Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.0PI3PU Arachis hypogaea HOM05D002419 ORTHO05D005441 8.9e-156 553.5 271 100.0
arahy.Tifrunner.gnm1.ann1.P2RDRN Arachis hypogaea HOM05D002419 ORTHO05D005441 2.1e-104 382.9 184 98.9
arahy.Tifrunner.gnm1.ann1.LS5S44 Arachis hypogaea HOM05D002419 ORTHO05D005441 1.4e-100 370.2 178 98.9
LjContig00564g0008442 Lotus japonicus HOM05D002419 ORTHO05D005441 3.8e-90 335.5 173 90.8
Glyma.02G076000 Glycine max HOM05D002419 ORTHO05D005441 7.2e-89 331.3 173 88.4
Medtr5g087910 Medicago truncatula HOM05D002419 ORTHO05D005441 2.1e-88 329.7 181 84.5
Glyma.16G158000 Glycine max HOM05D002419 ORTHO05D005441 2.7e-88 329.3 173 86.7
Phvul.004G086200 Phaseolus vulgaris HOM05D002419 ORTHO05D005441 4.7e-88 328.6 173 86.1
Lalb_Chr10g0105941 Lupinus albus HOM05D002419 ORTHO05D005441 3.9e-87 325.5 168 88.1
VMungo0245G0001 Vigna mungo HOM05D002419 ORTHO05D005441 5.1e-87 325.1 179 83.2
Ca_11594_v3 Cicer arietinum L. HOM05D002419 ORTHO05D005441 2.2e-85 319.7 181 81.2
TPR.G1260 Trifolium pratense HOM05D002419 ORTHO05D005441 3.7e-85 318.9 173 83.8
Lj1g0007529 Lotus japonicus HOM05D002419 ORTHO05D005441 5.3e-84 315.1 173 86.1
QL01p037218 Quercus lobata HOM05D002419 ORTHO05D005441 9.1e-84 314.3 173 85.5
VMungo1080G0265 Vigna mungo HOM05D002419 ORTHO05D005441 9.1e-84 314.3 173 82.1
Ca_01433_v3 Cicer arietinum L. HOM05D002419 ORTHO05D005441 1.5e-83 313.5 173 82.7
TPR.G11323 Trifolium pratense HOM05D002419 ORTHO05D005441 2.6e-83 312.8 173 82.1
Ciclev10029381m.g Citrus clementina HOM05D002419 ORTHO05D005441 5.9e-83 311.6 178 82.0
Thecc.01G220900 Theobroma cacao HOM05D002419 ORTHO05D005441 5.9e-83 311.6 178 80.3
Manes.04G024900 Manihot esculenta HOM05D002419 ORTHO05D005441 7.7e-83 311.2 178 79.2
Atru.chr3.3690 Acer truncatum HOM05D002419 ORTHO05D005441 2.2e-82 309.7 176 82.4
Eucgr.J00952 Eucalyptus grandis HOM05D002419 ORTHO05D005441 2.2e-82 309.7 171 81.3
Gorai.004G058900 Gossypium raimondii HOM05D002419 ORTHO05D005441 2.2e-82 309.7 178 81.5
Prupe.1G205700 Prunus persica HOM05D002419 ORTHO05D005441 2.2e-82 309.7 171 83.0
COL.COLO4_15624 Corchorus olitorius HOM05D002419 ORTHO05D005441 5.0e-82 308.5 178 80.3
Duzib138G1011 Durio zibethinus HOM05D002419 ORTHO05D005441 5.0e-82 308.5 173 82.7
Gohir.D08G057700 Gossypium hirsutum HOM05D002419 ORTHO05D005441 5.0e-82 308.5 178 80.9
Prupe.8G100300 Prunus persica HOM05D002419 ORTHO05D005441 5.0e-82 308.5 171 83.6
Duzib211G0640 Durio zibethinus HOM05D002419 ORTHO05D005441 8.5e-82 307.8 178 79.8
Gohir.A08G047300 Gossypium hirsutum HOM05D002419 ORTHO05D005441 1.1e-81 307.4 178 80.3
MD10G1078500 Malus domestica HOM05D002419 ORTHO05D005441 1.4e-81 307.0 170 83.5
Rhsim08G0250900 Rhododendron simsii HOM05D002419 ORTHO05D005441 1.4e-81 307.0 175 80.0
CiPaw.13G107100 Carya illinoinensis HOM05D002419 ORTHO05D005441 3.2e-81 305.8 171 84.2
PGR119G1746 Punica granatum HOM05D002419 ORTHO05D005441 3.2e-81 305.8 172 80.2
GSVIVG01025135001 Vitis vinifera HOM05D002419 ORTHO05D005441 3.2e-81 305.8 171 83.0
Duzib211G0283 Durio zibethinus HOM05D002419 ORTHO05D005441 4.2e-81 305.4 178 79.8
Cfa010014 Carpinus fangiana HOM05D002419 ORTHO05D005441 5.5e-81 305.1 171 83.6
Nitab4.5_0002129g0060 Nicotiana tabacum HOM05D002419 ORTHO05D005441 4.7e-80 302.0 178 77.5
Psat2g022600 Pisum sativum HOM05D002419 ORTHO05D005441 2.3e-79 299.7 164 84.8
Dinv32788 Davidia involucrata HOM05D002419 ORTHO05D005441 5.2e-79 298.5 175 78.3
CSS0025233 Camellia sinensis var. sinensis HOM05D002419 ORTHO05D005441 6.7e-79 298.1 175 78.9
CANSAT54G0974 Cannabis sativa HOM05D002419 ORTHO05D005441 1.1e-78 297.4 170 78.2
FvH4_5g29720 Fragaria vesca HOM05D002419 ORTHO05D005441 1.1e-78 297.4 170 79.4
FAN18G2638 Fragaria x ananassa HOM05D002419 ORTHO05D005441 1.1e-78 297.4 170 79.4
Cpa.g.sc8.318 Carica papaya HOM05D002419 ORTHO05D005441 2.6e-78 296.2 177 78.5
MSTRG.21143 Avicennia marina HOM05D002419 ORTHO05D005441 3.3e-78 295.8 174 77.6
Peaxi162Scf00389g00950 Petunia axillaris HOM05D002419 ORTHO05D005441 3.3e-78 295.8 171 78.4
Solyc11g072410.2 Solanum lycopersicum HOM05D002419 ORTHO05D005441 3.3e-78 295.8 175 75.4
Aqoxy5G03165 Aquilegia oxysepala HOM05D002419 ORTHO05D005441 4.4e-78 295.4 182 76.4
Potri.006G228500 Populus trichocarpa HOM05D002419 ORTHO05D005441 4.4e-78 295.4 170 77.6
Potri.012G109400 Populus trichocarpa HOM05D002419 ORTHO05D005441 4.4e-78 295.4 170 77.6
FAN13G2429 Fragaria x ananassa HOM05D002419 ORTHO05D005441 5.7e-78 295.0 171 78.9
TAR623G1637 Trochodendron aralioides HOM05D002419 ORTHO05D005441 7.4e-78 294.7 170 79.4
Sopen11g030060 Solanum pennellii HOM05D002419 ORTHO05D005441 9.7e-78 294.3 175 74.9
RcHm_v2.0_Chr7g0223211 Rosa chinensis HOM05D002419 ORTHO05D005441 1.3e-77 293.9 171 78.9
SalBow3G4510 Salvia bowleyana HOM05D002419 ORTHO05D005441 1.3e-77 293.9 167 79.0
PGSC0003DMG400027404 Solanum tuberosum HOM05D002419 ORTHO05D005441 1.3e-77 293.9 175 74.3
Hma1.2p1_0958F.1_g241480 Hydrangea macrophylla HOM05D002419 ORTHO05D005441 1.7e-77 293.5 174 77.6
PSO339G1519 Papaver somniferum HOM05D002419 ORTHO05D005441 1.7e-77 293.5 171 77.2
TWI31G0524 Tripterygium wilfordii HOM05D002419 ORTHO05D005441 2.8e-77 292.7 176 76.7
DCAR_006045 Daucus carota HOM05D002419 ORTHO05D005441 3.7e-77 292.4 168 77.4
Migut.D02183 Erythranthe guttata HOM05D002419 ORTHO05D005441 3.7e-77 292.4 167 79.0
FAN04G1346 Fragaria x ananassa HOM05D002419 ORTHO05D005441 8.2e-77 291.2 171 77.8
Sed0002828 Sechium edule HOM05D005177 ORTHO05D005441 1.1e-76 290.8 172 76.2
Actinidia03746 Actinidia chinensis HOM05D005177 ORTHO05D006175 1.4e-76 290.4 159 83.6
Aqoxy5G00056 Aquilegia oxysepala HOM05D002419 ORTHO05D005441 3.1e-76 289.3 171 78.4
CDE02G0876 Ceratophyllum demersum HOM05D002419 ORTHO05D005441 3.1e-76 289.3 169 74.6
ClCG02G020950 Citrullus lanatus HOM05D002419 ORTHO05D005441 4.1e-76 288.9 172 75.0
PSO541G3116 Papaver somniferum HOM05D002419 ORTHO05D005441 4.1e-76 288.9 171 76.6
PSO675G4527 Papaver somniferum HOM05D002419 ORTHO05D005441 4.1e-76 288.9 171 76.6
Rhsim01G0220200 Rhododendron simsii HOM05D002419 ORTHO05D005441 7.0e-76 288.1 208 67.8
Cc04_g16270 Coffea canephora HOM05D002419 ORTHO05D005441 1.2e-75 287.3 167 76.0
Haze_23372 Corylus avellana HOM05D002419 ORTHO05D005441 1.6e-75 287.0 182 75.8
MELO3C025747.2 Cucumis melo HOM05D002419 ORTHO05D005441 2.0e-75 286.6 172 74.4
ATR0564G250 Amborella trichopoda HOM05D002419 ORTHO05D005441 7.7e-75 284.6 176 72.7
FAN08G2817 Fragaria x ananassa HOM05D002419 ORTHO05D005441 7.7e-75 284.6 162 80.2
Lsat_1_v5_gn_6_26220 Lactuca sativa HOM05D002419 ORTHO05D005441 7.7e-75 284.6 171 74.9
CsaV3_6G021640 Cucumis sativus L. HOM05D002419 ORTHO05D005441 1.3e-74 283.9 172 73.8
Hund28200 Selenicereus undatus HOM05D002419 ORTHO05D005441 1.7e-74 283.5 166 78.9
Hund28212 Selenicereus undatus HOM05D002419 ORTHO05D005441 1.7e-74 283.5 166 78.9
HanXRQChr13g0401511 Helianthus annuus HOM05D002419 ORTHO05D005441 2.9e-74 282.7 171 76.6
Zm00001eb305840 Zea mays HOM05D002419 ORTHO05D005441 2.9e-74 282.7 170 74.7
Os07g0412400 Oryza sativa ssp. japonica HOM05D002419 ORTHO05D005441 3.8e-74 282.3 170 72.9
Ah.13g070120 Amaranthus hybridus HOM05D002419 ORTHO05D005441 6.5e-74 281.6 166 77.1
CDE06G2731 Ceratophyllum demersum HOM05D002419 ORTHO05D005441 6.5e-74 281.6 169 73.4
AUR62019559 Chenopodium quinoa HOM05D002419 ORTHO05D005441 6.5e-74 281.6 169 75.7
SGA_v2.0_scaffold61G21167 Striga asiatica HOM05D002419 ORTHO05D005441 8.5e-74 281.2 172 75.0
Sc06g0010580 Simmondsia chinensis HOM05D002419 ORTHO05D005441 1.1e-73 280.8 168 76.2
MBI18_g31602_MAGBIO Magnolia biondii HOM05D002419 ORTHO05D005441 1.5e-73 280.4 171 74.3
Oeu037230.1 Olea europaea HOM05D002419 ORTHO05D005441 5.5e-73 278.5 163 77.9
THA.LOC104814839 Tarenaya hassleriana HOM05D002419 ORTHO05D005441 1.2e-72 277.3 170 73.5
ECA233G1138 Erigeron canadensis HOM05D002419 ORTHO05D005441 2.1e-72 276.6 171 73.1
EL10Ac5g12738 Beta vulgaris HOM05D002419 ORTHO05D005441 2.7e-72 276.2 166 74.7
A03p11170 Brassica napus HOM05D002419 ORTHO05D005441 6.1e-72 275.0 169 74.0
vmacro14463 Vaccinium macrocarpon HOM05D002419 ORTHO05D005441 6.1e-72 275.0 236 59.3
BcaC02g12517 Brassica carinata HOM05D002419 ORTHO05D005441 1.0e-71 274.2 169 73.4
Sp6g21950 Schrenkiella parvula HOM05D002419 ORTHO05D005441 1.0e-71 274.2 169 72.8
BcaB08g36334 Brassica carinata HOM05D002419 ORTHO05D005441 1.4e-71 273.9 169 73.4
BraA03t10433Z Brassica rapa HOM05D002419 ORTHO05D005441 1.8e-71 273.5 169 73.4
SEGI_39229 Sequoiadendron giganteum HOM05D002419 ORTHO05D005441 1.8e-71 273.5 174 73.0
HPP92_005091 Vanilla planifolia HOM05D002419 ORTHO05D005441 5.2e-71 271.9 172 72.1
BcaC04g19694 Brassica carinata HOM05D002419 ORTHO05D005441 6.7e-71 271.6 170 72.4
THA.LOC104799485 Tarenaya hassleriana HOM05D002419 ORTHO05D005441 8.8e-71 271.2 165 76.4
BcaB01g04654 Brassica carinata HOM05D002419 ORTHO05D005441 1.5e-70 270.4 169 71.0
CAN.G1839.8 Capsicum annuum HOM05D002419 ORTHO05D005441 1.5e-70 270.4 175 68.6
C03p12900 Brassica napus HOM05D002419 ORTHO05D005441 2.0e-70 270.0 169 72.8
Carub.0003s2777 Capsella rubella HOM05D002419 ORTHO05D005441 2.6e-70 269.6 174 68.4
BolC3t13754H Brassica oleracea HOM05D002419 ORTHO05D005441 4.4e-70 268.9 170 72.4
Thhalv10014819m.g Eutrema salsugineum HOM05D002419 ORTHO05D005441 4.4e-70 268.9 169 71.6
BolC4t26562H Brassica oleracea HOM05D002419 ORTHO05D005441 9.7e-70 267.7 169 72.2
CARHR274010 Cardamine hirsuta HOM05D002419 ORTHO05D005441 8.2e-69 264.6 169 70.4
Peaxi162Scf00101g01011 Petunia axillaris HOM05D002419 ORTHO05D005441 1.1e-68 264.2 175 67.4
AL8G36960 Arabidopsis lyrata HOM05D002419 ORTHO05D005441 1.4e-68 263.8 169 68.6
Nitab4.5_0000106g0060 Nicotiana tabacum HOM05D002419 ORTHO05D005441 7.0e-68 261.5 175 67.4
BcaC08g46529 Brassica carinata HOM05D002419 ORTHO05D005441 1.6e-67 260.4 169 71.0
C09p52960 Brassica napus HOM05D002419 ORTHO05D005441 2.7e-67 259.6 176 69.9
Pp3c13_9300 Physcomitrium patens HOM05D002419 ORTHO05D005441 3.5e-67 259.2 169 69.2
A10p17550 Brassica napus HOM05D002419 ORTHO05D005441 4.5e-67 258.8 176 69.9
AUR62037871 Chenopodium quinoa HOM05D002419 ORTHO05D005441 4.5e-67 258.8 154 77.3
AagrBONN_evm.TU.Sc2ySwM_344.3388 Anthoceros agrestis HOM05D002419 ORTHO05D005441 1.0e-66 257.7 164 70.7
Oeu005909.2 Olea europaea HOM05D002419 ORTHO05D005441 1.3e-66 257.3 157 75.2
BolC9t58170H Brassica oleracea HOM05D002419 ORTHO05D005441 2.9e-66 256.1 159 74.2
BraA10t43836Z Brassica rapa HOM05D002419 ORTHO05D005441 1.9e-65 253.4 159 73.6
AT5G60340 Arabidopsis thaliana HOM05D002419 ORTHO05D005441 3.2e-65 252.7 169 66.9
TAR369G1020 Trochodendron aralioides HOM05D002419 ORTHO05D005441 4.2e-65 252.3 173 72.3
Mapoly0012s0053 Marchantia polymorpha HOM05D002419 ORTHO05D005441 4.7e-64 248.8 169 66.9
Sopen06g031710 Solanum pennellii HOM05D002419 ORTHO05D005441 1.4e-63 247.3 175 63.4
PGSC0003DMG400007496 Solanum tuberosum HOM05D002419 ORTHO05D005441 2.3e-63 246.5 181 63.0
Aa31LG1G12400 Aethionema arabicum HOM05D002419 ORTHO05D005441 7.5e-62 241.5 151 75.5
CBR_g24285 Chara braunii HOM05D002419 ORTHO05D005441 2.2e-61 240.0 166 66.9
Haze_23913 Corylus avellana HOM05D002419 ORTHO05D005441 3.1e-60 236.1 197 63.5
SMO367G1131 Selaginella moellendorffii HOM05D002419 ORTHO05D005441 5.9e-59 231.9 171 62.6
SHI24546 Sapria himalayana HOM05D002419 ORTHO05D005441 2.8e-56 223.0 168 59.5
Cre02.g081550 Chlamydomonas reinhardtii HOM05D002419 ORTHO05D005441 4.7e-56 222.2 165 60.6
Glyma.10G187200 Glycine max HOM05D002419 ORTHO05D005441 6.3e-53 211.8 122 81.1
PRCOL_00000283 Prasinoderma coloniale HOM05D002419 ORTHO05D005441 1.6e-51 207.2 166 56.0
Nn1g08940 Nelumbo nucifera HOM05D002419 ORTHO05D005441 2.1e-48 196.8 107 83.2
Nitab4.5_0001802g0070 Nicotiana tabacum HOM05D006502 ORTHO05D007704 9.8e-46 188.0 114 73.7
Aqoxy6G01924 Aquilegia oxysepala HOM05D002419 ORTHO05D005441 1.9e-44 183.7 109 78.0
Nn5g28456 Nelumbo nucifera HOM05D002419 ORTHO05D005441 3.2e-44 183.0 111 77.5
MCO01G137 Micromonas commoda HOM05D002419 ORTHO05D005441 3.9e-42 176.0 170 48.2
QL08p054546 Quercus lobata HOM05D002419 ORTHO05D005441 6.6e-42 175.3 173 56.6
Solyc06g075310.4 Solanum lycopersicum HOM05D002419 ORTHO05D005441 6.6e-42 175.3 115 68.7
unitig_736.g22419 Utricularia gibba HOM05D002419 ORTHO05D005441 6.6e-42 175.3 168 53.6
CAN.G553.11 Capsicum annuum HOM05D002419 ORTHO05D005441 1.5e-41 174.1 103 76.7
Dinv24670 Davidia involucrata HOM05D002419 ORTHO05D005441 2.5e-41 173.3 103 77.7
CAN.G6400.1 Capsicum annuum HOM05D002419 ORTHO05D005441 4.7e-40 169.1 102 75.5
arahy.Tifrunner.gnm1.ann1.9EY0GB Arachis hypogaea HOM05D002419 ORTHO05D005441 1.4e-39 167.5 149 63.8
AagrBONN_evm.TU.Sc2ySwM_228.4581 Anthoceros agrestis HOM05D002419 ORTHO05D005441 8.9e-39 164.9 104 72.1
CAN.G1001.14 Capsicum annuum HOM05D002419 ORTHO05D005441 9.8e-38 161.4 108 66.7
CAN.G1001.18 Capsicum annuum HOM05D002419 ORTHO05D005441 9.8e-38 161.4 108 66.7
arahy.Tifrunner.gnm1.ann1.VN8392 Arachis hypogaea HOM05D002419 ORTHO05D005441 1.7e-37 160.6 79 94.9
CAN.G352.38 Capsicum annuum HOM05D002419 ORTHO05D005441 3.3e-33 146.4 173 46.8
Aa31LG4G12680 Aethionema arabicum HOM05D002419 ORTHO05D005441 7.3e-33 145.2 85 78.8
Haze_26704 Corylus avellana HOM05D002419 ORTHO05D164840 2.0e-30 137.1 167 40.7
Peaxi162Scf00101g00114 Petunia axillaris HOM05D002419 ORTHO05D005441 4.3e-25 119.4 123 51.2
vmacro14073 Vaccinium macrocarpon HOM05D002419 ORTHO05D005441 1.2e-19 101.3 63 71.4
HPP92_005089 Vanilla planifolia HOM05D002419 ORTHO05D005441 1.2e-19 101.3 65 73.8
Cfa024491 Carpinus fangiana HOM05D002419 ORTHO05D126234 2.7e-19 100.1 181 31.5
PGSC0003DMG400008253 Solanum tuberosum HOM05D002419 ORTHO05D030681 3.6e-16 89.7 67 58.2
PGSC0003DMG400035128 Solanum tuberosum HOM05D002419 ORTHO05D030681 1.5e-14 84.3 67 55.2
SHI24547 Sapria himalayana HOM05D002419 ORTHO05D005441 7.6e-14 82.0 79 49.4
PGSC0003DMG400039134 Solanum tuberosum HOM05D002419 ORTHO05D030681 2.2e-13 80.5 68 57.4
Actinidia21172 Actinidia chinensis HOM05D002419 ORTHO05D055483 2.7e-11 73.6 35 88.6
arahy.Tifrunner.gnm1.ann1.7B7ZS8 Arachis hypogaea HOM05D033856 ORTHO05D086801 3.1e-07 60.1 54 61.1
vmacro14074 Vaccinium macrocarpon HOM05D002419 ORTHO05D005441 7.6e-06 55.5 48 58.3


User provided reference genes

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