Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.0U7N6T Arachis hypogaea HOM05D005258 ORTHO05D006525 2.6e-272 941.4 462 100.0
arahy.Tifrunner.gnm1.ann1.R5QLIS Arachis hypogaea HOM05D005258 ORTHO05D006525 4.0e-249 864.4 462 93.1
Glyma.18G056300 Glycine max HOM05D005258 ORTHO05D006525 2.9e-199 698.7 462 75.8
Phvul.006G074900 Phaseolus vulgaris HOM05D005258 ORTHO05D006525 1.4e-198 696.4 462 75.3
Lj2g0020421 Lotus japonicus HOM05D005258 ORTHO05D006525 5.5e-198 694.5 463 76.5
Lj6g0021320 Lotus japonicus HOM05D005258 ORTHO05D006525 9.4e-198 693.7 463 76.5
Glyma.11G163000 Glycine max HOM05D005258 ORTHO05D006525 2.7e-197 692.2 462 75.1
Psat5g152360 Pisum sativum HOM05D005258 ORTHO05D006525 3.9e-196 688.3 464 75.2
Ca_15017_v3 Cicer arietinum L. HOM05D005258 ORTHO05D006525 7.4e-195 684.1 464 74.4
Lalb_Chr18g0051461 Lupinus albus HOM05D005258 ORTHO05D006525 5.3e-193 677.9 466 74.2
Medtr3g031280 Medicago truncatula HOM05D005258 ORTHO05D006525 6.1e-189 664.5 415 79.0
TWI75G0534 Tripterygium wilfordii HOM05D005258 ORTHO05D006525 5.0e-175 618.2 487 64.3
QL04p095946 Quercus lobata HOM05D005258 ORTHO05D006525 1.1e-174 617.1 482 65.6
Lj2g0010469 Lotus japonicus HOM05D005258 ORTHO05D006525 3.2e-174 615.5 360 82.8
Duzib168G0041 Durio zibethinus HOM05D005258 ORTHO05D006525 4.2e-174 615.1 399 74.2
Manes.18G136600 Manihot esculenta HOM05D005258 ORTHO05D006525 2.1e-173 612.8 416 70.2
vmacro00112 Vaccinium macrocarpon HOM05D005258 ORTHO05D006525 8.0e-173 610.9 412 72.3
Dinv09684 Davidia involucrata HOM05D005258 ORTHO05D006525 1.4e-172 610.1 416 70.9
Dinv12244 Davidia involucrata HOM05D005258 ORTHO05D006525 1.8e-172 609.8 416 70.7
Sabra13G0123700 Salix brachista HOM05D005258 ORTHO05D006525 5.2e-172 608.2 413 71.2
Actinidia01232 Actinidia chinensis HOM05D005258 ORTHO05D006525 6.8e-172 607.8 416 70.2
Gohir.D08G220900 Gossypium hirsutum HOM05D005258 ORTHO05D006525 1.2e-171 607.1 399 73.4
Gohir.A08G203600 Gossypium hirsutum HOM05D005258 ORTHO05D006525 2.0e-171 606.3 399 73.2
CSS0033097 Camellia sinensis var. sinensis HOM05D005258 ORTHO05D006525 2.6e-171 605.9 483 62.3
Potri.013G153900 Populus trichocarpa HOM05D005258 ORTHO05D006525 4.4e-171 605.1 427 68.4
CSS0008764 Camellia sinensis var. sinensis HOM05D005258 ORTHO05D006525 1.3e-170 603.6 484 62.0
Prupe.6G046100 Prunus persica HOM05D005258 ORTHO05D006525 2.2e-170 602.8 469 64.2
GSVIVG01024619001 Vitis vinifera HOM05D005258 ORTHO05D006525 2.8e-170 602.4 424 69.1
Eucgr.B04012 Eucalyptus grandis HOM05D005258 ORTHO05D006525 3.7e-170 602.1 399 71.9
Gorai.004G234600 Gossypium raimondii HOM05D005258 ORTHO05D006525 1.1e-169 600.5 399 73.2
Lj2C1095G3 Lonicera japonica HOM05D005258 ORTHO05D006525 4.1e-169 598.6 477 63.9
TPR.G25689 Trifolium pratense HOM05D005258 ORTHO05D006525 5.4e-169 598.2 354 82.2
MD11G1060300 Malus domestica HOM05D005258 ORTHO05D006525 7.0e-169 597.8 469 63.3
THA.LOC104813633 Tarenaya hassleriana HOM05D005258 ORTHO05D006525 9.2e-169 597.4 399 71.2
Cpa.g.sc53.44 Carica papaya HOM05D005258 ORTHO05D006525 1.6e-168 596.7 395 71.6
MD03G1058000 Malus domestica HOM05D005258 ORTHO05D006525 2.7e-168 595.9 469 63.3
CANSAT54G1230 Cannabis sativa HOM05D005258 ORTHO05D006525 1.7e-167 593.2 473 62.8
THA.LOC104812325 Tarenaya hassleriana HOM05D005258 ORTHO05D006525 2.9e-167 592.4 399 70.2
Rhsim11G0040500 Rhododendron simsii HOM05D005258 ORTHO05D006525 3.8e-167 592.0 424 67.9
Ciclev10001075m.g Citrus clementina HOM05D005258 ORTHO05D006525 8.6e-167 590.9 399 71.7
MELO3C020493.2 Cucumis melo HOM05D005258 ORTHO05D006525 1.9e-166 589.7 480 64.4
PGR102G1249 Punica granatum HOM05D005258 ORTHO05D006525 2.5e-166 589.3 476 63.0
Lsat_1_v5_gn_9_14481 Lactuca sativa HOM05D005258 ORTHO05D006525 3.6e-165 585.5 409 68.5
Nitab4.5_0015019g0010 Nicotiana tabacum HOM05D005258 ORTHO05D006525 3.6e-165 585.5 474 62.4
FvH4_3g39930 Fragaria vesca HOM05D005258 ORTHO05D006525 6.1e-165 584.7 473 63.4
CsaV3_1G036740 Cucumis sativus L. HOM05D005258 ORTHO05D006525 1.0e-164 583.9 479 63.9
Solyc06g082370.4 Solanum lycopersicum HOM05D005258 ORTHO05D006525 6.8e-164 581.3 454 63.0
PGSC0003DMG400030379 Solanum tuberosum HOM05D005258 ORTHO05D006525 6.8e-164 581.3 477 61.6
Haze_24429 Corylus avellana HOM05D005258 ORTHO05D006525 8.9e-164 580.9 501 61.1
CsaV3_6G022490 Cucumis sativus L. HOM05D005258 ORTHO05D006525 2.0e-163 579.7 480 64.0
Sopen06g033760 Solanum pennellii HOM05D005258 ORTHO05D006525 3.4e-163 578.9 477 61.2
HanXRQChr08g0228541 Helianthus annuus HOM05D005258 ORTHO05D006525 7.5e-163 577.8 454 63.2
CDE06G2080 Ceratophyllum demersum HOM05D005258 ORTHO05D006525 3.7e-162 575.5 384 70.8
Atru.chr1.2577 Acer truncatum HOM05D005258 ORTHO05D006525 1.4e-161 573.5 438 66.0
Sed0015134 Sechium edule HOM05D005258 ORTHO05D006525 1.8e-161 573.2 406 69.2
CARHR017340 Cardamine hirsuta HOM05D005258 ORTHO05D006525 2.4e-161 572.8 428 66.1
FAN11G2675 Fragaria x ananassa HOM05D005258 ORTHO05D006525 3.2e-161 572.4 473 62.8
Sc21g0004960 Simmondsia chinensis HOM05D005258 ORTHO05D006525 3.2e-161 572.4 453 63.6
Carub.0001s1661 Capsella rubella HOM05D005258 ORTHO05D006525 1.3e-159 567.0 428 65.7
MSTRG.21245 Avicennia marina HOM05D005258 ORTHO05D006525 5.0e-159 565.1 473 61.5
Nitab4.5_0002768g0050 Nicotiana tabacum HOM05D005258 ORTHO05D006525 1.1e-158 563.9 474 61.0
CiPaw.14G053300 Carya illinoinensis HOM05D005258 ORTHO05D006525 9.5e-158 560.8 431 66.6
BcaB02g06669 Brassica carinata HOM05D005258 ORTHO05D006525 1.6e-157 560.1 411 65.9
Sp1g15010 Schrenkiella parvula HOM05D005258 ORTHO05D006525 2.1e-157 559.7 400 67.0
AT1G16870 Arabidopsis thaliana HOM05D005258 ORTHO05D006525 3.6e-157 558.9 400 67.0
C05p15090 Brassica napus HOM05D005258 ORTHO05D006525 8.0e-157 557.8 401 67.6
AL1G29040 Arabidopsis lyrata HOM05D005258 ORTHO05D006525 2.3e-156 556.2 400 66.5
TAR624G0064 Trochodendron aralioides HOM05D005258 ORTHO05D006525 2.3e-156 556.2 401 69.6
Aqoxy2G00760 Aquilegia oxysepala HOM05D005258 ORTHO05D006525 5.8e-155 551.6 401 66.3
ECA247G3025 Erigeron canadensis HOM05D005258 ORTHO05D006525 7.5e-155 551.2 406 66.0
Peaxi162Scf00390g00538 Petunia axillaris HOM05D005258 ORTHO05D006525 7.5e-155 551.2 469 61.2
SGA_v2.0_scaffold80G25693 Striga asiatica HOM05D005258 ORTHO05D006525 7.5e-155 551.2 505 56.4
MBI18_g09779_MAGBIO Magnolia biondii HOM05D005258 ORTHO05D006525 1.3e-154 550.4 406 66.7
Thhalv10007506m.g Eutrema salsugineum HOM05D005258 ORTHO05D006525 1.7e-154 550.1 400 66.0
BcaC05g25543 Brassica carinata HOM05D005258 ORTHO05D006525 6.4e-154 548.1 400 66.5
A06p12780 Brassica napus HOM05D005258 ORTHO05D006525 6.4e-154 548.1 401 66.6
Cc01_g14990 Coffea canephora HOM05D005258 ORTHO05D006525 4.1e-153 545.4 486 57.6
Migut.D00841 Erythranthe guttata HOM05D005258 ORTHO05D006525 5.4e-153 545.0 483 57.1
Nn6g33319 Nelumbo nucifera HOM05D005258 ORTHO05D006525 9.2e-153 544.3 350 73.4
SalBow6G5766 Salvia bowleyana HOM05D005258 ORTHO05D006525 1.2e-152 543.9 479 58.0
Cfa011791 Carpinus fangiana HOM05D005258 ORTHO05D006525 1.6e-152 543.5 473 61.3
PSO339G6698 Papaver somniferum HOM05D005258 ORTHO05D006525 5.0e-151 538.5 401 65.1
PSO384G2283 Papaver somniferum HOM05D005258 ORTHO05D006525 3.3e-150 535.8 401 64.3
ClCG03G000160 Citrullus lanatus HOM05D005258 ORTHO05D006525 1.2e-149 533.9 500 58.8
HPP92_026488 Vanilla planifolia HOM05D005258 ORTHO05D006525 1.6e-149 533.5 423 61.5
DCAR_028395 Daucus carota HOM05D005258 ORTHO05D006525 8.1e-149 531.2 371 69.0
Hund19201 Selenicereus undatus HOM05D005258 ORTHO05D006525 1.1e-148 530.8 424 63.2
Os07g0202900 Oryza sativa ssp. japonica HOM05D005258 ORTHO05D006525 1.5e-147 526.9 383 65.3
Zm00001eb116240 Zea mays HOM05D005258 ORTHO05D006525 9.8e-147 524.2 425 61.2
Aa31LG7G1300 Aethionema arabicum HOM05D005258 ORTHO05D006525 6.4e-138 495.0 400 63.2
EL10Ac7g15872 Beta vulgaris HOM05D005258 ORTHO05D006525 6.4e-138 495.0 405 61.0
SalBow6G5836 Salvia bowleyana HOM05D005258 ORTHO05D006525 2.5e-134 483.0 447 55.7
CiPaw.13G067700 Carya illinoinensis HOM05D005258 ORTHO05D006525 3.3e-134 482.6 469 56.3
ATR0681G175 Amborella trichopoda HOM05D005258 ORTHO05D006525 6.2e-133 478.4 352 65.9
HPP92_014227 Vanilla planifolia HOM05D005258 ORTHO05D006525 8.1e-133 478.0 337 67.1
Nitab4.5_0002494g0040 Nicotiana tabacum HOM05D005258 ORTHO05D006525 9.9e-131 471.1 455 54.3
unitig_747.g21452 Utricularia gibba HOM05D005258 ORTHO05D006525 1.1e-126 457.6 477 51.6
AUR62036231 Chenopodium quinoa HOM05D005258 ORTHO05D006525 2.6e-123 446.4 405 57.8
Dinv28705 Davidia involucrata HOM05D005258 ORTHO05D006525 9.9e-123 444.5 299 71.9
Ah.08g215410 Amaranthus hybridus HOM05D005258 ORTHO05D006525 1.9e-118 430.3 416 54.8
AUR62009714 Chenopodium quinoa HOM05D005258 ORTHO05D006525 1.9e-118 430.3 405 55.8
SEGI_17098 Sequoiadendron giganteum HOM05D005258 ORTHO05D006525 1.8e-116 423.7 376 55.6
COL.COLO4_11171 Corchorus olitorius HOM05D005258 ORTHO05D006525 1.6e-112 410.6 475 48.8
Rhsim06G0112000 Rhododendron simsii HOM05D005258 ORTHO05D006525 8.7e-111 404.8 403 54.3
Thecc.09G359400 Theobroma cacao HOM05D005258 ORTHO05D006525 3.3e-110 402.9 277 70.8
VMungo0540G0790 Vigna mungo HOM05D005258 ORTHO05D006525 1.1e-108 397.9 207 91.8
TAR633G1809 Trochodendron aralioides HOM05D005258 ORTHO05D006525 3.8e-98 362.8 283 64.0
CAN.G1095.27 Capsicum annuum HOM05D005258 ORTHO05D006525 1.2e-91 341.3 208 74.5
QL01p025810 Quercus lobata HOM05D005258 ORTHO05D006525 4.2e-89 332.8 310 57.4
VMungo0540G2447 Vigna mungo HOM05D005258 ORTHO05D006525 1.8e-87 327.4 236 70.8
Mapoly0019s0020 Marchantia polymorpha HOM05D005258 ORTHO05D006525 9.1e-84 315.1 405 42.7
FAN25G3091 Fragaria x ananassa HOM05D005258 ORTHO05D006525 1.7e-82 310.8 314 53.5
Pp3c11_22290 Physcomitrium patens HOM05D005258 ORTHO05D006525 5.0e-82 309.3 378 45.5
AagrBONN_evm.TU.Sc2ySwM_117.1403 Anthoceros agrestis HOM05D005258 ORTHO05D006525 1.4e-76 291.2 399 41.1
BraA06t24438Z Brassica rapa HOM05D005258 ORTHO05D006525 4.1e-76 289.7 170 81.8
RcHm_v2.0_Chr5g0071911 Rosa chinensis HOM05D005258 ORTHO05D006525 1.5e-73 281.2 245 59.2
RcHm_v2.0_Chr5g0071921 Rosa chinensis HOM05D005258 ORTHO05D006525 1.5e-73 281.2 177 77.4
FAN16G1300 Fragaria x ananassa HOM05D005258 ORTHO05D006525 4.0e-71 273.1 246 57.3
FAN21G1740 Fragaria x ananassa HOM05D005258 ORTHO05D006525 1.7e-69 267.7 245 56.7
CAN.G1095.26 Capsicum annuum HOM05D005258 ORTHO05D000750 2.8e-69 266.9 246 58.1
SMO353G0383 Selaginella moellendorffii HOM05D005258 ORTHO05D006525 4.1e-68 263.1 300 45.0
BolC5t30224H Brassica oleracea HOM05D005258 ORTHO05D006525 2.0e-59 234.2 175 62.3
TAR628G0009 Trochodendron aralioides HOM05D005258 ORTHO05D006525 2.6e-54 217.2 145 73.1
CBR_g40648 Chara braunii HOM05D005258 ORTHO05D006525 2.7e-51 207.2 302 43.0
BcaC07g38819 Brassica carinata HOM05D005258 ORTHO05D006525 8.6e-42 175.6 267 40.8
C08p17580 Brassica napus HOM05D005258 ORTHO05D006525 4.0e-39 166.8 94 81.9
QL01p025812 Quercus lobata HOM05D005258 ORTHO05D006525 4.1e-36 156.8 87 80.5
BolC8t49383H Brassica oleracea HOM05D005258 ORTHO05D006525 1.2e-30 138.7 75 86.7
TAR628G1613 Trochodendron aralioides HOM05D005258 ORTHO05D006525 1.1e-28 132.1 257 37.4
MBI11_g20619_MAGBIO Magnolia biondii HOM05D000666 ORTHO05D001431 2.1e-27 127.9 89 69.7
CAN.G403.12 Capsicum annuum HOM05D005258 ORTHO05D006525 1.7e-26 124.8 130 55.4
BraA08t35049Z Brassica rapa HOM05D005258 ORTHO05D006525 4.7e-24 116.7 67 83.6
PRCOL_00003540 Prasinoderma coloniale HOM05D005258 ORTHO05D006525 3.1e-23 114.0 384 29.7
Lsat_1_v5_gn_3_46641 Lactuca sativa HOM05D005258 ORTHO05D006525 2.2e-21 107.8 124 44.4
CSS0045112 Camellia sinensis var. sinensis HOM05D005258 ORTHO05D006525 3.3e-17 94.0 69 63.8
CAN.G1538.6 Capsicum annuum HOM05D005258 ORTHO05D006525 5.8e-14 83.2 71 60.6
Lsat_1_v5_gn_3_46621 Lactuca sativa HOM05D005258 ORTHO05D006525 9.9e-14 82.4 63 63.5
Cre03.g176700 Chlamydomonas reinhardtii HOM05D005258 ORTHO05D006525 4.3e-09 67.0 67 47.8
A08p31260 Brassica napus HOM05D005258 ORTHO05D006525 2.1e-08 64.7 49 67.3
Lsat_1_v5_gn_7_20901 Lactuca sativa HOM05D005258 ORTHO05D006525 6.9e-07 59.7 36 72.2
SalBow6G4442 Salvia bowleyana HOM05D005258 ORTHO05D010875 6.9e-07 59.7 37 64.9
SalBow1G0607 Salvia bowleyana HOM05D005258 ORTHO05D362423 9.0e-07 59.3 77 40.3


User provided reference genes

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