Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.0RH0I3 Arachis hypogaea HOM05D006002 ORTHO05D007651 2.0e-222 775.4 373 100.0
arahy.Tifrunner.gnm1.ann1.HWL53Q Arachis hypogaea HOM05D006002 ORTHO05D007651 8.6e-218 760.0 373 98.1
Glyma.15G260100 Glycine max HOM05D006002 ORTHO05D007651 6.9e-167 590.9 373 78.0
Glyma.08G167200 Glycine max HOM05D006002 ORTHO05D007651 4.6e-163 578.2 374 76.7
Phvul.005G050900 Phaseolus vulgaris HOM05D006002 ORTHO05D007651 5.3e-159 564.7 374 75.4
Psat3g026200 Pisum sativum HOM05D006002 ORTHO05D007651 1.0e-157 560.5 375 75.2
Lj3g0018048 Lotus japonicus HOM05D006002 ORTHO05D007651 2.9e-157 558.9 374 74.6
Ca_09098_v3 Cicer arietinum L. HOM05D006002 ORTHO05D007651 9.4e-156 553.9 372 74.5
Medtr7g107330 Medicago truncatula HOM05D006002 ORTHO05D007651 5.1e-154 548.1 376 73.9
VMungo1080G0998 Vigna mungo HOM05D001395 ORTHO05D002039 3.6e-147 525.4 365 71.0
QL04p088541 Quercus lobata HOM05D006002 ORTHO05D007651 4.7e-147 525.0 372 66.1
Prupe.4G144100 Prunus persica HOM05D006002 ORTHO05D007651 1.2e-142 510.4 373 66.8
Lalb_Chr25g0284701 Lupinus albus HOM05D006002 ORTHO05D007651 2.1e-139 499.6 285 82.5
Manes.03G102600 Manihot esculenta HOM05D006002 ORTHO05D007651 1.6e-134 483.4 351 67.0
MD10G1197800 Malus domestica HOM05D006002 ORTHO05D007651 2.7e-134 482.6 373 63.0
RcHm_v2.0_Chr5g0027061 Rosa chinensis HOM05D006002 ORTHO05D007651 1.3e-133 480.3 376 64.6
TAR627G1081 Trochodendron aralioides HOM05D006002 ORTHO05D007651 3.8e-133 478.8 354 65.5
Potri.003G221400 Populus trichocarpa HOM05D006002 ORTHO05D007651 9.4e-132 474.2 362 64.6
CANSAT56G1259 Cannabis sativa HOM05D006002 ORTHO05D007651 1.6e-131 473.4 373 63.0
Nn3g20175 Nelumbo nucifera HOM05D006002 ORTHO05D007651 1.4e-130 470.3 356 64.9
TWI53G1943 Tripterygium wilfordii HOM05D006002 ORTHO05D007651 1.5e-129 466.8 346 64.2
Hma1.2p1_0193F.1_g084460 Hydrangea macrophylla HOM05D006002 ORTHO05D007651 5.7e-129 464.9 330 68.8
Hma1.2p1_0193F.1_g084470 Hydrangea macrophylla HOM05D006002 ORTHO05D007651 5.7e-129 464.9 330 68.8
Eucgr.F01438 Eucalyptus grandis HOM05D006002 ORTHO05D007651 1.3e-128 463.8 326 66.3
FAN16G0275 Fragaria x ananassa HOM05D006002 ORTHO05D007651 6.3e-128 461.5 382 60.7
FvH4_3g16091 Fragaria vesca HOM05D006002 ORTHO05D007651 2.4e-127 459.5 324 67.6
FAN11G0453 Fragaria x ananassa HOM05D006002 ORTHO05D007651 2.4e-127 459.5 324 67.9
Haze_07820 Corylus avellana HOM05D006002 ORTHO05D007651 3.1e-127 459.1 308 68.5
Lsat_1_v5_gn_7_116060 Lactuca sativa HOM05D006002 ORTHO05D007651 1.2e-126 457.2 369 62.1
Sopen07g034460 Solanum pennellii HOM05D006002 ORTHO05D007651 1.6e-126 456.8 342 63.7
Actinidia37107 Actinidia chinensis HOM05D006002 ORTHO05D007651 5.9e-126 454.9 333 66.1
CsaV3_2G022200 Cucumis sativus L. HOM05D006002 ORTHO05D007651 7.7e-126 454.5 382 59.2
FAN25G3512 Fragaria x ananassa HOM05D006002 ORTHO05D007651 1.3e-125 453.8 379 60.4
Nitab4.5_0001235g0050 Nicotiana tabacum HOM05D006002 ORTHO05D007651 3.8e-125 452.2 331 64.4
Rhsim04G0006400 Rhododendron simsii HOM05D006002 ORTHO05D007651 6.5e-125 451.4 342 65.2
ClCG11G016270 Citrullus lanatus HOM05D006002 ORTHO05D007651 8.6e-125 451.1 350 62.3
Solyc07g066280.3 Solanum lycopersicum HOM05D006002 ORTHO05D007651 8.6e-125 451.1 342 62.6
CSS0008604 Camellia sinensis var. sinensis HOM05D006002 ORTHO05D007651 1.5e-124 450.3 358 64.8
PGSC0003DMG400022243 Solanum tuberosum HOM05D006002 ORTHO05D007651 2.5e-124 449.5 321 64.5
Sabra03G0164800 Salix brachista HOM05D006002 ORTHO05D007651 3.2e-124 449.1 337 65.9
Ciclev10020646m.g Citrus clementina HOM05D006002 ORTHO05D007651 4.2e-124 448.7 330 64.5
COL.COLO4_25103 Corchorus olitorius HOM05D006002 ORTHO05D007651 7.2e-124 448.0 380 60.8
QL04p088993 Quercus lobata HOM05D006002 ORTHO05D007651 7.2e-124 448.0 293 70.6
Sed0002243 Sechium edule HOM05D006002 ORTHO05D007651 2.1e-123 446.4 351 62.1
CAN.G943.23 Capsicum annuum HOM05D006002 ORTHO05D007651 2.8e-123 446.0 345 63.8
CiPaw.11G062100 Carya illinoinensis HOM05D006002 ORTHO05D007651 3.6e-123 445.7 300 68.7
Nitab4.5_0000294g0110 Nicotiana tabacum HOM05D006002 ORTHO05D007651 4.7e-123 445.3 342 62.6
Cc05_g15870 Coffea canephora HOM05D006002 ORTHO05D007651 1.4e-122 443.7 342 63.7
Ah.04g163380 Amaranthus hybridus HOM05D006002 ORTHO05D007651 1.8e-122 443.4 369 59.6
Hund02296 Selenicereus undatus HOM05D006002 ORTHO05D007651 6.8e-122 441.4 331 64.4
HanXRQChr11g0335201 Helianthus annuus HOM05D006002 ORTHO05D007651 1.5e-121 440.3 346 64.2
vmacro09790 Vaccinium macrocarpon HOM05D006002 ORTHO05D007651 7.5e-121 438.0 337 64.1
THA.LOC104819332 Tarenaya hassleriana HOM05D006002 ORTHO05D007651 2.8e-120 436.0 332 63.0
BcaB02g09782 Brassica carinata HOM05D006002 ORTHO05D007651 4.1e-119 432.2 335 63.0
CARHR278060 Cardamine hirsuta HOM05D006002 ORTHO05D007651 5.4e-119 431.8 375 59.2
Gohir.A05G076100 Gossypium hirsutum HOM05D006002 ORTHO05D007651 5.4e-119 431.8 355 60.8
Peaxi162Scf00232g00102 Petunia axillaris HOM05D006002 ORTHO05D007651 5.4e-119 431.8 342 60.8
Gorai.009G080200 Gossypium raimondii HOM05D006002 ORTHO05D007651 3.5e-118 429.1 355 59.7
Eucgr.F01442 Eucalyptus grandis HOM05D006002 ORTHO05D007651 5.9e-118 428.3 313 63.9
Aqoxy1G01586 Aquilegia oxysepala HOM05D006002 ORTHO05D007651 1.0e-117 427.6 376 58.0
PGR083G2675 Punica granatum HOM05D006002 ORTHO05D007651 1.0e-117 427.6 332 63.0
CDE02G2905 Ceratophyllum demersum HOM05D006002 ORTHO05D007651 1.7e-117 426.8 324 61.7
PSO675G3741 Papaver somniferum HOM05D006002 ORTHO05D007651 2.3e-117 426.4 325 61.5
BcaC01g02672 Brassica carinata HOM05D006002 ORTHO05D007651 6.6e-117 424.9 322 64.3
Thhalv10004403m.g Eutrema salsugineum HOM05D006002 ORTHO05D007651 6.6e-117 424.9 376 57.7
Lj8A185G55 Lonicera japonica HOM05D006002 ORTHO05D007651 8.6e-117 424.5 325 65.8
BolC3t18471H Brassica oleracea HOM05D006002 ORTHO05D007651 1.1e-116 424.1 322 64.3
Aa31LG1G17780 Aethionema arabicum HOM05D006002 ORTHO05D007651 1.9e-116 423.3 321 64.2
A06p30870 Brassica napus HOM05D006002 ORTHO05D007651 1.9e-116 423.3 322 63.7
ECA236G2913 Erigeron canadensis HOM05D006002 ORTHO05D007651 4.3e-116 422.2 344 59.9
AT5G64150 Arabidopsis thaliana HOM05D006002 ORTHO05D007651 9.5e-116 421.0 374 57.2
Sp2g27210 Schrenkiella parvula HOM05D006002 ORTHO05D007651 9.5e-116 421.0 322 62.4
unitig_748.g7639 Utricularia gibba HOM05D006002 ORTHO05D007651 1.6e-115 420.2 350 58.3
BraA06t26026Z Brassica rapa HOM05D006002 ORTHO05D007651 2.1e-115 419.9 317 63.7
Sc03g0007860 Simmondsia chinensis HOM05D006002 ORTHO05D007651 2.1e-115 419.9 342 60.5
Migut.M01570 Erythranthe guttata HOM05D006002 ORTHO05D007651 4.7e-115 418.7 360 57.2
MSTRG.16122 Avicennia marina HOM05D006002 ORTHO05D007651 8.0e-115 417.9 328 61.0
MBI02_g43301_MAGBIO Magnolia biondii HOM05D006002 ORTHO05D007651 3.0e-114 416.0 359 57.4
PSO541G1619 Papaver somniferum HOM05D006002 ORTHO05D007651 3.0e-114 416.0 325 60.0
C03p62100 Brassica napus HOM05D006002 ORTHO05D007651 6.8e-114 414.8 317 64.0
Duzib168G0541 Durio zibethinus HOM05D006002 ORTHO05D007651 1.2e-113 414.1 381 56.7
SGA_v2.0_scaffold7G03564 Striga asiatica HOM05D006002 ORTHO05D007651 1.2e-113 414.1 340 60.9
AL8G41420 Arabidopsis lyrata HOM05D006002 ORTHO05D007651 1.5e-113 413.7 356 59.3
MELO3C010553.2 Cucumis melo HOM05D006002 ORTHO05D007651 3.4e-113 412.5 341 58.9
EL10Ac4g08518 Beta vulgaris HOM05D006002 ORTHO05D007651 2.2e-112 409.8 375 54.9
Carub.0008s2494 Capsella rubella HOM05D006002 ORTHO05D007651 8.3e-112 407.9 322 61.5
SalBow8G1862 Salvia bowleyana HOM05D006002 ORTHO05D007651 9.2e-111 404.4 356 57.3
Thecc.03G324000 Theobroma cacao HOM05D006002 ORTHO05D007651 4.6e-110 402.1 349 57.6
Gohir.D05G078800 Gossypium hirsutum HOM05D006002 ORTHO05D007651 1.8e-106 390.2 323 60.4
Gohir.1Z049302 Gossypium hirsutum HOM05D006002 ORTHO05D007651 3.1e-106 389.4 353 57.2
GSVIVG01020461001 Vitis vinifera HOM05D006002 ORTHO05D007651 3.1e-106 389.4 248 73.0
QL03p043202 Quercus lobata HOM05D006002 ORTHO05D007651 7.5e-105 384.8 261 69.7
MBI02_g20986_MAGBIO Magnolia biondii HOM05D006002 ORTHO05D007651 7.3e-100 368.2 371 53.1
HPP92_001894 Vanilla planifolia HOM05D006002 ORTHO05D004222 3.4e-97 359.4 338 55.3
Dinv42524 Davidia involucrata HOM05D006002 ORTHO05D007651 4.1e-95 352.4 343 54.2
SEGI_37419 Sequoiadendron giganteum HOM05D006002 ORTHO05D007651 4.6e-94 349.0 335 51.6
Atru.chr2.1886 Acer truncatum HOM05D006002 ORTHO05D007651 1.9e-87 327.0 270 60.4
ATR0165G036 Amborella trichopoda HOM05D006002 ORTHO05D007651 3.2e-87 326.2 264 57.2
Cfa022974 Carpinus fangiana HOM05D006002 ORTHO05D007651 1.2e-86 324.3 253 62.5
SMO145G0236 Selaginella moellendorffii HOM05D006002 ORTHO05D007651 3.9e-85 319.3 327 47.7
TPR.G32276 Trifolium pratense HOM05D006002 ORTHO05D007651 6.9e-82 308.5 373 48.8
Os12g0612500 Oryza sativa ssp. japonica HOM05D006002 ORTHO05D007651 1.3e-80 304.3 325 48.0
MD05G1214000 Malus domestica HOM05D006002 ORTHO05D007651 3.2e-79 299.7 251 58.6
Mapoly0051s0043 Marchantia polymorpha HOM05D006002 ORTHO05D007651 3.3e-76 289.7 446 36.5
AUR62041934 Chenopodium quinoa HOM05D006002 ORTHO05D007651 4.3e-76 289.3 323 50.5
Potri.018G000850 Populus trichocarpa HOM05D006002 ORTHO05D007651 1.1e-74 284.6 323 50.2
AagrBONN_evm.TU.Sc2ySwM_344.4971 Anthoceros agrestis HOM05D006002 ORTHO05D007651 1.4e-74 284.3 331 45.9
Pp3c1_22930 Physcomitrium patens HOM05D006002 ORTHO05D007651 2.0e-73 280.4 445 36.9
AUR62035491 Chenopodium quinoa HOM05D006002 ORTHO05D007651 2.9e-72 276.6 295 51.2
Cpa.g.sc42.79 Carica papaya HOM05D006002 ORTHO05D007651 2.4e-71 273.5 217 61.8
Oeu052016.1 Olea europaea HOM05D006002 ORTHO05D007651 4.2e-71 272.7 211 61.1
TPR.G18376 Trifolium pratense HOM05D006002 ORTHO05D007651 8.4e-64 248.4 157 76.4
CBR_g8978 Chara braunii HOM05D006002 ORTHO05D007651 4.2e-63 246.1 420 34.5
Actinidia35439 Actinidia chinensis HOM05D006002 ORTHO05D007651 9.3e-63 245.0 223 58.3
QL04p088694 Quercus lobata HOM05D006002 ORTHO05D007651 1.8e-50 204.1 173 59.5
MCO01G477 Micromonas commoda HOM05D006002 ORTHO05D007651 1.2e-49 201.4 382 34.3
Potri.001G003632 Populus trichocarpa HOM05D006002 ORTHO05D007651 5.9e-49 199.1 151 65.6
QL04p062372 Quercus lobata HOM05D006002 ORTHO05D007651 3.8e-48 196.4 125 74.4
PRCOL_00003514 Prasinoderma coloniale HOM05D006002 ORTHO05D007651 1.0e-45 188.3 410 33.2
Cpa.g.sc42.82 Carica papaya HOM05D006002 ORTHO05D007651 1.4e-45 188.0 124 67.7
Cre07.g337516 Chlamydomonas reinhardtii HOM05D006002 ORTHO05D007651 1.7e-43 181.0 427 29.5
Zm00001eb031660 Zea mays HOM05D006002 ORTHO05D007651 2.3e-37 160.6 127 55.1
MD05G1214300 Malus domestica HOM05D006002 ORTHO05D007651 2.0e-36 157.5 111 70.3
SEGI_15629 Sequoiadendron giganteum HOM05D006002 ORTHO05D007651 1.3e-32 144.8 122 51.6
COL.COLO4_30126 Corchorus olitorius HOM05D006002 ORTHO05D007651 2.6e-28 130.6 85 68.2
QL04p089617 Quercus lobata HOM05D002182 ORTHO05D004671 5.7e-28 129.4 146 52.7
BcaB04g17517 Brassica carinata HOM05D006002 ORTHO05D007651 1.6e-25 121.3 98 59.2
QL03p043192 Quercus lobata HOM05D006002 ORTHO05D007651 2.6e-20 104.0 61 77.0
QL04p089868 Quercus lobata HOM05D006002 ORTHO05D007651 3.3e-20 103.6 65 69.2
Cfa023409 Carpinus fangiana HOM05D006002 ORTHO05D126491 1.1e-10 72.0 232 28.0
CAN.G42.13 Capsicum annuum HOM05D006002 ORTHO05D007651 9.1e-10 68.9 55 61.8
CAN.G548.23 Capsicum annuum HOM05D006002 ORTHO05D007651 3.8e-08 63.5 132 33.3


User provided reference genes

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