 1.5e-66 258.1 177 75.1
Glyma.16G148100 Glycine max HOM05D004073 ORTHO05D004785 4.8e-65 253.1 162 77.2
Lalb_Chr01g0018421 Lupinus albus HOM05D004073 ORTHO05D004785 1.1e-64 251.9 176 73.9
Medtr6g005540 Medicago truncatula HOM05D004073 ORTHO05D004785 6.9e-64 249.2 180 70.0
Medtr4g086170 Medicago truncatula HOM05D004073 ORTHO05D004785 2.0e-63 247.7 180 69.4
TPR.G8724 Trifolium pratense HOM05D004073 ORTHO05D004785 3.4e-63 246.9 181 71.3
Ca_04178_v3 Cicer arietinum L. HOM05D004073 ORTHO05D004785 2.2e-62 244.2 176 73.9
Lj3g0026799 Lotus japonicus HOM05D004073 ORTHO05D004785 3.8e-62 243.4 182 70.3
Dinv10322 Davidia involucrata HOM05D004073 ORTHO05D004785 1.0e-59 235.3 180 65.6
Glyma.02G067000 Glycine max HOM05D004073 ORTHO05D004785 1.8e-59 234.6 179 68.7
Oeu005967.2 Olea europaea HOM05D004073 ORTHO05D004785 3.9e-59 233.4 168 67.3
Prupe.4G240000 Prunus persica HOM05D004073 ORTHO05D004785 3.9e-59 233.4 180 64.4
Manes.03G140000 Manihot esculenta HOM05D004073 ORTHO05D004785 1.6e-57 228.0 182 65.4
MSTRG.20573 Avicennia marina HOM05D004073 ORTHO05D004785 2.8e-57 227.3 179 65.4
Ciclev10008892m.g Citrus clementina HOM05D004073 ORTHO05D004785 1.1e-56 225.3 173 64.2
QL08p004797 Quercus lobata HOM05D004073 ORTHO05D004785 1.4e-56 224.9 175 68.0
CiPaw.02G129700 Carya illinoinensis HOM05D004073 ORTHO05D004785 1.8e-56 224.6 180 63.3
Sabra16G0239500 Salix brachista HOM05D004073 ORTHO05D004785 6.9e-56 222.6 177 64.4
Hma1.2p1_0036F.1_g022540 Hydrangea macrophylla HOM05D004073 ORTHO05D004785 9.0e-56 222.2 180 62.2
Peaxi162Scf00529g00814 Petunia axillaris HOM05D004073 ORTHO05D004785 9.0e-56 222.2 160 69.4
Potri.001G366000 Populus trichocarpa HOM05D004073 ORTHO05D004785 1.2e-55 221.9 177 63.3
CiPaw.01G209600 Carya illinoinensis HOM05D004073 ORTHO05D004785 3.4e-55 220.3 160 68.1
TWI39G0963 Tripterygium wilfordii HOM05D004073 ORTHO05D004785 3.4e-55 220.3 179 64.2
Actinidia35391 Actinidia chinensis HOM05D004073 ORTHO05D004785 4.5e-55 219.9 161 66.5
CSS0032183 Camellia sinensis var. sinensis HOM05D004073 ORTHO05D004785 4.5e-55 219.9 175 62.3
Cfa002798 Carpinus fangiana HOM05D004073 ORTHO05D004785 5.9e-55 219.5 180 62.2
Eucgr.F02061 Eucalyptus grandis HOM05D004073 ORTHO05D004785 5.9e-55 219.5 176 64.8
MD11G1201600 Malus domestica HOM05D004073 ORTHO05D004785 5.9e-55 219.5 175 63.4
ClCG09G021180 Citrullus lanatus HOM05D004073 ORTHO05D004785 7.7e-55 219.2 159 67.9
Lalb_Chr15g0083341 Lupinus albus HOM05D004073 ORTHO05D004785 1.0e-54 218.8 161 69.6
Sed0023598 Sechium edule HOM05D004073 ORTHO05D004785 1.0e-54 218.8 159 67.9
GSVIVG01014646001 Vitis vinifera HOM05D004073 ORTHO05D004785 1.0e-54 218.8 180 61.7
Haze_25099 Corylus avellana HOM05D004073 ORTHO05D004785 1.7e-54 218.0 182 62.1
MD00G1099100 Malus domestica HOM05D004073 ORTHO05D004785 1.7e-54 218.0 175 62.9
CsaV3_7G018320 Cucumis sativus L. HOM05D004073 ORTHO05D004785 2.9e-54 217.2 159 67.9
Lj8A177T32 Lonicera japonica HOM05D004073 ORTHO05D004785 3.8e-54 216.9 174 62.1
Manes.15G061500 Manihot esculenta HOM05D004073 ORTHO05D004785 5.0e-54 216.5 182 63.2
Sc03g0011140 Simmondsia chinensis HOM05D004073 ORTHO05D004785 8.5e-54 215.7 187 57.2
RcHm_v2.0_Chr5g0053951 Rosa chinensis HOM05D004073 ORTHO05D004785 1.1e-53 215.3 175 61.1
Lj1A888G37 Lonicera japonica HOM05D004073 ORTHO05D004785 1.9e-53 214.5 175 62.3
Nitab4.5_0000276g0150 Nicotiana tabacum HOM05D004073 ORTHO05D004785 1.9e-53 214.5 160 66.9
Cc02_g24500 Coffea canephora HOM05D004073 ORTHO05D004785 2.5e-53 214.2 175 61.7
Duzib213G1048 Durio zibethinus HOM05D004073 ORTHO05D004785 2.5e-53 214.2 178 63.5
HanXRQChr07g0195741 Helianthus annuus HOM05D004073 ORTHO05D004785 4.2e-53 213.4 177 63.3
PGSC0003DMG400010530 Solanum tuberosum HOM05D004073 ORTHO05D004785 4.2e-53 213.4 208 55.8
CANSAT01G2739 Cannabis sativa HOM05D004073 ORTHO05D004785 5.5e-53 213.0 174 62.6
CSS0000121 Camellia sinensis var. sinensis HOM05D004073 ORTHO05D004785 7.2e-53 212.6 175 59.4
Lsat_1_v5_gn_5_1501 Lactuca sativa HOM05D004073 ORTHO05D004785 9.4e-53 212.2 175 63.4
Sed0026445 Sechium edule HOM05D004073 ORTHO05D004785 9.4e-53 212.2 181 60.2
MELO3C024919.2 Cucumis melo HOM05D004073 ORTHO05D004785 1.2e-52 211.8 153 69.9
MBI16_g14388_MAGBIO Magnolia biondii HOM05D004073 ORTHO05D004785 1.2e-52 211.8 174 62.1
CSS0006286 Camellia sinensis var. sinensis HOM05D004073 ORTHO05D004785 1.6e-52 211.5 175 59.4
Solyc04g056610.3 Solanum lycopersicum HOM05D004073 ORTHO05D004785 1.6e-52 211.5 160 66.2
SalBow3G0415 Salvia bowleyana HOM05D004073 ORTHO05D004785 2.1e-52 211.1 160 63.1
Sopen04g025530 Solanum pennellii HOM05D004073 ORTHO05D004785 2.1e-52 211.1 160 65.6
Nitab4.5_0000083g0020 Nicotiana tabacum HOM05D004073 ORTHO05D004785 2.7e-52 210.7 179 61.5
HanXRQChr05g0159911 Helianthus annuus HOM05D004073 ORTHO05D004785 4.6e-52 209.9 177 60.5
PGR083G0661 Punica granatum HOM05D004073 ORTHO05D004785 6.1e-52 209.5 178 60.7
PGSC0003DMG400003290 Solanum tuberosum HOM05D004073 ORTHO05D004785 6.1e-52 209.5 160 65.0
Hund01907 Selenicereus undatus HOM05D004073 ORTHO05D004785 1.4e-51 208.4 160 61.2
Thecc.07G016400 Theobroma cacao HOM05D004073 ORTHO05D004785 1.8e-51 208.0 178 62.4
SGA_v2.0_scaffold119G32745 Striga asiatica HOM05D004073 ORTHO05D004785 2.3e-51 207.6 197 57.9
VMungo0540G1827 Vigna mungo HOM05D004073 ORTHO05D004785 5.1e-51 206.5 159 66.7
Gohir.A01G090300 Gossypium hirsutum HOM05D004073 ORTHO05D004785 6.7e-51 206.1 175 63.4
arahy.Tifrunner.gnm1.ann1.F1PCFU Arachis hypogaea HOM05D004073 ORTHO05D004785 2.0e-50 204.5 161 63.4
Gohir.D01G075600 Gossypium hirsutum HOM05D004073 ORTHO05D004785 2.5e-50 204.1 176 63.1
Atru.chr2.3668 Acer truncatum HOM05D004073 ORTHO05D004785 3.3e-50 203.8 159 66.0
CAN.G217.4 Capsicum annuum HOM05D004073 ORTHO05D004785 4.3e-50 203.4 160 64.4
Migut.B01283 Erythranthe guttata HOM05D004073 ORTHO05D004785 4.3e-50 203.4 180 58.9
Lj6g0025058 Lotus japonicus HOM05D004073 ORTHO05D004785 4.3e-50 203.4 154 69.5
Hund23121 Selenicereus undatus HOM05D004073 ORTHO05D004785 5.7e-50 203.0 163 60.1
Gorai.002G098800 Gossypium raimondii HOM05D004073 ORTHO05D004785 7.4e-50 202.6 176 62.5
Duzib170G0711 Durio zibethinus HOM05D004073 ORTHO05D004785 1.7e-49 201.4 175 60.6
Gohir.A13G133800 Gossypium hirsutum HOM05D004073 ORTHO05D004785 2.2e-49 201.1 180 59.4
Gohir.D13G137200 Gossypium hirsutum HOM05D004073 ORTHO05D004785 2.2e-49 201.1 180 60.0
Gorai.013G153800 Gossypium raimondii HOM05D004073 ORTHO05D004785 2.2e-49 201.1 180 60.0
Ah.06g181300 Amaranthus hybridus HOM05D004073 ORTHO05D004785 3.7e-49 200.3 157 59.9
arahy.Tifrunner.gnm1.ann1.HAYR03 Arachis hypogaea HOM05D004073 ORTHO05D004785 3.7e-49 200.3 159 62.9
Lj2g0012663 Lotus japonicus HOM05D004073 ORTHO05D004785 3.7e-49 200.3 154 68.8
TAR629G1509 Trochodendron aralioides HOM05D004073 ORTHO05D004785 3.7e-49 200.3 160 61.9
vmacro09656 Vaccinium macrocarpon HOM05D004073 ORTHO05D004785 4.8e-49 199.9 180 56.7
Medtr4g055190 Medicago truncatula HOM05D004073 ORTHO05D004785 1.1e-48 198.7 177 58.2
Rhsim04G0013700 Rhododendron simsii HOM05D004073 ORTHO05D004785 1.1e-48 198.7 181 55.8
COL.COLO4_09810 Corchorus olitorius HOM05D004073 ORTHO05D004785 1.4e-48 198.4 175 58.3
Psat1g055880 Pisum sativum HOM05D004073 ORTHO05D004785 4.1e-48 196.8 176 62.5
DCAR_013227 Daucus carota HOM05D002706 ORTHO05D003253 5.3e-48 196.4 160 62.5
ECA240G0169 Erigeron canadensis HOM05D004073 ORTHO05D004785 1.5e-47 194.9 168 58.3
SalBow6G4871 Salvia bowleyana HOM05D004073 ORTHO05D004785 2.6e-47 194.1 174 57.5
TAR629G1249 Trochodendron aralioides HOM05D004073 ORTHO05D004785 3.4e-47 193.7 158 62.0
unitig_26.g10112 Utricularia gibba HOM05D004073 ORTHO05D004785 4.5e-47 193.4 155 59.4
AT5G55610 Arabidopsis thaliana HOM05D004073 ORTHO05D004785 5.9e-47 193.0 177 55.9
Carub.0008s1598 Capsella rubella HOM05D004073 ORTHO05D004785 7.7e-47 192.6 176 56.2
CDE06G2507 Ceratophyllum demersum HOM05D004073 ORTHO05D004785 7.7e-47 192.6 173 57.2
AL8G31180 Arabidopsis lyrata HOM05D004073 ORTHO05D004785 1.0e-46 192.2 162 58.6
BcaB05g22217 Brassica carinata HOM05D004073 ORTHO05D004785 1.7e-46 191.4 179 55.9
ATR1126G058 Amborella trichopoda HOM05D004073 ORTHO05D004785 2.9e-46 190.7 174 56.9
A02p09590 Brassica napus HOM05D004073 ORTHO05D004785 2.9e-46 190.7 180 56.1
BraA02t06023Z Brassica rapa HOM05D004073 ORTHO05D004785 2.9e-46 190.7 180 56.1
RcHm_v2.0_Chr5g0077271 Rosa chinensis HOM05D004073 ORTHO05D004785 2.9e-46 190.7 159 61.6
Thhalv10014039m.g Eutrema salsugineum HOM05D004073 ORTHO05D004785 5.0e-46 189.9 176 56.2
CARHR268920 Cardamine hirsuta HOM05D004073 ORTHO05D004785 6.5e-46 189.5 176 55.1
FAN25G0469 Fragaria x ananassa HOM05D004073 ORTHO05D004785 8.5e-46 189.1 179 53.6
THA.LOC104817703 Tarenaya hassleriana HOM05D004073 ORTHO05D004785 8.5e-46 189.1 175 57.7
C02p15980 Brassica napus HOM05D004073 ORTHO05D004785 1.1e-45 188.7 178 55.6
Ca_19377_v3 Cicer arietinum L. HOM05D004073 ORTHO05D004785 1.1e-45 188.7 187 55.1
Phvul.006G074800 Phaseolus vulgaris HOM05D004073 ORTHO05D004785 1.1e-45 188.7 174 57.5
Psat7g190200 Pisum sativum HOM05D004073 ORTHO05D004785 1.4e-45 188.3 184 54.3
Sp6g17530 Schrenkiella parvula HOM05D004073 ORTHO05D004785 2.5e-45 187.6 176 54.5
BcaC04g20215 Brassica carinata HOM05D004073 ORTHO05D004785 3.2e-45 187.2 178 55.1
C09p46590 Brassica napus HOM05D004073 ORTHO05D004785 3.2e-45 187.2 178 55.1
BolC9t57510H Brassica oleracea HOM05D004073 ORTHO05D004785 3.2e-45 187.2 178 55.1
FvH4_3g29460 Fragaria vesca HOM05D004073 ORTHO05D004785 3.2e-45 187.2 179 53.1
FAN11G2481 Fragaria x ananassa HOM05D004073 ORTHO05D004785 3.2e-45 187.2 179 53.1
FAN21G2863 Fragaria x ananassa HOM05D004073 ORTHO05D004785 4.2e-45 186.8 179 52.5
A10p12860 Brassica napus HOM05D004073 ORTHO05D004785 5.5e-45 186.4 178 54.5
BraA10t43379Z Brassica rapa HOM05D004073 ORTHO05D004785 5.5e-45 186.4 178 54.5
EL10Ac4g07603 Beta vulgaris HOM05D004073 ORTHO05D004785 1.6e-44 184.9 160 56.2
Aqoxy5G03484 Aquilegia oxysepala HOM05D004073 ORTHO05D004785 2.7e-44 184.1 155 60.6
BcaB08g35921 Brassica carinata HOM05D004073 ORTHO05D004785 3.6e-44 183.7 178 53.4
PSO302G0019 Papaver somniferum HOM05D004073 ORTHO05D004785 6.1e-44 183.0 167 58.1
PSO210G1542 Papaver somniferum HOM05D004073 ORTHO05D004785 2.3e-43 181.0 167 57.5
AUR62017071 Chenopodium quinoa HOM05D004073 ORTHO05D004785 2.6e-42 177.6 186 53.2
AUR62036423 Chenopodium quinoa HOM05D004073 ORTHO05D004785 3.3e-42 177.2 186 52.7
AUR62036429 Chenopodium quinoa HOM05D004073 ORTHO05D004785 7.4e-42 176.0 186 52.2
BolC2t07705H Brassica oleracea HOM05D004073 ORTHO05D004785 9.7e-42 175.6 209 48.8
Aa31LG3G11560 Aethionema arabicum HOM05D004073 ORTHO05D004785 1.1e-40 172.2 219 46.1
CDE04G2763 Ceratophyllum demersum HOM05D004073 ORTHO05D004785 3.5e-39 167.2 155 57.4
Mapoly0030s0146 Marchantia polymorpha HOM05D004073 ORTHO05D004785 1.7e-38 164.9 161 52.2
TPR.G15593 Trifolium pratense HOM05D004073 ORTHO05D004785 3.8e-38 163.7 132 62.1
ECA246G0082 Erigeron canadensis HOM05D004073 ORTHO05D004785 1.1e-37 162.2 168 50.6
MBI16_g14390_MAGBIO Magnolia biondii HOM05D004073 ORTHO05D004785 1.1e-37 162.2 141 56.0
MD00G1008300 Malus domestica HOM05D004073 ORTHO05D004785 1.1e-37 162.2 165 51.5
Os12g0498800 Oryza sativa ssp. japonica HOM05D004073 ORTHO05D004785 3.2e-37 160.6 152 55.3
Pp3c17_1290 Physcomitrium patens HOM05D004073 ORTHO05D004785 1.0e-35 155.6 160 53.8
CANSAT01G1348 Cannabis sativa HOM05D004073 ORTHO05D004785 2.0e-34 151.4 140 56.4
HPP92_020483 Vanilla planifolia HOM05D004073 ORTHO05D004785 9.7e-34 149.1 160 49.4
AagrBONN_evm.TU.Sc2ySwM_117.3546 Anthoceros agrestis HOM05D004073 ORTHO05D004785 1.7e-33 148.3 156 52.6
MBI16_g43434_MAGBIO Magnolia biondii HOM05D004073 ORTHO05D004785 1.8e-32 144.8 118 59.3
Pp3c12_2880 Physcomitrium patens HOM05D004073 ORTHO05D004785 7.0e-32 142.9 159 49.1
SEGI_11688 Sequoiadendron giganteum HOM05D004073 ORTHO05D004785 3.8e-30 137.1 131 52.7
SMO172G0209 Selaginella moellendorffii HOM05D004073 ORTHO05D004785 1.1e-29 135.6 170 45.3
Cpa.g.sc12.171 Carica papaya HOM05D004073 ORTHO05D004785 1.6e-28 131.7 102 61.8
Dinv40845 Davidia involucrata HOM05D004073 ORTHO05D004785 4.0e-27 127.1 97 66.0
Medtr4g055205 Medicago truncatula HOM05D004073 ORTHO05D004785 1.2e-26 125.6 102 60.8
Nn1g07482 Nelumbo nucifera HOM05D004073 ORTHO05D004785 2.0e-26 124.8 100 61.0
Haze_03265 Corylus avellana HOM05D004073 ORTHO05D004785 2.2e-25 121.3 145 49.0
Thecc.07G016200 Theobroma cacao HOM05D004073 ORTHO05D004785 7.2e-21 106.3 95 60.0
CBR_g33924 Chara braunii HOM05D004073 ORTHO05D004785 1.2e-15 89.0 136 40.4
HPP92_020450 Vanilla planifolia HOM05D004073 ORTHO05D004785 1.9e-13 81.6 91 45.1
PGSC0003DMG401021129 Solanum tuberosum HOM05D004073 ORTHO05D004785 6.1e-12 76.6 52 69.2
MBI19_g20151_MAGBIO Magnolia biondii HOM05D004073 ORTHO05D004785 1.5e-10 72.0 164 34.8
GSVIVG01014652001 Vitis vinifera HOM05D004073 ORTHO05D004785 2.0e-10 71.6 53 64.2
Nn1g03214 Nelumbo nucifera HOM05D004073 ORTHO05D004785 3.7e-09 67.4 39 82.1
VMungo1127G1263 Vigna mungo HOM05D004073 ORTHO05D004785 7.0e-08 63.2 36 83.3
PRCOL_00005800 Prasinoderma coloniale HOM05D004073 ORTHO05D004785 4.6e-07 60.5 149 32.2


User provided reference genes

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