Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.0VWG63 Arachis hypogaea HOM05D006994 ORTHO05D008229 0.0e+00 2509.6 1387 100.0
arahy.Tifrunner.gnm1.ann1.EW4W42 Arachis hypogaea HOM05D006994 ORTHO05D008229 0.0e+00 2310.0 1406 92.7
Glyma.08G310800 Glycine max HOM05D006994 ORTHO05D008229 1.1e-230 804.7 1492 43.1
Glyma.18G104900 Glycine max HOM05D006994 ORTHO05D008229 4.8e-205 719.5 1351 43.3
Glyma.02G288000 Glycine max HOM05D006994 ORTHO05D008229 9.4e-201 705.3 1479 41.0
Phvul.006G035100 Phaseolus vulgaris HOM05D006994 ORTHO05D008229 4.2e-193 679.9 1362 41.6
Glyma.14G026900 Glycine max HOM05D006994 ORTHO05D008229 5.0e-186 656.4 1471 41.3
Phvul.008G190400 Phaseolus vulgaris HOM05D006994 ORTHO05D008229 2.0e-174 617.8 1478 40.4
LjContig00310g0024424 Lotus japonicus HOM05D006994 ORTHO05D008229 4.1e-172 610.1 1452 39.3
TPR.G12670 Trifolium pratense HOM05D006994 ORTHO05D008229 2.2e-170 604.4 1475 38.6
VMungo0647G0009 Vigna mungo HOM05D006994 ORTHO05D008229 2.2e-170 604.4 1475 39.5
Lalb_Chr04g0248671 Lupinus albus HOM05D006994 ORTHO05D008229 6.1e-168 596.3 1292 41.3
Ca_06289_v3 Cicer arietinum L. HOM05D006994 ORTHO05D008229 1.8e-167 594.7 1468 39.2
arahy.Tifrunner.gnm1.ann1.0D28PY Arachis hypogaea HOM05D006994 ORTHO05D008229 7.7e-163 579.3 1359 39.6
arahy.Tifrunner.gnm1.ann1.T2GFFQ Arachis hypogaea HOM05D006994 ORTHO05D008229 1.0e-159 568.9 1535 36.9
Medtr5g091810 Medicago truncatula HOM05D006994 ORTHO05D008229 3.0e-159 567.4 1495 37.0
Psat0s1339g0080 Pisum sativum HOM05D006994 ORTHO05D008229 8.9e-159 565.8 1488 37.2
VMungo0540G1807 Vigna mungo HOM05D006994 ORTHO05D008229 1.2e-142 512.3 1016 41.3
Lalb_Chr17g0348341 Lupinus albus HOM05D006994 ORTHO05D008229 4.5e-102 377.5 764 41.6
QL08p043727 Quercus lobata HOM05D006994 ORTHO05D008229 1.6e-70 272.7 1298 31.0
Prupe.3G170300 Prunus persica HOM05D006994 ORTHO05D008229 2.1e-59 235.7 1292 29.3
Dinv06483 Davidia involucrata HOM05D006994 ORTHO05D008229 1.2e-54 219.9 1283 28.8
Thecc.01G159900 Theobroma cacao HOM05D006994 ORTHO05D008229 1.4e-50 206.5 1272 27.4
Dinv12707 Davidia involucrata HOM05D006994 ORTHO05D008229 2.8e-48 198.7 1288 27.3
Duzib147G0646 Durio zibethinus HOM05D006994 ORTHO05D008229 3.7e-48 198.4 1261 27.7
TAR629G2429 Trochodendron aralioides HOM05D006994 ORTHO05D008229 1.4e-47 196.4 1316 27.4
RcHm_v2.0_Chr2g0150941 Rosa chinensis HOM05D006994 ORTHO05D008229 2.4e-47 195.7 1272 26.8
Gorai.006G007500 Gossypium raimondii HOM05D006994 ORTHO05D008229 1.6e-46 193.0 1256 26.4
Gohir.D09G005900 Gossypium hirsutum HOM05D006994 ORTHO05D008229 2.3e-45 189.1 1258 27.0
VMungo0540G1881 Vigna mungo HOM05D006994 ORTHO05D008229 1.2e-43 183.3 394 37.3
GSVIVG01000809001 Vitis vinifera HOM05D006994 ORTHO05D008229 1.6e-43 183.0 1150 26.6
Ciclev10030533m.g Citrus clementina HOM05D006994 ORTHO05D008229 2.0e-41 176.0 1164 28.0
Psat5g180160 Pisum sativum HOM05D006994 ORTHO05D008229 2.2e-40 172.6 363 41.9
Cfa022555 Carpinus fangiana HOM05D006994 ORTHO05D008229 2.9e-40 172.2 957 27.7
Duzib187G0002 Durio zibethinus HOM05D006994 ORTHO05D008229 1.1e-39 170.2 1262 27.0
Gohir.A09G006700 Gossypium hirsutum HOM05D006994 ORTHO05D008229 1.4e-39 169.9 900 29.0
FAN14G2472 Fragaria x ananassa HOM05D006994 ORTHO05D008229 7.0e-39 167.5 1251 25.3
FvH4_6g37820 Fragaria vesca HOM05D006994 ORTHO05D008229 2.0e-38 166.0 1250 25.4
FAN02G4438 Fragaria x ananassa HOM05D006994 ORTHO05D008229 5.9e-38 164.5 1260 25.6
FAN09G0855 Fragaria x ananassa HOM05D006994 ORTHO05D008229 9.5e-36 157.1 1303 25.8
TAR627G0262 Trochodendron aralioides HOM05D006994 ORTHO05D008229 2.8e-35 155.6 995 26.2
MD17G1141700 Malus domestica HOM05D006994 ORTHO05D008229 3.6e-35 155.2 810 30.7
Atru.chr6.1474 Acer truncatum HOM05D006994 ORTHO05D008229 2.6e-33 149.1 983 25.7
MD09G1155600 Malus domestica HOM05D006994 ORTHO05D008229 6.0e-30 137.9 1278 26.5
COL.COLO4_33721 Corchorus olitorius HOM05D006994 ORTHO05D008229 7.8e-30 137.5 693 27.6
Cpa.g.sc50.71 Carica papaya HOM05D006994 ORTHO05D008229 1.1e-28 133.7 1021 24.6
Nn3g20985 Nelumbo nucifera HOM05D006994 ORTHO05D008229 6.8e-26 124.4 866 28.5
CANSAT64G1952 Cannabis sativa HOM05D006994 ORTHO05D008229 8.9e-26 124.0 1326 25.1
CiPaw.03G188200 Carya illinoinensis HOM05D006994 ORTHO05D008229 3.4e-25 122.1 862 25.8
CSS0008190 Camellia sinensis var. sinensis HOM05D006994 ORTHO05D008229 4.9e-24 118.2 1044 25.0
Psat5g180120 Pisum sativum HOM05D006994 ORTHO05D008229 2.4e-23 115.9 217 41.0
Actinidia32524 Actinidia chinensis HOM05D006994 ORTHO05D008229 1.0e-21 110.5 1142 24.0
TWI59G0403 Tripterygium wilfordii HOM05D006994 ORTHO05D008229 9.5e-20 104.0 609 26.6
Manes.02G085800 Manihot esculenta HOM05D006994 ORTHO05D008229 6.8e-18 97.8 890 27.1
Eucgr.A01960 Eucalyptus grandis HOM05D006994 ORTHO05D008229 1.2e-17 97.1 840 27.0
Cfa022556 Carpinus fangiana HOM05D006994 ORTHO05D008229 5.8e-17 94.7 160 41.2
MELO3C014460.2 Cucumis melo HOM05D006994 ORTHO05D008229 9.9e-17 94.0 815 24.8
Nn6g34417 Nelumbo nucifera HOM05D006994 ORTHO05D008229 1.3e-16 93.6 878 26.0
CiPaw.03G188100 Carya illinoinensis HOM05D006994 ORTHO05D008229 2.2e-16 92.8 206 36.9
Hma1.2p1_0036F.1_g023730 Hydrangea macrophylla HOM05D006994 ORTHO05D008229 4.6e-14 85.1 935 24.1
Lalb_Chr17g0348351 Lupinus albus HOM05D006994 ORTHO05D008229 1.5e-12 80.1 222 29.7
ClCG09G022300 Citrullus lanatus HOM05D006994 ORTHO05D008229 7.3e-12 77.8 825 26.8
CsaV3_6G037970 Cucumis sativus L. HOM05D006994 ORTHO05D008229 2.1e-11 76.3 1285 24.1
COL.COLO4_33720 Corchorus olitorius HOM05D006994 ORTHO05D008229 5.2e-10 71.6 96 43.8
FAN05G3500 Fragaria x ananassa HOM05D006994 ORTHO05D008229 5.2e-10 71.6 230 30.0
vmacro23412 Vaccinium macrocarpon HOM05D006994 ORTHO05D008229 8.9e-10 70.9 934 23.3
Rhsim06G0121200 Rhododendron simsii HOM05D006994 ORTHO05D008229 3.4e-09 68.9 1031 22.7
Medtr3g452530 Medicago truncatula HOM05D006994 ORTHO05D008229 1.3e-08 67.0 371 25.9
Aqoxy4G00195 Aquilegia oxysepala HOM05D006994 ORTHO05D008229 1.7e-08 66.6 1262 23.5
Actinidia11193 Actinidia chinensis HOM05D006994 ORTHO05D008229 6.4e-08 64.7 1178 24.5
Sed0021960 Sechium edule HOM05D006994 ORTHO05D008229 8.4e-08 64.3 1291 23.2
SEGI_04996 Sequoiadendron giganteum HOM05D021706 ORTHO05D018121 2.4e-07 62.8 101 40.6
SEGI_14105 Sequoiadendron giganteum HOM05D021706 ORTHO05D018121 2.4e-07 62.8 101 40.6
Lj1A585G38 Lonicera japonica HOM05D006994 ORTHO05D008229 4.2e-07 62.0 960 22.2
Cc05_g09220 Coffea canephora HOM05D006994 ORTHO05D008229 2.1e-06 59.7 859 23.6
TPR.G2256 Trifolium pratense HOM05D006994 ORTHO05D008229 2.7e-06 59.3 431 25.3
Glyma.18G105000 Glycine max HOM05D006994 ORTHO05D008229 3.5e-06 58.9 105 39.0
TAR627G0146 Trochodendron aralioides HOM05D003788 ORTHO05D004633 4.6e-06 58.5 83 39.8
DCAR_021306 Daucus carota HOM05D006994 ORTHO05D008229 6.0e-06 58.2 802 22.2
SEGI_38675 Sequoiadendron giganteum HOM05D021706 ORTHO05D018121 6.0e-06 58.2 113 36.3
PSO541G2047 Papaver somniferum HOM05D006994 ORTHO05D008229 7.8e-06 57.8 759 24.1


User provided reference genes

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