Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.0NAL6S Arachis hypogaea HOM05D003822 ORTHO05D004484 1.8e-125 453.0 300 100.0
arahy.Tifrunner.gnm1.ann1.1KAH27 Arachis hypogaea HOM05D003822 ORTHO05D004484 2.6e-124 449.1 300 99.3
VMungo1080G0920 Vigna mungo HOM05D003822 ORTHO05D004484 1.3e-91 340.5 307 72.3
Glyma.15G027800 Glycine max HOM05D003822 ORTHO05D004484 1.7e-91 340.1 309 73.5
QL10p052081 Quercus lobata HOM05D003822 ORTHO05D004484 1.9e-90 336.7 312 72.1
Lalb_Chr24g0396641 Lupinus albus HOM05D003822 ORTHO05D004484 4.7e-89 332.0 315 72.4
Glyma.13G346400 Glycine max HOM05D003822 ORTHO05D004484 3.0e-88 329.3 313 70.9
Prupe.1G200400 Prunus persica HOM05D003822 ORTHO05D004484 7.4e-87 324.7 305 73.1
COL.COLO4_29926 Corchorus olitorius HOM05D003822 ORTHO05D004484 1.1e-85 320.9 309 68.9
Hma1.2p1_0635F.1_g193140 Hydrangea macrophylla HOM05D003822 ORTHO05D004484 2.4e-85 319.7 310 71.0
Ca_01239_v3 Cicer arietinum L. HOM05D003822 ORTHO05D004484 3.1e-85 319.3 305 71.5
Hma1.2p1_2403F.1_g321420 Hydrangea macrophylla HOM05D003822 ORTHO05D004484 4.1e-85 318.9 308 72.1
TPR.G6564 Trifolium pratense HOM05D003822 ORTHO05D004484 5.3e-85 318.5 306 67.3
Potri.017G018400 Populus trichocarpa HOM05D003822 ORTHO05D004484 1.6e-84 317.0 314 71.3
Peaxi162Scf00995g00322 Petunia axillaris HOM05D003822 ORTHO05D004484 4.5e-84 315.5 300 69.0
VMungo1127G1572 Vigna mungo HOM05D003822 ORTHO05D004484 3.8e-83 312.4 298 66.4
Eucgr.A00039 Eucalyptus grandis HOM05D003822 ORTHO05D004484 5.0e-83 312.0 302 67.5
Cfa015215 Carpinus fangiana HOM05D003822 ORTHO05D004484 6.5e-83 311.6 310 73.2
Ciclev10021425m.g Citrus clementina HOM05D003822 ORTHO05D004484 1.5e-82 310.5 313 70.9
Haze_01421 Corylus avellana HOM05D003822 ORTHO05D004484 1.5e-82 310.5 310 70.6
FAN08G2486 Fragaria x ananassa HOM05D003822 ORTHO05D004484 1.5e-82 310.5 306 67.0
Lalb_Chr22g0352031 Lupinus albus HOM05D003822 ORTHO05D004484 7.2e-82 308.1 301 67.4
Manes.13G057600 Manihot esculenta HOM05D003822 ORTHO05D004484 1.2e-81 307.4 296 72.3
Duzib211G0255 Durio zibethinus HOM05D003822 ORTHO05D004484 3.6e-81 305.8 302 72.5
Glyma.11G125400 Glycine max HOM05D003822 ORTHO05D004484 3.6e-81 305.8 298 66.8
Gorai.007G162100 Gossypium raimondii HOM05D003822 ORTHO05D004484 8.0e-81 304.7 315 63.5
Gohir.A11G145000 Gossypium hirsutum HOM05D003822 ORTHO05D004484 1.0e-80 304.3 315 63.5
Medtr2g099360 Medicago truncatula HOM05D003822 ORTHO05D004484 1.0e-80 304.3 319 69.6
FAN18G3379 Fragaria x ananassa HOM05D003822 ORTHO05D004484 1.4e-80 303.9 321 66.0
Solyc06g007700.4 Solanum lycopersicum HOM05D003822 ORTHO05D004484 1.8e-80 303.5 294 72.8
Gohir.D11G153200 Gossypium hirsutum HOM05D003822 ORTHO05D004484 2.3e-80 303.1 315 63.2
CiPaw.02G103400 Carya illinoinensis HOM05D003822 ORTHO05D004484 4.0e-80 302.4 318 67.9
Phvul.005G155400 Phaseolus vulgaris HOM05D003822 ORTHO05D004484 4.0e-80 302.4 314 67.5
Thecc.01G205200 Theobroma cacao HOM05D003822 ORTHO05D004484 1.1e-79 300.8 302 71.5
Sabra17G0014400 Salix brachista HOM05D000455 ORTHO05D000434 1.5e-79 300.4 298 72.5
TWI18G0659 Tripterygium wilfordii HOM05D003822 ORTHO05D004484 3.3e-79 299.3 292 69.5
RcHm_v2.0_Chr7g0230961 Rosa chinensis HOM05D003822 ORTHO05D004484 9.7e-79 297.7 312 66.3
TAR633G2284 Trochodendron aralioides HOM05D003822 ORTHO05D004484 9.7e-79 297.7 304 65.8
CiPaw.01G173700 Carya illinoinensis HOM05D003822 ORTHO05D004484 1.3e-78 297.4 304 73.4
Eucgr.H00681 Eucalyptus grandis HOM05D003822 ORTHO05D004484 1.3e-78 297.4 324 67.0
FvH4_5g32960 Fragaria vesca HOM05D003822 ORTHO05D004484 4.8e-78 295.4 314 69.4
Lj3g0026330 Lotus japonicus HOM05D003822 ORTHO05D004484 6.3e-78 295.0 312 73.1
RcHm_v2.0_Chr1g0340971 Rosa chinensis HOM05D003822 ORTHO05D004484 6.3e-78 295.0 302 63.9
Sc19g0002790 Simmondsia chinensis HOM05D003822 ORTHO05D004484 6.3e-78 295.0 296 66.9
Nitab4.5_0002641g0020 Nicotiana tabacum HOM05D003822 ORTHO05D004484 8.2e-78 294.7 301 71.1
TWI36G1391 Tripterygium wilfordii HOM05D003822 ORTHO05D004484 8.2e-78 294.7 292 65.8
TWI36G1709 Tripterygium wilfordii HOM05D003822 ORTHO05D004484 8.2e-78 294.7 292 65.8
MELO3C017788.2 Cucumis melo HOM05D003822 ORTHO05D004484 1.8e-77 293.5 310 65.5
FAN04G1289 Fragaria x ananassa HOM05D003822 ORTHO05D004484 1.8e-77 293.5 313 65.8
MSTRG.17947 Avicennia marina HOM05D003822 ORTHO05D004484 4.1e-77 292.4 306 63.7
TAR362G1102 Trochodendron aralioides HOM05D003822 ORTHO05D004484 4.1e-77 292.4 304 67.1
Cc02_g30690 Coffea canephora HOM05D003822 ORTHO05D004484 9.1e-77 291.2 298 68.5
Sabra07G0108500 Salix brachista HOM05D003822 ORTHO05D004484 9.1e-77 291.2 300 65.3
Sabra07G0120800 Salix brachista HOM05D003822 ORTHO05D004484 9.1e-77 291.2 300 65.3
Nn7g37555 Nelumbo nucifera HOM05D003822 ORTHO05D004484 2.7e-76 289.7 302 65.2
MD04G1046700 Malus domestica HOM05D003822 ORTHO05D004484 4.5e-76 288.9 307 67.1
Sopen06g002590 Solanum pennellii HOM05D003822 ORTHO05D004484 2.9e-75 286.2 300 70.7
ECA236G4570 Erigeron canadensis HOM05D003822 ORTHO05D004484 6.5e-75 285.0 301 64.1
Nitab4.5_0003952g0050 Nicotiana tabacum HOM05D003822 ORTHO05D004484 8.5e-75 284.6 305 65.2
AUR62002363 Chenopodium quinoa HOM05D003822 ORTHO05D004484 1.1e-74 284.3 304 66.8
Nn1g09539 Nelumbo nucifera HOM05D003822 ORTHO05D004484 1.9e-74 283.5 302 66.6
SGA_v2.0_scaffold77G25327 Striga asiatica HOM05D003822 ORTHO05D004484 1.9e-74 283.5 297 62.3
Sed0021377 Sechium edule HOM05D003822 ORTHO05D004484 4.2e-74 282.3 308 67.5
Ciclev10016105m.g Citrus clementina HOM05D003822 ORTHO05D004484 5.5e-74 282.0 313 64.9
Lj3g0024368 Lotus japonicus HOM05D003822 ORTHO05D004484 5.5e-74 282.0 304 64.1
CsaV3_4G002560 Cucumis sativus L. HOM05D003822 ORTHO05D004484 1.6e-73 280.4 304 71.7
Duzib133G0954 Durio zibethinus HOM05D003822 ORTHO05D004484 2.7e-73 279.6 303 66.7
vmacro14674 Vaccinium macrocarpon HOM05D003822 ORTHO05D004484 4.7e-73 278.9 299 63.9
Oeu013421.2 Olea europaea HOM05D003822 ORTHO05D004484 1.8e-72 276.9 315 64.8
Sabra17G0002300 Salix brachista HOM05D000455 ORTHO05D000434 1.8e-72 276.9 345 62.0
Atru.chr6.3488 Acer truncatum HOM05D003822 ORTHO05D004484 6.8e-72 275.0 312 66.7
Lsat_1_v5_gn_8_98601 Lactuca sativa HOM05D003822 ORTHO05D004484 8.8e-72 274.6 306 66.3
Sed0005976 Sechium edule HOM05D003822 ORTHO05D004484 8.8e-72 274.6 307 66.4
Cpa.g.sc8.23 Carica papaya HOM05D003822 ORTHO05D004484 1.2e-71 274.2 316 62.7
Manes.12G057507 Manihot esculenta HOM05D003822 ORTHO05D004484 2.6e-71 273.1 294 72.1
Manes.12G057905 Manihot esculenta HOM05D003822 ORTHO05D004484 2.6e-71 273.1 294 72.1
Ah.07g202460 Amaranthus hybridus HOM05D003822 ORTHO05D004484 3.4e-71 272.7 301 61.5
THA.LOC104819024 Tarenaya hassleriana HOM05D003822 ORTHO05D004484 3.4e-71 272.7 306 66.7
Duzib138G1354 Durio zibethinus HOM05D003822 ORTHO05D004484 7.5e-71 271.6 312 65.7
PGR102G0947 Punica granatum HOM05D003822 ORTHO05D004484 9.8e-71 271.2 311 61.4
Peaxi162Scf00372g00722 Petunia axillaris HOM05D003822 ORTHO05D004484 1.7e-70 270.4 301 67.8
EL10Ac3g06027 Beta vulgaris HOM05D003822 ORTHO05D004484 2.8e-70 269.6 297 67.7
Actinidia23132 Actinidia chinensis HOM05D003822 ORTHO05D004484 4.8e-70 268.9 301 56.1
TAR365G1107 Trochodendron aralioides HOM05D003822 ORTHO05D004484 4.8e-70 268.9 281 70.8
CANSAT11G1915 Cannabis sativa HOM05D003822 ORTHO05D004484 8.3e-70 268.1 318 71.4
PGSC0003DMG400020658 Solanum tuberosum HOM05D003822 ORTHO05D004484 1.1e-69 267.7 304 64.5
THA.LOC104822456 Tarenaya hassleriana HOM05D003822 ORTHO05D004484 1.8e-69 266.9 303 62.7
Sabra14G0133100 Salix brachista HOM05D003822 ORTHO05D004484 2.4e-69 266.5 301 62.8
Manes.12G058903 Manihot esculenta HOM05D003822 ORTHO05D004484 5.4e-69 265.4 303 69.3
unitig_22.g5196 Utricularia gibba HOM05D003822 ORTHO05D004484 5.4e-69 265.4 306 58.8
HanXRQChr10g0281191 Helianthus annuus HOM05D003822 ORTHO05D004484 1.2e-68 264.2 315 53.0
AL3G18900 Arabidopsis lyrata HOM05D003822 ORTHO05D004484 2.0e-68 263.5 303 63.0
PSO017G3256 Papaver somniferum HOM05D003822 ORTHO05D004484 4.5e-68 262.3 312 64.1
Potri.014G197200 Populus trichocarpa HOM05D003822 ORTHO05D004484 5.9e-68 261.9 312 69.2
Aqoxy2G04159 Aquilegia oxysepala HOM05D003822 ORTHO05D004484 1.3e-67 260.8 328 56.4
PSO837G0022 Papaver somniferum HOM05D003822 ORTHO05D004484 1.3e-67 260.8 312 63.8
Hund03185 Selenicereus undatus HOM05D003822 ORTHO05D004484 1.7e-67 260.4 305 59.3
Actinidia34522 Actinidia chinensis HOM05D003822 ORTHO05D004484 3.8e-67 259.2 302 62.6
CANSAT56G4141 Cannabis sativa HOM05D003822 ORTHO05D004484 3.8e-67 259.2 324 66.7
HanXRQChr01g0010521 Helianthus annuus HOM05D003822 ORTHO05D004484 3.8e-67 259.2 300 61.7
Dinv28779 Davidia involucrata HOM05D003822 ORTHO05D004484 1.1e-66 257.7 297 63.3
BraA05t22796Z Brassica rapa HOM05D003822 ORTHO05D004484 1.5e-66 257.3 299 63.9
ECA248G1190 Erigeron canadensis HOM05D002050 ORTHO05D001949 3.2e-66 256.1 281 54.1
Carub.0003s0711 Capsella rubella HOM05D003822 ORTHO05D004484 5.5e-66 255.4 302 66.6
HPP92_015668 Vanilla planifolia HOM05D003822 ORTHO05D004484 5.5e-66 255.4 292 66.1
A05p40650 Brassica napus HOM05D003822 ORTHO05D004484 9.4e-66 254.6 294 63.6
AT3G07560 Arabidopsis thaliana HOM05D003822 ORTHO05D004484 1.2e-65 254.2 303 61.7
Thhalv10021215m.g Eutrema salsugineum HOM05D003822 ORTHO05D004484 1.2e-65 254.2 302 61.6
MD00G1127600 Malus domestica HOM05D003822 ORTHO05D004484 1.6e-65 253.8 298 63.4
BcaB03g14694 Brassica carinata HOM05D003822 ORTHO05D004484 2.1e-65 253.4 308 63.6
Aa31LG5G18100 Aethionema arabicum HOM05D003822 ORTHO05D004484 8.0e-65 251.5 304 62.5
CAN.G181.49 Capsicum annuum HOM05D003822 ORTHO05D004484 2.3e-64 250.0 305 64.9
Sp3g06480 Schrenkiella parvula HOM05D003822 ORTHO05D004484 3.0e-64 249.6 303 64.4
C03p42940 Brassica napus HOM05D003822 ORTHO05D004484 5.2e-64 248.8 319 58.3
CSS0026869 Camellia sinensis var. sinensis HOM05D003822 ORTHO05D004484 1.3e-62 244.2 295 65.4
BcaC01g04277 Brassica carinata HOM05D003822 ORTHO05D004484 1.7e-62 243.8 314 58.3
A03p35330 Brassica napus HOM05D003822 ORTHO05D004484 1.8e-61 240.4 320 59.1
PGR083G0513 Punica granatum HOM05D003822 ORTHO05D004484 7.0e-61 238.4 298 65.4
ClCG07G011660 Citrullus lanatus HOM05D003822 ORTHO05D004484 9.2e-61 238.0 409 48.2
MBI02_g24302_MAGBIO Magnolia biondii HOM05D003822 ORTHO05D004484 1.6e-60 237.3 309 58.9
BolC3t16562H Brassica oleracea HOM05D003822 ORTHO05D004484 7.7e-60 235.0 306 63.7
BolC5t34630H Brassica oleracea HOM05D003822 ORTHO05D004484 1.0e-59 234.6 323 56.3
CDE02G4798 Ceratophyllum demersum HOM05D003822 ORTHO05D004484 1.9e-58 230.3 292 62.0
Migut.N00690 Erythranthe guttata HOM05D003822 ORTHO05D004484 2.5e-58 229.9 311 63.3
AUR62023822 Chenopodium quinoa HOM05D003822 ORTHO05D004484 5.6e-58 228.8 302 57.3
Os07g0152800 Oryza sativa ssp. japonica HOM05D003822 ORTHO05D004484 7.3e-58 228.4 292 61.3
CDE05G3137 Ceratophyllum demersum HOM05D003822 ORTHO05D004484 2.8e-57 226.5 297 55.6
C05p59760 Brassica napus HOM05D003822 ORTHO05D004484 6.1e-57 225.3 302 56.3
BcaB04g21287 Brassica carinata HOM05D003822 ORTHO05D004484 8.0e-57 224.9 299 56.2
Zm00001eb117520 Zea mays HOM05D003822 ORTHO05D004484 1.2e-55 221.1 291 59.5
ATR0752G090 Amborella trichopoda HOM05D003822 ORTHO05D004484 2.0e-55 220.3 289 60.2
Manes.11G127100 Manihot esculenta HOM05D003822 ORTHO05D004484 4.4e-55 219.2 268 59.3
Lsat_1_v5_gn_5_175601 Lactuca sativa HOM05D003822 ORTHO05D004484 5.7e-55 218.8 297 57.6
Os03g0786000 Oryza sativa ssp. japonica HOM05D003822 ORTHO05D004484 1.7e-54 217.2 293 56.7
BcaC05g29550 Brassica carinata HOM05D003822 ORTHO05D004484 2.2e-54 216.9 290 56.6
Phvul.011G052000 Phaseolus vulgaris HOM05D003822 ORTHO05D004484 3.2e-53 213.0 133 75.2
Zm00001eb059960 Zea mays HOM05D003822 ORTHO05D004484 4.6e-52 209.1 292 54.5
Oeu020438.1 Olea europaea HOM05D003822 ORTHO05D004484 5.9e-52 208.8 129 78.3
PGSC0003DMG400020552 Solanum tuberosum HOM05D003822 ORTHO05D004484 6.2e-49 198.7 132 71.2
SEGI_01562 Sequoiadendron giganteum HOM05D003822 ORTHO05D004484 2.3e-48 196.8 301 50.8
SGA_v2.0_scaffold95G28678 Striga asiatica HOM05D003822 ORTHO05D004484 2.6e-47 193.4 230 58.7
Psat5g291600 Pisum sativum HOM05D003822 ORTHO05D004484 4.4e-47 192.6 234 78.2
CSS0006211 Camellia sinensis var. sinensis HOM05D003822 ORTHO05D004484 5.8e-47 192.2 214 64.0
Actinidia11655 Actinidia chinensis HOM05D003822 ORTHO05D004484 8.3e-46 188.3 131 73.3
Lj2C1109G11 Lonicera japonica HOM05D003822 ORTHO05D004484 5.4e-45 185.7 300 54.0
SEGI_07594 Sequoiadendron giganteum HOM05D003822 ORTHO05D004484 2.0e-44 183.7 313 43.1
Gorai.N001500 Gossypium raimondii HOM05D003822 ORTHO05D004484 2.1e-41 173.7 298 51.3
BolC1t05546H Brassica oleracea HOM05D003822 ORTHO05D004484 3.6e-41 172.9 250 59.6
BraA01t04376Z Brassica rapa HOM05D003822 ORTHO05D004484 3.6e-41 172.9 132 64.4
MBI18_g24478_MAGBIO Magnolia biondii HOM05D003822 ORTHO05D004484 8.1e-41 171.8 288 47.2
Manes.12G058104 Manihot esculenta HOM05D003822 ORTHO05D004484 3.4e-39 166.4 104 82.7
MSTRG.12731 Avicennia marina HOM05D003822 ORTHO05D004484 9.9e-31 138.3 100 68.0
Mapoly0080s0067 Marchantia polymorpha HOM05D003822 ORTHO05D004484 1.4e-29 134.4 331 49.8
AagrBONN_evm.TU.Sc2ySwM_368.3329 Anthoceros agrestis HOM05D003822 ORTHO05D004484 1.2e-28 131.3 320 44.7
SMO146G0020 Selaginella moellendorffii HOM05D003822 ORTHO05D004484 6.0e-28 129.0 312 45.5
MSTRG.12733 Avicennia marina HOM05D003822 ORTHO05D004484 3.9e-27 126.3 208 48.1
FAN01G1095 Fragaria x ananassa HOM05D003822 ORTHO05D004484 3.9e-27 126.3 276 46.7
CBR_g38951 Chara braunii HOM05D003822 ORTHO05D004484 2.5e-26 123.6 334 49.4
Pp3c11_19790 Physcomitrium patens HOM05D003822 ORTHO05D004484 3.3e-26 123.2 309 46.6
unitig_8.g3681 Utricularia gibba HOM05D003822 ORTHO05D004484 1.8e-24 117.5 122 58.2
CSS0030404 Camellia sinensis var. sinensis HOM05D003822 ORTHO05D004484 6.4e-22 109.0 88 68.2
FAN06G0586 Fragaria x ananassa HOM05D003822 ORTHO05D004484 1.9e-21 107.5 97 63.9
CARHR082240 Cardamine hirsuta HOM05D003822 ORTHO05D004484 9.3e-21 105.1 206 59.2
Oeu020439.1 Olea europaea HOM05D003822 ORTHO05D004484 1.6e-20 104.4 83 67.5
Thecc.04G171800 Theobroma cacao HOM05D003822 ORTHO05D004484 1.3e-19 101.3 63 73.0
Hma1.2p1_0161F.1_g071790 Hydrangea macrophylla HOM05D003822 ORTHO05D004484 1.9e-18 97.4 138 42.0
FvH4_7g08180 Fragaria vesca HOM05D003822 ORTHO05D046505 3.3e-18 96.7 88 63.6
CARHR082220 Cardamine hirsuta HOM05D003822 ORTHO05D004484 5.6e-18 95.9 73 68.5
FAN10G3558 Fragaria x ananassa HOM05D003822 ORTHO05D046505 7.3e-18 95.5 314 32.8
Atru.chr4.1339 Acer truncatum HOM05D003822 ORTHO05D004484 9.6e-18 95.1 90 58.9
Cre13.g574700 Chlamydomonas reinhardtii HOM05D003822 ORTHO05D004484 2.9e-14 83.6 64 59.4
Eucgr.C02476 Eucalyptus grandis HOM05D003822 ORTHO05D004484 4.2e-13 79.7 63 61.9
Gohir.A07G157900 Gossypium hirsutum HOM05D003822 ORTHO05D004484 7.1e-13 79.0 92 51.1
MCO15G241 Micromonas commoda HOM05D003822 ORTHO05D004484 9.3e-13 78.6 291 45.4
Eucgr.B03613 Eucalyptus grandis HOM05D003822 ORTHO05D004484 1.2e-12 78.2 79 55.7
FAN01G2016 Fragaria x ananassa HOM05D003822 ORTHO05D004484 4.6e-12 76.3 45 84.4
CBR_g50337 Chara braunii HOM05D003822 ORTHO05D004484 1.8e-11 74.3 273 48.7
SEGI_40649 Sequoiadendron giganteum HOM05D003822 ORTHO05D004484 2.5e-10 70.5 92 52.2
ATR0737G020 Amborella trichopoda HOM05D003822 ORTHO05D004484 1.3e-09 68.2 76 53.9
SEGI_02285 Sequoiadendron giganteum HOM05D003822 ORTHO05D004484 2.1e-09 67.4 114 50.9
FAN06G2565 Fragaria x ananassa HOM05D003822 ORTHO05D001690 8.1e-09 65.5 90 50.0
Duzib170G0932 Durio zibethinus HOM05D003822 ORTHO05D004484 6.4e-06 55.8 31 83.9


User provided reference genes

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