Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.0UW6S5 Arachis hypogaea HOM05D001860 ORTHO05D004922 1.4e-173 612.8 307 100.0
arahy.Tifrunner.gnm1.ann1.WF3EDY Arachis hypogaea HOM05D001860 ORTHO05D004922 8.5e-163 577.0 343 88.0
arahy.Tifrunner.gnm1.ann1.F2WL4X Arachis hypogaea HOM05D001860 ORTHO05D004922 1.9e-162 575.9 343 88.0
Ca_04822_v3 Cicer arietinum L. HOM05D001860 ORTHO05D004922 1.1e-112 410.6 299 70.2
Lj2g0002858 Lotus japonicus HOM05D001860 ORTHO05D004922 4.0e-112 408.7 325 66.8
Glyma.02G109300 Glycine max HOM05D001860 ORTHO05D004922 6.8e-112 407.9 317 68.5
Phvul.002G083300 Phaseolus vulgaris HOM05D001860 ORTHO05D004922 1.2e-111 407.1 321 66.0
Medtr5g041780 Medicago truncatula HOM05D001860 ORTHO05D004922 2.2e-110 402.9 333 64.9
Psat2g116760 Pisum sativum HOM05D001860 ORTHO05D004922 7.6e-103 377.9 262 73.3
Lalb_Chr04g0255941 Lupinus albus HOM05D001860 ORTHO05D004922 2.9e-102 375.9 368 57.6
Ciclev10032245m.g Citrus clementina HOM05D001860 ORTHO05D004922 6.2e-97 358.2 302 61.6
Atru.chr11.1760 Acer truncatum HOM05D001860 ORTHO05D004922 5.3e-96 355.1 279 64.2
TPR.G36138 Trifolium pratense HOM05D001860 ORTHO05D004922 1.2e-95 354.0 220 77.7
Cfa008963 Carpinus fangiana HOM05D001860 ORTHO05D004922 1.5e-95 353.6 298 63.4
Haze_11992 Corylus avellana HOM05D001860 ORTHO05D004922 9.9e-95 350.9 302 61.9
QL03p068521 Quercus lobata HOM05D001860 ORTHO05D004922 2.9e-94 349.4 289 61.2
CiPaw.06G086900 Carya illinoinensis HOM05D001860 ORTHO05D004922 4.9e-94 348.6 259 68.0
Manes.05G104100 Manihot esculenta HOM05D001860 ORTHO05D004922 2.4e-93 346.3 312 59.9
Potri.008G088500 Populus trichocarpa HOM05D001860 ORTHO05D004922 3.2e-93 345.9 313 60.1
TWI31G0055 Tripterygium wilfordii HOM05D001860 ORTHO05D004922 3.2e-93 345.9 259 65.6
Eucgr.B03211 Eucalyptus grandis HOM05D001860 ORTHO05D004922 1.2e-92 344.0 286 61.9
QL03p068503 Quercus lobata HOM05D001860 ORTHO05D004922 2.7e-92 342.8 285 62.1
Hma1.2p1_1079F.1_g254970 Hydrangea macrophylla HOM05D001860 ORTHO05D004922 4.6e-92 342.0 258 66.7
Sed0020595 Sechium edule HOM05D001860 ORTHO05D004922 7.9e-92 341.3 273 64.5
MD16G1070300 Malus domestica HOM05D001860 ORTHO05D004922 3.0e-91 339.3 305 58.7
CsaV3_5G032890 Cucumis sativus L. HOM05D001860 ORTHO05D004922 6.6e-91 338.2 304 58.6
MELO3C012111.2 Cucumis melo HOM05D001860 ORTHO05D004922 1.5e-90 337.0 274 62.0
CsaV3_5G032900 Cucumis sativus L. HOM05D001860 ORTHO05D004922 1.5e-90 337.0 301 59.1
QL03p068489 Quercus lobata HOM05D001860 ORTHO05D004922 1.3e-89 334.0 252 67.1
FAN07G2810 Fragaria x ananassa HOM05D001860 ORTHO05D004922 1.6e-89 333.6 291 59.8
RcHm_v2.0_Chr4g0439511 Rosa chinensis HOM05D001860 ORTHO05D004922 2.1e-89 333.2 285 59.6
FAN22G1600 Fragaria x ananassa HOM05D001860 ORTHO05D004922 2.8e-89 332.8 293 59.0
FAN12G1253 Fragaria x ananassa HOM05D001860 ORTHO05D004922 3.6e-89 332.4 293 59.4
ClCG05G024130 Citrullus lanatus HOM05D001860 ORTHO05D004922 2.4e-88 329.7 277 62.1
ECA246G1483 Erigeron canadensis HOM05D001860 ORTHO05D004922 6.9e-88 328.2 298 57.4
Gorai.013G087000 Gossypium raimondii HOM05D001860 ORTHO05D004922 2.0e-87 326.6 289 59.2
CANSAT64G2732 Cannabis sativa HOM05D001860 ORTHO05D004922 2.6e-87 326.2 259 62.2
Thecc.02G343500 Theobroma cacao HOM05D001860 ORTHO05D004922 2.6e-87 326.2 280 62.5
GSVIVG01019959001 Vitis vinifera HOM05D001860 ORTHO05D004922 5.8e-87 325.1 311 56.3
Actinidia31905 Actinidia chinensis HOM05D001860 ORTHO05D004922 7.6e-87 324.7 264 63.3
Duzib248G0566 Durio zibethinus HOM05D001860 ORTHO05D004922 7.6e-87 324.7 282 60.6
Lsat_1_v5_gn_3_52040 Lactuca sativa HOM05D001860 ORTHO05D004922 2.2e-86 323.2 311 57.6
HanXRQChr17g0545281 Helianthus annuus HOM05D001860 ORTHO05D004922 3.8e-86 322.4 291 58.8
Oeu028270.1 Olea europaea HOM05D001860 ORTHO05D004922 1.1e-85 320.9 321 55.1
Hund25222 Selenicereus undatus HOM05D001860 ORTHO05D004922 1.1e-85 320.9 261 61.7
Aqoxy5G04114 Aquilegia oxysepala HOM05D001860 ORTHO05D004922 1.4e-85 320.5 283 57.6
CSS0022995 Camellia sinensis var. sinensis HOM05D001860 ORTHO05D004922 2.4e-85 319.7 276 60.5
PSO478G0757 Papaver somniferum HOM05D001860 ORTHO05D004922 2.1e-84 316.6 299 56.2
TAR629G3174 Trochodendron aralioides HOM05D001860 ORTHO05D004922 3.5e-84 315.8 285 58.6
Nn3g17288 Nelumbo nucifera HOM05D001860 ORTHO05D004922 1.3e-83 313.9 283 58.0
FvH4_4g31120 Fragaria vesca HOM05D001860 ORTHO05D004922 1.8e-83 313.5 282 58.5
Cc11_g12800 Coffea canephora HOM05D001860 ORTHO05D004922 2.3e-83 313.2 309 56.0
SalBow2G3316 Salvia bowleyana HOM05D001860 ORTHO05D004922 5.1e-83 312.0 302 54.0
SGA_v2.0_scaffold172G38956 Striga asiatica HOM05D001860 ORTHO05D004922 5.1e-83 312.0 301 53.8
Solyc06g084030.3 Solanum lycopersicum HOM05D001860 ORTHO05D004922 8.7e-83 311.2 306 56.5
Sopen06g035410 Solanum pennellii HOM05D001860 ORTHO05D004922 8.7e-83 311.2 299 56.2
CAN.G771.16 Capsicum annuum HOM05D001860 ORTHO05D004922 2.5e-82 309.7 319 53.6
Lj3A1035T53 Lonicera japonica HOM05D001860 ORTHO05D004922 5.6e-82 308.5 223 67.7
MSTRG.7790 Avicennia marina HOM05D001860 ORTHO05D004922 6.2e-81 305.1 291 54.6
Sabra08G0066100 Salix brachista HOM05D001860 ORTHO05D004922 1.8e-80 303.5 394 48.0
DCAR_026253 Daucus carota HOM05D001016 ORTHO05D003396 6.9e-80 301.6 269 60.2
EL10Ac6g13236 Beta vulgaris HOM05D001860 ORTHO05D004922 1.2e-79 300.8 307 52.8
COL.COLO4_22943 Corchorus olitorius HOM05D001860 ORTHO05D004922 1.5e-79 300.4 301 53.8
Rhsim12G0064600 Rhododendron simsii HOM05D001860 ORTHO05D004922 2.0e-79 300.1 264 59.8
PGSC0003DMG400020063 Solanum tuberosum HOM05D001860 ORTHO05D004922 2.0e-79 300.1 245 60.8
PSO017G0798 Papaver somniferum HOM05D001860 ORTHO05D004922 5.8e-79 298.5 300 55.3
MELO3C012110.2 Cucumis melo HOM05D001860 ORTHO05D004922 1.3e-78 297.4 332 50.9
ATR0564G196 Amborella trichopoda HOM05D001860 ORTHO05D004922 2.2e-78 296.6 260 57.3
AUR62032811 Chenopodium quinoa HOM05D001860 ORTHO05D004922 3.8e-78 295.8 224 65.6
MBI05_g10765_MAGBIO Magnolia biondii HOM05D001860 ORTHO05D004922 4.9e-78 295.4 259 57.9
Nitab4.5_0006433g0040 Nicotiana tabacum HOM05D001860 ORTHO05D004922 6.5e-78 295.0 220 65.0
Migut.L01273 Erythranthe guttata HOM05D001860 ORTHO05D004922 3.2e-77 292.7 223 66.4
AT1G69523 Arabidopsis thaliana HOM05D001860 ORTHO05D004922 2.1e-76 290.0 302 50.3
Peaxi162Scf01530g00038 Petunia axillaris HOM05D001860 ORTHO05D004922 2.1e-76 290.0 223 63.2
CDE04G1474 Ceratophyllum demersum HOM05D001860 ORTHO05D004922 7.9e-76 288.1 263 54.4
Nitab4.5_0001044g0130 Nicotiana tabacum HOM05D001860 ORTHO05D004922 1.0e-75 287.7 220 63.6
Aa31LG4G11250 Aethionema arabicum HOM05D001860 ORTHO05D004922 1.1e-74 284.3 298 50.7
vmacro01268 Vaccinium macrocarpon HOM05D001860 ORTHO05D004922 1.1e-74 284.3 301 52.8
unitig_26.g10298 Utricularia gibba HOM05D001860 ORTHO05D004922 9.6e-74 281.2 287 52.6
Thhalv10018913m.g Eutrema salsugineum HOM05D001860 ORTHO05D004922 2.1e-73 280.0 278 52.2
Sp5g24630 Schrenkiella parvula HOM05D001860 ORTHO05D004922 2.8e-73 279.6 258 53.9
SEGI_35280 Sequoiadendron giganteum HOM05D001860 ORTHO05D004922 8.2e-73 278.1 280 50.7
Os02g0744100 Oryza sativa ssp. japonica HOM05D001860 ORTHO05D004922 4.1e-72 275.8 261 53.6
FAN17G3114 Fragaria x ananassa HOM05D001860 ORTHO05D004922 5.3e-72 275.4 291 53.6
BraA07t30786Z Brassica rapa HOM05D001860 ORTHO05D004922 1.2e-71 274.2 261 54.0
Carub.0002s1616 Capsella rubella HOM05D001860 ORTHO05D004922 1.2e-71 274.2 298 48.7
Zm00001eb194590 Zea mays HOM05D001860 ORTHO05D004922 1.2e-71 274.2 260 54.6
THA.LOC104822044 Tarenaya hassleriana HOM05D001860 ORTHO05D004922 2.0e-71 273.5 291 50.5
CDE06G2440 Ceratophyllum demersum HOM05D001860 ORTHO05D004922 4.5e-71 272.3 243 52.7
BcaB03g15478 Brassica carinata HOM05D001860 ORTHO05D004922 7.6e-71 271.6 300 49.0
AL2G28650 Arabidopsis lyrata HOM05D001860 ORTHO05D004922 1.0e-70 271.2 260 51.5
CARHR062460 Cardamine hirsuta HOM05D001860 ORTHO05D004922 3.8e-70 269.2 308 46.4
Sp5g24640 Schrenkiella parvula HOM05D001860 ORTHO05D004922 3.8e-70 269.2 278 52.2
THA.LOC104822045 Tarenaya hassleriana HOM05D001860 ORTHO05D004922 3.8e-70 269.2 295 49.8
Carub.0002s1615 Capsella rubella HOM05D001860 ORTHO05D004922 6.5e-70 268.5 293 48.8
A07p35850 Brassica napus HOM05D001860 ORTHO05D004922 1.4e-69 267.3 298 46.6
C06p40330 Brassica napus HOM05D001860 ORTHO05D004922 1.9e-69 266.9 260 51.5
Carub.0002s1617 Capsella rubella HOM05D001860 ORTHO05D004922 1.9e-69 266.9 261 51.3
BcaB03g14715 Brassica carinata HOM05D001860 ORTHO05D004922 4.2e-69 265.8 260 51.2
Prupe.1G276900 Prunus persica HOM05D001860 ORTHO05D004922 7.2e-69 265.0 246 58.5
AT1G69526 Arabidopsis thaliana HOM05D001860 ORTHO05D004922 9.3e-69 264.6 261 51.7
BcaB03g14720 Brassica carinata HOM05D001860 ORTHO05D004922 2.1e-68 263.5 302 47.4
HPP92_016837 Vanilla planifolia HOM05D001860 ORTHO05D004922 2.1e-68 263.5 267 49.8
BcaC08g46392 Brassica carinata HOM05D001860 ORTHO05D004922 6.1e-68 261.9 255 51.4
BolC6t39396H Brassica oleracea HOM05D001860 ORTHO05D004922 1.8e-67 260.4 261 51.0
BolC6t39398H Brassica oleracea HOM05D001860 ORTHO05D004922 1.8e-67 260.4 261 51.0
C06p40340 Brassica napus HOM05D001860 ORTHO05D004922 3.0e-67 259.6 261 51.0
BolC6t39399H Brassica oleracea HOM05D001860 ORTHO05D004922 3.0e-67 259.6 258 50.4
BraA07t31170Z Brassica rapa HOM05D001860 ORTHO05D004922 3.0e-67 259.6 263 50.6
vmacro01267 Vaccinium macrocarpon HOM05D001860 ORTHO05D004922 3.0e-67 259.6 343 45.8
A07p35830 Brassica napus HOM05D001860 ORTHO05D004922 6.7e-67 258.5 263 50.2
A07p35840 Brassica napus HOM05D001860 ORTHO05D004922 6.7e-67 258.5 263 50.2
BraA07t31169Z Brassica rapa HOM05D001860 ORTHO05D004922 6.7e-67 258.5 263 50.2
THA.LOC104822184 Tarenaya hassleriana HOM05D001860 ORTHO05D004922 1.1e-66 257.7 222 57.7
Gohir.A13G076700 Gossypium hirsutum HOM05D001860 ORTHO05D004922 7.4e-66 255.0 218 59.6
BraA07t31171Z Brassica rapa HOM05D001860 ORTHO05D004922 3.7e-65 252.7 290 45.9
Gohir.D13G076400 Gossypium hirsutum HOM05D001860 ORTHO05D004922 5.3e-64 248.8 224 57.6
BcaC08g46390 Brassica carinata HOM05D001860 ORTHO05D004922 6.9e-64 248.4 232 53.0
SMO239G0167 Selaginella moellendorffii HOM05D001860 ORTHO05D004922 2.6e-63 246.5 258 50.0
AagrBONN_evm.TU.Sc2ySwM_368.914 Anthoceros agrestis HOM05D001860 ORTHO05D004922 5.9e-63 245.4 279 48.0
Mapoly0002s0191 Marchantia polymorpha HOM05D001860 ORTHO05D004922 8.5e-62 241.5 263 50.6
C06p40360 Brassica napus HOM05D001860 ORTHO05D004922 1.9e-61 240.4 224 54.0
Pp3c24_6910 Physcomitrium patens HOM05D001860 ORTHO05D004922 3.2e-61 239.6 216 55.6
AL2G28640 Arabidopsis lyrata HOM05D001860 ORTHO05D004922 1.3e-57 227.6 215 56.7
Carub.0002s1614 Capsella rubella HOM05D001860 ORTHO05D004922 8.2e-57 224.9 215 55.3
CARHR062450 Cardamine hirsuta HOM05D001860 ORTHO05D004922 8.2e-57 224.9 216 56.5
BcaC08g46388 Brassica carinata HOM05D001860 ORTHO05D004922 1.1e-56 224.6 209 56.0
BolC6t39394H Brassica oleracea HOM05D001482 ORTHO05D001499 2.4e-56 223.4 209 56.5
A07p35820 Brassica napus HOM05D001482 ORTHO05D001499 2.6e-55 219.9 207 55.6
PGR102G3336 Punica granatum HOM05D001860 ORTHO05D004922 2.6e-55 219.9 179 61.5
BcaB03g14714 Brassica carinata HOM05D001860 ORTHO05D004922 3.4e-55 219.5 209 54.5
AT1G69520 Arabidopsis thaliana HOM05D001860 ORTHO05D004922 4.5e-55 219.2 210 57.1
BraA07t31168Z Brassica rapa HOM05D001482 ORTHO05D001499 4.5e-55 219.2 207 55.1
CARHR062480 Cardamine hirsuta HOM05D001860 ORTHO05D004922 1.3e-54 217.6 200 56.5
Sp5g24610 Schrenkiella parvula HOM05D001860 ORTHO05D004922 1.7e-54 217.2 217 54.4
Thhalv10019583m.g Eutrema salsugineum HOM05D001860 ORTHO05D004922 5.0e-54 215.7 209 55.0
Ah.02g129590 Amaranthus hybridus HOM05D001860 ORTHO05D004922 6.7e-51 205.3 259 45.6
CSS0019961 Camellia sinensis var. sinensis HOM05D001860 ORTHO05D004922 5.3e-48 195.7 162 60.5
C06p40380 Brassica napus HOM05D001482 ORTHO05D001499 1.6e-47 194.1 228 49.1
SMO137G0248 Selaginella moellendorffii HOM05D001860 ORTHO05D004922 3.2e-45 186.4 198 48.5
Sc11g0002060 Simmondsia chinensis HOM05D001860 ORTHO05D004922 3.2e-45 186.4 172 58.1
Dinv16666 Davidia involucrata HOM05D001860 ORTHO05D004922 2.4e-40 170.2 165 58.2
Aa31LG4G11270 Aethionema arabicum HOM05D001860 ORTHO05D004922 4.5e-39 166.0 236 44.5
Oeu028272.1 Olea europaea HOM05D001860 ORTHO05D004922 5.9e-39 165.6 128 63.3
BcaB03g14717 Brassica carinata HOM05D001860 ORTHO05D004922 7.7e-39 165.2 175 48.6
AUR62005816 Chenopodium quinoa HOM05D001860 ORTHO05D004922 1.3e-38 164.5 137 62.0
Sp5g24620 Schrenkiella parvula HOM05D001860 ORTHO05D004922 1.2e-36 157.9 143 55.2
CBR_g41443 Chara braunii HOM05D001860 ORTHO05D004922 7.5e-34 148.7 270 36.7
Cpa.g.sc350.4 Carica papaya HOM05D001860 ORTHO05D004922 6.3e-33 145.6 126 60.3
BcaC08g45887 Brassica carinata HOM05D001860 ORTHO05D004922 1.4e-32 144.4 127 59.1
A07p31570 Brassica napus HOM05D001860 ORTHO05D004922 7.0e-32 142.1 122 59.8
MCO03G556 Micromonas commoda HOM05D001860 ORTHO05D004922 4.5e-31 139.4 235 37.4
C06p36870 Brassica napus HOM05D000005 ORTHO05D042562 1.0e-30 138.3 133 57.1
arahy.Tifrunner.gnm1.ann1.661SM0 Arachis hypogaea HOM05D001860 ORTHO05D004922 3.8e-30 136.3 86 88.4
BolC6t38800H Brassica oleracea HOM05D000005 ORTHO05D042562 5.0e-30 136.0 133 56.4
C06p40370 Brassica napus HOM05D001860 ORTHO05D004922 1.1e-29 134.8 120 55.0
Thhalv10019188m.g Eutrema salsugineum HOM05D001860 ORTHO05D004922 7.2e-29 132.1 143 50.3
PRCOL_00000783 Prasinoderma coloniale HOM05D001860 ORTHO05D004922 7.2e-29 132.1 187 42.2
MCO09G753 Micromonas commoda HOM05D001860 ORTHO05D004922 1.2e-28 131.3 144 45.1
PRCOL_00003589 Prasinoderma coloniale HOM05D001860 ORTHO05D004922 1.4e-27 127.9 189 38.1
Cre07.g342550 Chlamydomonas reinhardtii HOM05D001860 ORTHO05D004922 5.2e-27 125.9 251 34.3
CSS0034144 Camellia sinensis var. sinensis HOM05D001860 ORTHO05D004922 7.8e-23 112.1 83 62.7
VMungo1383G2064 Vigna mungo HOM05D001860 ORTHO05D004922 1.7e-22 110.9 82 70.7
CSS0016207 Camellia sinensis var. sinensis HOM05D001860 ORTHO05D004922 3.3e-21 106.7 76 63.2
TPR.G39184 Trifolium pratense HOM05D001860 ORTHO05D004922 1.8e-16 90.9 90 53.3
Thecc.01G276100 Theobroma cacao HOM05D001860 ORTHO05D004922 7.8e-15 85.5 85 48.2
Actinidia19883 Actinidia chinensis HOM05D001860 ORTHO05D004922 7.3e-13 79.0 89 47.2
CBR_g34579 Chara braunii HOM05D001860 ORTHO05D019626 4.7e-12 76.3 175 35.4
AagrBONN_evm.TU.Sc2ySwM_368.1265 Anthoceros agrestis HOM05D019459 ORTHO05D019626 7.5e-10 68.9 187 29.4
MCO03G203 Micromonas commoda HOM05D023757 ORTHO05D024904 3.7e-09 66.6 151 31.8
Cfa024139 Carpinus fangiana HOM05D001860 ORTHO05D004922 8.3e-09 65.5 184 28.8
PRCOL_00001331 Prasinoderma coloniale HOM05D001860 ORTHO05D004922 9.2e-08 62.0 200 25.5
arahy.Tifrunner.gnm1.ann1.0L29ML Arachis hypogaea HOM05D005383 ORTHO05D006722 2.7e-07 60.5 31 100.0
Zm00001eb254460 Zea mays HOM05D001860 ORTHO05D004922 4.6e-07 59.7 73 46.6
CDE08G0834 Ceratophyllum demersum HOM05D001860 ORTHO05D004922 7.8e-07 58.9 59 45.8
MCO11G161 Micromonas commoda HOM05D019459 ORTHO05D019626 3.9e-06 56.6 124 29.8
arahy.Tifrunner.gnm1.ann1.QQ0AFR Arachis hypogaea HOM05D012042 ORTHO05D086849 5.0e-06 56.2 29 82.8
TWI15G0267 Tripterygium wilfordii HOM05D002609 ORTHO05D002820 5.0e-06 56.2 163 28.2
Cre15.g641875 Chlamydomonas reinhardtii HOM05D023757 ORTHO05D024904 8.6e-06 55.5 295 25.8


User provided reference genes

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