Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.0NJ1V1 Arachis hypogaea HOM05D006326 ORTHO05D007589 0.0e+00 1172.1 664 100.0
arahy.Tifrunner.gnm1.ann1.Z1KKER Arachis hypogaea HOM05D006326 ORTHO05D007589 6.2e-219 764.6 475 97.3
Lj5g0016845 Lotus japonicus HOM05D006326 ORTHO05D007589 2.5e-127 460.3 475 59.2
Ca_05361_v3 Cicer arietinum L. HOM05D006326 ORTHO05D007589 8.4e-123 445.3 474 57.4
Lalb_Chr02g0156611 Lupinus albus HOM05D006326 ORTHO05D007589 3.6e-118 429.9 470 61.7
Glyma.02G166100 Glycine max HOM05D006326 ORTHO05D007589 1.9e-114 417.5 429 59.2
Phvul.007G233400 Phaseolus vulgaris HOM05D006326 ORTHO05D007589 6.2e-110 402.5 481 55.1
Psat6g129480 Pisum sativum HOM05D006326 ORTHO05D007589 8.4e-107 392.1 474 53.4
Glyma.10G102200 Glycine max HOM05D006326 ORTHO05D007589 8.1e-102 375.6 430 55.6
VMungo0720G1800 Vigna mungo HOM05D006326 ORTHO05D007589 7.6e-100 369.0 437 52.9
GSVIVG01033643001 Vitis vinifera HOM05D006326 ORTHO05D007589 9.6e-87 325.5 510 44.9
Medtr1g050510 Medicago truncatula HOM05D006326 ORTHO05D007589 3.7e-86 323.6 457 48.1
Dinv07946 Davidia involucrata HOM05D006326 ORTHO05D007589 1.1e-85 322.0 496 50.2
CiPaw.09G048500 Carya illinoinensis HOM05D006326 ORTHO05D007589 5.9e-84 316.2 487 45.6
QL07p011201 Quercus lobata HOM05D006326 ORTHO05D007589 1.0e-83 315.5 489 51.5
Atru.chr1.1394 Acer truncatum HOM05D006326 ORTHO05D007589 7.9e-81 305.8 505 44.4
Actinidia17957 Actinidia chinensis HOM05D006326 ORTHO05D007589 9.1e-77 292.4 498 46.0
Dinv05303 Davidia involucrata HOM05D006326 ORTHO05D007589 7.7e-76 289.3 500 44.4
MD14G1089900 Malus domestica HOM05D006326 ORTHO05D007589 1.1e-74 285.4 492 42.9
RcHm_v2.0_Chr6g0276151 Rosa chinensis HOM05D006326 ORTHO05D007589 1.9e-74 284.6 477 43.2
TAR623G0088 Trochodendron aralioides HOM05D006326 ORTHO05D007589 2.2e-70 271.2 525 42.1
Haze_20235 Corylus avellana HOM05D006326 ORTHO05D007589 2.6e-68 264.2 460 43.3
TPR.G7607 Trifolium pratense HOM05D006326 ORTHO05D007589 3.8e-67 260.4 474 48.3
CsaV3_4G029490 Cucumis sativus L. HOM05D006326 ORTHO05D007589 8.5e-67 259.2 476 42.0
Thecc.05G128800 Theobroma cacao HOM05D006326 ORTHO05D007589 1.1e-66 258.8 495 41.0
CSS0039389 Camellia sinensis var. sinensis HOM05D006326 ORTHO05D007589 2.7e-65 254.2 487 42.5
Potri.016G036000 Populus trichocarpa HOM05D006326 ORTHO05D007589 1.4e-64 251.9 481 42.6
Gohir.D09G115200 Gossypium hirsutum HOM05D006326 ORTHO05D007589 9.7e-63 245.7 504 43.8
FAN20G2839 Fragaria x ananassa HOM05D006326 ORTHO05D007589 6.3e-62 243.0 471 40.6
ClCG04G005630 Citrullus lanatus HOM05D006326 ORTHO05D007589 8.2e-62 242.7 512 39.1
FAN15G3215 Fragaria x ananassa HOM05D006326 ORTHO05D007589 3.5e-60 237.3 467 39.8
Prupe.7G034100 Prunus persica HOM05D006326 ORTHO05D007589 1.0e-59 235.7 479 38.0
Manes.09G004100 Manihot esculenta HOM05D006326 ORTHO05D007589 1.9e-58 231.5 441 39.2
Gorai.006G132800 Gossypium raimondii HOM05D006326 ORTHO05D007589 3.2e-58 230.7 508 42.5
Nitab4.5_0002982g0070 Nicotiana tabacum HOM05D006326 ORTHO05D007589 9.4e-58 229.2 489 47.9
FvH4_2g14070 Fragaria vesca HOM05D006326 ORTHO05D007589 2.1e-57 228.0 468 39.1
SalBow6G7225 Salvia bowleyana HOM05D006326 ORTHO05D007589 6.7e-56 223.0 470 39.6
Cpa.g.sc92.89 Carica papaya HOM05D006326 ORTHO05D007589 2.6e-55 221.1 503 42.3
Actinidia37880 Actinidia chinensis HOM05D006326 ORTHO05D007589 4.4e-55 220.3 472 39.8
Sabra06G0026900 Salix brachista HOM05D006326 ORTHO05D007589 7.5e-55 219.5 485 38.1
SabraUnG0002500 Salix brachista HOM05D006326 ORTHO05D007589 7.5e-55 219.5 485 38.1
Nitab4.5_0000237g0060 Nicotiana tabacum HOM05D006326 ORTHO05D007589 1.3e-54 218.8 483 46.4
Hma1.2p1_0252F.1_g102780 Hydrangea macrophylla HOM05D006326 ORTHO05D007589 4.8e-54 216.9 287 51.2
Potri.006G039900 Populus trichocarpa HOM05D006326 ORTHO05D007589 1.1e-53 215.7 479 38.4
Aqoxy1G00376 Aquilegia oxysepala HOM05D006326 ORTHO05D007589 2.7e-52 211.1 511 41.1
DCAR_013645 Daucus carota HOM05D002003 ORTHO05D002037 6.5e-51 206.5 488 40.2
Peaxi162Scf00076g00325 Petunia axillaris HOM05D006326 ORTHO05D007589 1.9e-50 204.9 518 37.8
CiPaw.10G040500 Carya illinoinensis HOM05D006326 ORTHO05D007589 5.5e-50 203.4 435 39.8
COL.COLO4_37458 Corchorus olitorius HOM05D006326 ORTHO05D007589 2.7e-49 201.1 499 35.9
Ciclev10011438m.g Citrus clementina HOM05D006326 ORTHO05D007589 3.6e-49 200.7 434 41.5
CAN.G51.3 Capsicum annuum HOM05D006326 ORTHO05D007589 1.8e-48 198.4 489 41.5
MSTRG.19798 Avicennia marina HOM05D006326 ORTHO05D007589 5.2e-48 196.8 495 39.0
Oeu057785.1 Olea europaea HOM05D006326 ORTHO05D007589 6.8e-48 196.4 490 36.9
Oeu057784.1 Olea europaea HOM05D006326 ORTHO05D007589 2.8e-46 191.0 485 36.7
Oeu022970.2 Olea europaea HOM05D006326 ORTHO05D007589 5.4e-45 186.8 505 36.2
HPP92_019182 Vanilla planifolia HOM05D006326 ORTHO05D007589 1.2e-44 185.7 502 35.9
unitig_60.g25479 Utricularia gibba HOM05D006326 ORTHO05D007589 3.8e-43 180.6 469 35.8
MELO3C019097.2 Cucumis melo HOM05D006326 ORTHO05D007589 3.2e-42 177.6 437 37.5
CANSAT64G1393 Cannabis sativa HOM05D006326 ORTHO05D007589 1.2e-41 175.6 451 35.5
SGA_v2.0_scaffold69G23160 Striga asiatica HOM05D006326 ORTHO05D007589 3.6e-41 174.1 472 36.4
Dinv01681 Davidia involucrata HOM05D006326 ORTHO05D007589 8.0e-41 172.9 384 43.5
ATR0317G072 Amborella trichopoda HOM05D006326 ORTHO05D007589 1.0e-40 172.6 536 35.6
FAN24G3485 Fragaria x ananassa HOM05D006326 ORTHO05D007589 1.0e-40 172.6 419 35.1
Gohir.A09G118300 Gossypium hirsutum HOM05D006326 ORTHO05D007589 4.0e-40 170.6 464 38.1
TWI74G0746 Tripterygium wilfordii HOM05D006326 ORTHO05D007589 8.8e-40 169.5 431 38.3
CARHR166860 Cardamine hirsuta HOM05D006326 ORTHO05D007589 2.6e-39 167.9 480 36.5
Sp5g05840 Schrenkiella parvula HOM05D006326 ORTHO05D007589 4.4e-39 167.2 482 33.8
Duzib128G1973 Durio zibethinus HOM05D006326 ORTHO05D007589 2.8e-38 164.5 316 39.6
vmacro07781 Vaccinium macrocarpon HOM05D006326 ORTHO05D007589 1.8e-37 161.8 481 34.5
Eucgr.B03116 Eucalyptus grandis HOM05D006326 ORTHO05D007589 2.4e-37 161.4 442 33.3
Aa31LG10G11560 Aethionema arabicum HOM05D006326 ORTHO05D007589 1.3e-35 155.6 495 33.9
Lsat_1_v5_gn_9_29721 Lactuca sativa HOM05D006326 ORTHO05D007589 5.0e-35 153.7 476 34.2
AL5G38090 Arabidopsis lyrata HOM05D006326 ORTHO05D007589 9.5e-34 149.4 481 39.1
Solyc12g020000.3 Solanum lycopersicum HOM05D006326 ORTHO05D007589 2.8e-33 147.9 305 42.3
Rhsim03G0036800 Rhododendron simsii HOM05D006326 ORTHO05D007589 1.8e-32 145.2 625 30.4
Sed0018260 Sechium edule HOM05D006326 ORTHO05D007589 3.0e-32 144.4 303 40.6
Carub.0005s2347 Capsella rubella HOM05D006326 ORTHO05D007589 5.2e-32 143.7 474 35.2
SGA_v2.0_scaffold1000G53781 Striga asiatica HOM05D006326 ORTHO05D007589 6.8e-32 143.3 309 38.8
ECA247G0820 Erigeron canadensis HOM05D006326 ORTHO05D007589 2.6e-31 141.4 350 38.0
BcaC07g40122 Brassica carinata HOM05D006326 ORTHO05D007589 3.4e-31 141.0 472 35.0
unitig_0.g603 Utricularia gibba HOM05D006326 ORTHO05D007589 1.7e-30 138.7 122 64.8
BolC8t50813H Brassica oleracea HOM05D006326 ORTHO05D007589 2.9e-30 137.9 338 38.5
C08p31960 Brassica napus HOM05D004518 ORTHO05D005434 8.3e-30 136.3 461 33.6
Sopen12g010520 Solanum pennellii HOM05D006326 ORTHO05D007589 1.1e-29 136.0 444 33.8
TWI53G1954 Tripterygium wilfordii HOM05D006326 ORTHO05D007589 1.1e-29 136.0 443 32.7
CDE04G2458 Ceratophyllum demersum HOM05D006326 ORTHO05D007589 1.4e-29 135.6 165 52.7
HanXRQChr15g0491141 Helianthus annuus HOM05D006326 ORTHO05D007589 1.4e-29 135.6 216 46.8
SGA_v2.0_scaffold66G22355 Striga asiatica HOM05D006326 ORTHO05D007589 1.4e-29 135.6 133 56.4
BcaC07g39981 Brassica carinata HOM05D006326 ORTHO05D007589 5.9e-28 130.2 336 36.3
Ah.13g076820 Amaranthus hybridus HOM05D002003 ORTHO05D002037 7.8e-28 129.8 550 30.4
AUR62030307 Chenopodium quinoa HOM05D006326 ORTHO05D007589 1.3e-27 129.0 477 31.7
AUR62018355 Chenopodium quinoa HOM05D006326 ORTHO05D007589 5.0e-27 127.1 477 31.9
Medtr0722s0010 Medicago truncatula HOM05D006326 ORTHO05D007589 8.6e-27 126.3 74 89.2
Hund19089 Selenicereus undatus HOM05D006326 ORTHO05D007589 2.5e-26 124.8 508 32.7
PSO384G3095 Papaver somniferum HOM05D006326 ORTHO05D007589 7.3e-26 123.2 447 32.2
Migut.J01646 Erythranthe guttata HOM05D006326 ORTHO05D007589 1.2e-25 122.5 425 33.2
Sc13g0001090 Simmondsia chinensis HOM05D006326 ORTHO05D007589 2.8e-25 121.3 436 29.8
EL10Ac3g07247 Beta vulgaris HOM05D006326 ORTHO05D007589 1.1e-24 119.4 485 31.3
Nn7g36809 Nelumbo nucifera HOM05D006326 ORTHO05D007589 4.0e-24 117.5 447 33.1
PSO339G2802 Papaver somniferum HOM05D006326 ORTHO05D007589 5.2e-24 117.1 451 32.6
Mapoly0069s0088 Marchantia polymorpha HOM05D006326 ORTHO05D007589 3.4e-23 114.4 214 40.7
Cc06_g19610 Coffea canephora HOM05D006326 ORTHO05D007589 7.5e-23 113.2 448 31.2
Pp3c14_4840 Physcomitrium patens HOM05D006326 ORTHO05D007589 4.9e-22 110.5 130 50.0
AagrBONN_evm.TU.Sc2ySwM_344.979 Anthoceros agrestis HOM05D006326 ORTHO05D007589 7.0e-21 106.7 350 33.4
THA.LOC104815890 Tarenaya hassleriana HOM05D006326 ORTHO05D007589 7.0e-21 106.7 437 35.7
Actinidia01833 Actinidia chinensis HOM05D006326 ORTHO05D007589 9.2e-21 106.3 85 69.4
CSS0038712 Camellia sinensis var. sinensis HOM05D006326 ORTHO05D007589 1.2e-20 105.9 359 32.9
Hma1.2p1_0975F.1_g243130 Hydrangea macrophylla HOM05D006326 ORTHO05D007589 2.0e-20 105.1 331 35.3
Hma1.2p1_0975F.1_g243140 Hydrangea macrophylla HOM05D006326 ORTHO05D007589 2.7e-20 104.8 324 35.2
Thhalv10005957m.g Eutrema salsugineum HOM05D006326 ORTHO05D007589 8.1e-17 93.2 465 29.0
SEGI_11590 Sequoiadendron giganteum HOM05D006326 ORTHO05D007589 1.8e-16 92.0 593 29.7
A09p49570 Brassica napus HOM05D006326 ORTHO05D007589 4.9e-14 84.0 415 28.7
BraA09t40410Z Brassica rapa HOM05D006326 ORTHO05D007589 4.9e-14 84.0 415 28.7
Pp3c1_21670 Physcomitrium patens HOM05D006326 ORTHO05D007589 1.1e-13 82.8 110 44.5
SMO351G0508 Selaginella moellendorffii HOM05D006326 ORTHO05D007589 4.1e-13 80.9 151 40.4
PGR142G2735 Punica granatum HOM05D006326 ORTHO05D007589 1.3e-11 75.9 437 29.5
VMungo0720G0679 Vigna mungo HOM05D006326 ORTHO05D007589 5.1e-11 73.9 48 81.2
Zm00001eb185630 Zea mays HOM05D006326 ORTHO05D007589 2.6e-07 61.6 316 32.0
SGA_v2.0_scaffold66G22262 Striga asiatica HOM05D006326 ORTHO05D007589 3.4e-07 61.2 497 27.6


User provided reference genes

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