Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.0WF02T Arachis hypogaea HOM05D005937 ORTHO05D008151 0.0e+00 1615.1 839 100.0
arahy.Tifrunner.gnm1.ann1.6RBS9T Arachis hypogaea HOM05D005937 ORTHO05D008151 0.0e+00 1600.5 822 99.1
Lalb_Chr23g0277021 Lupinus albus HOM05D005937 ORTHO05D008151 0.0e+00 1322.8 831 78.3
Phvul.001G244900 Phaseolus vulgaris HOM05D005937 ORTHO05D008151 0.0e+00 1322.0 822 78.5
Ca_15144_v3 Cicer arietinum L. HOM05D005937 ORTHO05D008151 0.0e+00 1317.8 827 76.9
Glyma.11G231700 Glycine max HOM05D005937 ORTHO05D008151 0.0e+00 1308.1 824 77.1
Glyma.18G025500 Glycine max HOM05D005937 ORTHO05D008151 0.0e+00 1283.5 822 76.0
Medtr3g071440 Medicago truncatula HOM05D005937 ORTHO05D008151 0.0e+00 1273.1 824 75.2
TPR.G10616 Trifolium pratense HOM05D005937 ORTHO05D008151 0.0e+00 1263.8 827 74.4
Psat5g130440 Pisum sativum HOM05D005937 ORTHO05D008151 0.0e+00 1261.5 822 74.6
Lj6g0019628 Lotus japonicus HOM05D005937 ORTHO05D008151 0.0e+00 1251.5 787 76.6
VMungo1383G1379 Vigna mungo HOM05D005937 ORTHO05D008151 0.0e+00 1250.7 811 76.1
Potri.010G185800 Populus trichocarpa HOM05D005937 ORTHO05D008151 0.0e+00 1181.0 824 69.1
Atru.chr12.85 Acer truncatum HOM05D005937 ORTHO05D008151 0.0e+00 1171.0 821 68.8
Haze_17256 Corylus avellana HOM05D005937 ORTHO05D008151 0.0e+00 1166.8 821 68.7
CiPaw.02G194600 Carya illinoinensis HOM05D005937 ORTHO05D008151 0.0e+00 1154.8 820 67.8
Duzib114G0783 Durio zibethinus HOM05D005937 ORTHO05D008151 0.0e+00 1152.1 817 68.5
GSVIVG01032777001 Vitis vinifera HOM05D005937 ORTHO05D008151 0.0e+00 1148.7 821 68.0
Hma1.2p1_0523F.1_g172080 Hydrangea macrophylla HOM05D005937 ORTHO05D008151 0.0e+00 1148.3 823 67.7
QL08p063536 Quercus lobata HOM05D005937 ORTHO05D008151 0.0e+00 1147.9 826 67.9
MD07G1224900 Malus domestica HOM05D005937 ORTHO05D008151 0.0e+00 1142.9 820 67.1
RcHm_v2.0_Chr1g0370701 Rosa chinensis HOM05D005937 ORTHO05D008151 0.0e+00 1139.0 824 66.7
FvH4_7g24830 Fragaria vesca HOM05D005937 ORTHO05D008151 0.0e+00 1135.9 820 66.5
FAN01G2918 Fragaria x ananassa HOM05D005937 ORTHO05D008151 0.0e+00 1134.8 820 66.5
Sabra10G0143100 Salix brachista HOM05D005937 ORTHO05D008151 0.0e+00 1134.8 887 63.2
Ciclev10030686m.g Citrus clementina HOM05D005937 ORTHO05D008151 0.0e+00 1134.4 818 66.9
Manes.10G010100 Manihot esculenta HOM05D005937 ORTHO05D008151 0.0e+00 1134.0 821 67.2
FAN06G2004 Fragaria x ananassa HOM05D005937 ORTHO05D008151 0.0e+00 1133.2 820 66.3
Migut.F01477 Erythranthe guttata HOM05D005937 ORTHO05D008151 0.0e+00 1132.1 817 66.1
Thecc.10G012700 Theobroma cacao HOM05D005937 ORTHO05D008151 0.0e+00 1124.8 816 66.9
Actinidia00667 Actinidia chinensis HOM05D005937 ORTHO05D008151 0.0e+00 1121.7 823 66.3
Rhsim09G0179300 Rhododendron simsii HOM05D005937 ORTHO05D008151 0.0e+00 1119.0 816 66.2
FAN03G2902 Fragaria x ananassa HOM05D005937 ORTHO05D008151 0.0e+00 1116.7 828 65.5
Gorai.011G291300 Gossypium raimondii HOM05D005937 ORTHO05D008151 0.0e+00 1115.9 823 65.2
TAR633G1521 Trochodendron aralioides HOM05D005937 ORTHO05D008151 0.0e+00 1114.0 817 66.2
Prupe.2G253500 Prunus persica HOM05D005937 ORTHO05D008151 0.0e+00 1112.1 823 65.4
TWI09G1402 Tripterygium wilfordii HOM05D005937 ORTHO05D008151 0.0e+00 1109.0 825 65.2
CSS0046957 Camellia sinensis var. sinensis HOM05D005937 ORTHO05D008151 0.0e+00 1108.6 837 65.1
CsaV3_6G001960 Cucumis sativus L. HOM05D005937 ORTHO05D008151 0.0e+00 1105.9 817 66.3
Gohir.A10G239000 Gossypium hirsutum HOM05D005937 ORTHO05D008151 0.0e+00 1104.0 820 66.0
ClCG11G006010 Citrullus lanatus HOM05D005937 ORTHO05D008151 0.0e+00 1102.4 817 65.6
CANSAT56G2579 Cannabis sativa HOM05D005937 ORTHO05D008151 0.0e+00 1095.9 819 65.2
Eucgr.J00183 Eucalyptus grandis HOM05D005937 ORTHO05D008151 0.0e+00 1094.3 826 64.3
Nn2g10945 Nelumbo nucifera HOM05D005937 ORTHO05D008151 0.0e+00 1087.4 820 64.6
Solyc06g051080.4 Solanum lycopersicum HOM05D005937 ORTHO05D008151 0.0e+00 1078.2 821 63.6
CAN.G19.18 Capsicum annuum HOM05D005937 ORTHO05D008151 0.0e+00 1077.4 818 63.8
Nitab4.5_0000058g0250 Nicotiana tabacum HOM05D005937 ORTHO05D008151 0.0e+00 1076.6 816 63.8
Thhalv10005783m.g Eutrema salsugineum HOM05D005937 ORTHO05D008151 0.0e+00 1075.8 820 64.4
Hund15900 Selenicereus undatus HOM05D005937 ORTHO05D008151 0.0e+00 1075.8 818 63.3
Sed0020446 Sechium edule HOM05D005937 ORTHO05D008151 0.0e+00 1075.5 817 64.5
Sopen06g016900 Solanum pennellii HOM05D005937 ORTHO05D008151 6.0e-312 1074.7 821 63.2
Cpa.g.sc19.149 Carica papaya HOM05D005937 ORTHO05D008151 1.2e-311 1072.8 849 62.1
Ah.16g103770 Amaranthus hybridus HOM05D005937 ORTHO05D008151 1.8e-311 1072.4 820 63.2
Nitab4.5_0000969g0030 Nicotiana tabacum HOM05D005937 ORTHO05D008151 2.1e-310 1068.9 816 64.1
CARHR166110 Cardamine hirsuta HOM05D005937 ORTHO05D008151 7.8e-310 1067.0 816 64.0
Lj1C959G18 Lonicera japonica HOM05D005937 ORTHO05D008151 2.3e-309 1065.4 756 68.0
AL5G37310 Arabidopsis lyrata HOM05D005937 ORTHO05D008151 3.9e-309 1064.7 821 63.7
AT3G56040 Arabidopsis thaliana HOM05D005937 ORTHO05D008151 5.1e-309 1064.3 821 63.7
C08p31350 Brassica napus HOM05D005937 ORTHO05D008151 5.1e-309 1064.3 822 64.1
Sp5g06500 Schrenkiella parvula HOM05D005937 ORTHO05D008151 5.1e-309 1064.3 824 63.3
THA.LOC104811372 Tarenaya hassleriana HOM05D005937 ORTHO05D008151 5.1e-309 1064.3 820 64.0
Carub.0005s2277 Capsella rubella HOM05D005937 ORTHO05D008151 1.5e-308 1062.8 820 63.2
Cfa001293 Carpinus fangiana HOM05D005937 ORTHO05D008151 9.5e-308 1060.1 682 72.9
Aa31LG10G10960 Aethionema arabicum HOM05D005937 ORTHO05D008151 1.2e-307 1059.7 820 63.7
THA.LOC104824329 Tarenaya hassleriana HOM05D005937 ORTHO05D008151 3.1e-306 1055.0 820 63.4
A09p48990 Brassica napus HOM05D005937 ORTHO05D008151 4.0e-306 1054.7 822 63.0
BraA09t40354Z Brassica rapa HOM05D005937 ORTHO05D008151 4.0e-306 1054.7 822 63.0
Duzib106G1087 Durio zibethinus HOM05D005937 ORTHO05D008151 5.2e-306 1054.3 817 63.4
EL10Ac2g04871 Beta vulgaris HOM05D005937 ORTHO05D008151 6.8e-306 1053.9 862 60.0
vmacro10023 Vaccinium macrocarpon HOM05D005937 ORTHO05D008151 2.9e-304 1048.5 859 61.8
Aqoxy4G02431 Aquilegia oxysepala HOM05D005937 ORTHO05D008151 1.7e-301 1039.3 814 61.8
Lsat_1_v5_gn_2_123720 Lactuca sativa HOM05D005937 ORTHO05D008151 1.4e-298 1029.6 805 62.9
Oeu011112.1 Olea europaea HOM05D005937 ORTHO05D008151 5.2e-298 1027.7 906 56.5
DCAR_024814 Daucus carota HOM05D005937 ORTHO05D008151 2.5e-292 1008.8 795 61.6
HanXRQChr07g0203141 Helianthus annuus HOM05D005937 ORTHO05D008151 3.3e-292 1008.4 831 60.0
unitig_60.g25670 Utricularia gibba HOM05D005937 ORTHO05D008151 2.8e-291 1005.4 840 59.2
AUR62012278 Chenopodium quinoa HOM05D005937 ORTHO05D008151 3.6e-291 1005.0 817 60.2
FAN10G1632 Fragaria x ananassa HOM05D005937 ORTHO05D008151 1.3e-288 996.5 841 59.1
PSO170G3027 Papaver somniferum HOM05D005937 ORTHO05D008151 4.9e-288 994.6 818 60.5
PSO017G4998 Papaver somniferum HOM05D005937 ORTHO05D008151 8.4e-288 993.8 817 60.5
ECA238G3710 Erigeron canadensis HOM05D005937 ORTHO05D008151 1.9e-287 992.6 823 59.9
Dinv21757 Davidia involucrata HOM05D005937 ORTHO05D008151 2.1e-286 989.2 833 60.9
PGR044G1548 Punica granatum HOM05D005937 ORTHO05D008151 2.8e-283 978.8 826 60.0
Cc02_g06180 Coffea canephora HOM05D005937 ORTHO05D008151 1.4e-282 976.5 639 71.0
Os05g0468600 Oryza sativa ssp. japonica HOM05D005937 ORTHO05D008151 5.8e-281 971.1 793 59.6
ATR0174G021 Amborella trichopoda HOM05D005937 ORTHO05D008151 1.1e-279 966.8 833 57.5
AUR62022920 Chenopodium quinoa HOM05D005937 ORTHO05D008151 2.5e-276 955.7 740 62.3
Zm00001eb351780 Zea mays HOM05D005937 ORTHO05D008151 3.3e-276 955.3 797 58.6
Gohir.D10G250900 Gossypium hirsutum HOM05D005937 ORTHO05D008151 1.7e-272 943.0 710 65.4
MD01G1156200 Malus domestica HOM05D005937 ORTHO05D008151 1.1e-271 940.3 688 66.6
MBI15_g40751_MAGBIO Magnolia biondii HOM05D005937 ORTHO05D008151 7.1e-271 937.6 849 56.9
Peaxi162Scf00284g00620 Petunia axillaris HOM05D005937 ORTHO05D008151 1.2e-270 936.8 817 58.0
MELO3C008313.2 Cucumis melo HOM05D005937 ORTHO05D008151 2.2e-264 916.0 711 64.7
COL.COLO4_25772 Corchorus olitorius HOM05D005937 ORTHO05D008151 1.5e-252 876.7 783 58.1
Sc10g0002520 Simmondsia chinensis HOM05D005937 ORTHO05D008151 9.4e-239 830.9 652 63.2
AagrBONN_evm.TU.Sc2ySwM_368.2798 Anthoceros agrestis HOM05D005937 ORTHO05D008151 1.6e-238 830.1 822 50.5
SGA_v2.0_scaffold395G50730 Striga asiatica HOM05D005937 ORTHO05D008151 3.6e-238 828.9 683 62.2
Mapoly0007s0127 Marchantia polymorpha HOM05D005937 ORTHO05D008151 3.2e-231 805.8 835 48.0
Pp3c22_15610 Physcomitrium patens HOM05D005937 ORTHO05D008151 7.2e-223 778.1 843 47.0
SMO141G0067 Selaginella moellendorffii HOM05D005937 ORTHO05D008151 2.8e-219 766.1 752 50.7
HPP92_007567 Vanilla planifolia HOM05D005937 ORTHO05D008151 9.2e-202 708.0 771 49.3
CBR_g61489 Chara braunii HOM05D005937 ORTHO05D008151 8.1e-190 668.3 564 54.4
Actinidia00964 Actinidia chinensis HOM05D005937 ORTHO05D008151 1.6e-182 644.0 478 66.5
Hma1.2p1_0523F.1_g172070 Hydrangea macrophylla HOM05D005937 ORTHO05D008151 8.1e-166 588.6 477 61.6
Cre12.g554250 Chlamydomonas reinhardtii HOM05D005937 ORTHO05D008151 6.2e-158 562.4 801 40.2
PRCOL_00004696 Prasinoderma coloniale HOM05D005937 ORTHO05D008151 4.3e-151 539.7 683 41.9
CDE04G2743 Ceratophyllum demersum HOM05D005937 ORTHO05D008151 2.6e-140 503.8 561 49.4
HPP92_007578 Vanilla planifolia HOM05D005937 ORTHO05D008151 4.5e-116 423.3 397 53.1
RhsimUnG0153700 Rhododendron simsii HOM05D005937 ORTHO05D008151 1.6e-113 414.8 296 67.6
Rhsim12G0073000 Rhododendron simsii HOM05D005937 ORTHO05D008151 1.3e-107 395.2 295 65.8
CDE04G2646 Ceratophyllum demersum HOM05D005937 ORTHO05D008151 2.0e-92 344.7 248 63.3
BcaB01g00040 Brassica carinata HOM05D005937 ORTHO05D008151 1.2e-89 335.5 345 53.6
SEGI_34891 Sequoiadendron giganteum HOM05D005937 ORTHO05D008151 3.1e-88 330.9 244 63.1
Aqoxy1G01260 Aquilegia oxysepala HOM05D005937 ORTHO05D008151 2.2e-86 324.7 195 74.9
Aqoxy2G01148 Aquilegia oxysepala HOM05D005937 ORTHO05D008151 4.9e-86 323.6 186 78.0
Aqoxy4G01451 Aquilegia oxysepala HOM05D005937 ORTHO05D008151 3.2e-85 320.9 184 78.3
HPP92_007579 Vanilla planifolia HOM05D005937 ORTHO05D008151 4.7e-81 307.0 217 61.3
MCO05G015 Micromonas commoda HOM05D005937 ORTHO05D008151 1.3e-75 288.9 416 37.5
BolC8t50756H Brassica oleracea HOM05D005937 ORTHO05D008151 6.6e-75 286.6 201 63.7
Ah.00g001390 Amaranthus hybridus HOM05D005937 ORTHO05D008151 7.6e-55 219.9 147 64.6
SEGI_09306 Sequoiadendron giganteum HOM05D005937 ORTHO05D008151 8.1e-49 199.9 144 61.1
vmacro09901 Vaccinium macrocarpon HOM05D003975 ORTHO05D009762 2.3e-27 128.6 194 39.7
Aqoxy4G01461 Aquilegia oxysepala HOM05D005937 ORTHO05D026713 1.4e-13 82.8 173 33.5
Rhsim12G0072900 Rhododendron simsii HOM05D005937 ORTHO05D008151 9.4e-13 80.1 49 79.6
SEGI_37602 Sequoiadendron giganteum HOM05D005937 ORTHO05D026713 5.0e-06 57.8 175 29.7


User provided reference genes

Program Settings