Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.0N5P6D Arachis hypogaea HOM05D004858 ORTHO05D005600 3.3e-29 131.0 63 100.0
arahy.Tifrunner.gnm1.ann1.HTA6FY Arachis hypogaea HOM05D004858 ORTHO05D005600 3.3e-29 131.0 63 100.0
CANSAT01G1371 Cannabis sativa HOM05D004858 ORTHO05D005600 4.1e-11 70.9 51 70.6
Actinidia36402 Actinidia chinensis HOM05D004858 ORTHO05D005600 1.2e-10 69.3 56 66.1
Haze_03960 Corylus avellana HOM05D004858 ORTHO05D005600 1.5e-10 68.9 52 69.2
QL06p038187 Quercus lobata HOM05D004858 ORTHO05D005600 1.5e-10 68.9 52 71.2
Cfa006798 Carpinus fangiana HOM05D004858 ORTHO05D005600 2.6e-10 68.2 52 69.2
PGR102G0524 Punica granatum HOM05D004858 ORTHO05D005600 2.6e-10 68.2 51 68.6
Glyma.05G110100 Glycine max HOM05D004858 ORTHO05D005600 3.4e-10 67.8 52 71.2
Rhsim08G0089100 Rhododendron simsii HOM05D004858 ORTHO05D005600 3.4e-10 67.8 56 60.7
arahy.Tifrunner.gnm1.ann1.J6YKXI Arachis hypogaea HOM05D004858 ORTHO05D005600 5.9e-10 67.0 52 71.2
Glyma.17G157000 Glycine max HOM05D004858 ORTHO05D005600 1.0e-09 66.2 52 69.2
Phvul.003G231600 Phaseolus vulgaris HOM05D004858 ORTHO05D005600 1.3e-09 65.9 52 67.3
Dinv23069 Davidia involucrata HOM05D004858 ORTHO05D005600 1.7e-09 65.5 51 66.7
Dinv26980 Davidia involucrata HOM05D004858 ORTHO05D005600 1.7e-09 65.5 57 66.7
Gohir.D03G032400 Gossypium hirsutum HOM05D004858 ORTHO05D005600 1.7e-09 65.5 49 71.4
Gorai.003G034000 Gossypium raimondii HOM05D004858 ORTHO05D005600 1.7e-09 65.5 49 71.4
VMungo0251G0206 Vigna mungo HOM05D004858 ORTHO05D005600 1.7e-09 65.5 52 67.3
arahy.Tifrunner.gnm1.ann1.YV33P0 Arachis hypogaea HOM05D004858 ORTHO05D005600 2.2e-09 65.1 52 69.2
RcHm_v2.0_Chr2g0109411 Rosa chinensis HOM05D004858 ORTHO05D005600 2.9e-09 64.7 57 64.9
Gohir.A11G210700 Gossypium hirsutum HOM05D004858 ORTHO05D005600 3.8e-09 64.3 52 67.3
Gohir.A02G148000 Gossypium hirsutum HOM05D004858 ORTHO05D005600 8.5e-09 63.2 49 69.4
Atru.chr3.1087 Acer truncatum HOM05D004858 ORTHO05D005600 1.1e-08 62.8 53 67.9
Nn5g30705 Nelumbo nucifera HOM05D004858 ORTHO05D005600 1.1e-08 62.8 51 66.7
Ca_22084_v3 Cicer arietinum L. HOM05D004858 ORTHO05D005600 1.4e-08 62.4 55 67.3
COL.COLO4_11647 Corchorus olitorius HOM05D004858 ORTHO05D005600 1.4e-08 62.4 52 67.3
Duzib147G0425 Durio zibethinus HOM05D004858 ORTHO05D005600 1.9e-08 62.0 49 69.4
Hma1.2p1_1953F.1_g308860 Hydrangea macrophylla HOM05D004858 ORTHO05D005600 2.5e-08 61.6 54 61.1
THA.LOC104804193 Tarenaya hassleriana HOM05D004858 ORTHO05D005600 2.5e-08 61.6 56 58.9
Thecc.01G079800 Theobroma cacao HOM05D004858 ORTHO05D005600 4.2e-08 60.8 52 65.4
CSS0003752 Camellia sinensis var. sinensis HOM05D004858 ORTHO05D005600 5.5e-08 60.5 51 68.6
CSS0041224 Camellia sinensis var. sinensis HOM05D004858 ORTHO05D005600 5.5e-08 60.5 51 68.6
CSS0047057 Camellia sinensis var. sinensis HOM05D004858 ORTHO05D005600 5.5e-08 60.5 51 68.6
FvH4_1g18620 Fragaria vesca HOM05D004858 ORTHO05D005600 5.5e-08 60.5 52 63.5
FAN19G1409 Fragaria x ananassa HOM05D004858 ORTHO05D005600 5.5e-08 60.5 52 63.5
FAN23G1848 Fragaria x ananassa HOM05D004858 ORTHO05D005600 5.5e-08 60.5 52 63.5
THA.LOC104824932 Tarenaya hassleriana HOM05D004858 ORTHO05D005600 5.5e-08 60.5 61 52.5
CSS0011371 Camellia sinensis var. sinensis HOM05D004858 ORTHO05D005600 7.2e-08 60.1 60 58.3
Prupe.6G213100 Prunus persica HOM05D004858 ORTHO05D005600 7.2e-08 60.1 52 61.5
Cpa.g.sc129.47 Carica papaya HOM05D004858 ORTHO05D005600 9.4e-08 59.7 49 59.2
DCAR_025838 Daucus carota HOM05D004858 ORTHO05D005600 9.4e-08 59.7 52 59.6
FAN26G1754 Fragaria x ananassa HOM05D004858 ORTHO05D005600 9.4e-08 59.7 52 63.5
TWI74G1540 Tripterygium wilfordii HOM05D004858 ORTHO05D005600 9.4e-08 59.7 49 61.2
Ciclev10026828m.g Citrus clementina HOM05D004858 ORTHO05D005600 1.6e-07 58.9 52 59.6
Gohir.D11G212400 Gossypium hirsutum HOM05D004858 ORTHO05D005600 1.6e-07 58.9 42 69.0
Gorai.007G228300 Gossypium raimondii HOM05D004858 ORTHO05D005600 1.6e-07 58.9 42 69.0
MD02G1193900 Malus domestica HOM05D004858 ORTHO05D005600 1.6e-07 58.9 52 61.5
Peaxi162Scf00118g01314 Petunia axillaris HOM05D004858 ORTHO05D005600 1.6e-07 58.9 51 62.7
MSTRG.23644 Avicennia marina HOM05D004858 ORTHO05D005600 2.1e-07 58.5 54 57.4
CiPaw.08G148200 Carya illinoinensis HOM05D004858 ORTHO05D005600 2.1e-07 58.5 52 61.5
FAN28G0049 Fragaria x ananassa HOM05D004858 ORTHO05D005600 2.1e-07 58.5 52 61.5
THA.LOC104807646 Tarenaya hassleriana HOM05D004858 ORTHO05D005600 2.1e-07 58.5 52 63.5
Aqoxy6G01531 Aquilegia oxysepala HOM05D004858 ORTHO05D005600 2.7e-07 58.2 54 61.1
AL7G12840 Arabidopsis lyrata HOM05D004858 ORTHO05D005600 2.7e-07 58.2 52 59.6
Lj4g0010254 Lotus japonicus HOM05D004858 ORTHO05D005600 3.6e-07 57.8 53 66.0
Nn6g34570 Nelumbo nucifera HOM05D004858 ORTHO05D005600 3.6e-07 57.8 51 62.7
Carub.0007s0239 Capsella rubella HOM05D004858 ORTHO05D005600 4.6e-07 57.4 52 57.7
Lalb_Chr09g0329381 Lupinus albus HOM05D004858 ORTHO05D005600 4.6e-07 57.4 65 58.5
PSO675G0895 Papaver somniferum HOM05D004858 ORTHO05D005600 4.6e-07 57.4 51 54.9
Lalb_Chr05g0220461 Lupinus albus HOM05D004858 ORTHO05D005600 6.1e-07 57.0 64 56.2
Medtr4g097800 Medicago truncatula HOM05D004858 ORTHO05D005600 6.1e-07 57.0 54 64.8
Nitab4.5_0026287g0010 Nicotiana tabacum HOM05D004858 ORTHO05D005600 6.1e-07 57.0 52 59.6
Psat4g088320 Pisum sativum HOM05D004858 ORTHO05D005600 6.1e-07 57.0 53 62.3
CDE01G0584 Ceratophyllum demersum HOM05D004858 ORTHO05D005600 1.0e-06 56.2 51 58.8
Lalb_Chr16g0385901 Lupinus albus HOM05D004858 ORTHO05D005600 1.0e-06 56.2 64 57.8
Oeu061526.2 Olea europaea HOM05D004858 ORTHO05D005600 1.0e-06 56.2 54 57.4
CiPaw.07G039500 Carya illinoinensis HOM05D004858 ORTHO05D005600 1.4e-06 55.8 52 59.6
Duzib187G0061 Durio zibethinus HOM05D004858 ORTHO05D005600 1.4e-06 55.8 52 63.5
ATR0767G115 Amborella trichopoda HOM05D004858 ORTHO05D005600 1.8e-06 55.5 51 58.8
AT4G37830 Arabidopsis thaliana HOM05D004858 ORTHO05D005600 1.8e-06 55.5 52 55.8
Eucgr.I00649 Eucalyptus grandis HOM05D004858 ORTHO05D005600 2.3e-06 55.1 52 61.5
MBI16_g31809_MAGBIO Magnolia biondii HOM05D004858 ORTHO05D005600 3.0e-06 54.7 51 56.9
Manes.12G119200 Manihot esculenta HOM05D004858 ORTHO05D005600 3.0e-06 54.7 64 51.6
TAR381G0631 Trochodendron aralioides HOM05D004858 ORTHO05D005600 3.0e-06 54.7 51 56.9
TAR628G1120 Trochodendron aralioides HOM05D004858 ORTHO05D005600 3.0e-06 54.7 51 58.8
SalBow3G1594 Salvia bowleyana HOM05D004858 ORTHO05D005600 3.9e-06 54.3 59 47.5
SalBow3G4557 Salvia bowleyana HOM05D004858 ORTHO05D005600 3.9e-06 54.3 59 47.5
Cc07_g07610 Coffea canephora HOM05D004858 ORTHO05D005600 5.1e-06 53.9 59 49.2
Oeu014311.1 Olea europaea HOM05D004858 ORTHO05D005600 5.1e-06 53.9 54 53.7
TPR.G22417 Trifolium pratense HOM05D004858 ORTHO05D005600 5.1e-06 53.9 54 64.8
GSVIVG01006593001 Vitis vinifera HOM05D004858 ORTHO05D005600 6.7e-06 53.5 51 60.8
CARHR246220 Cardamine hirsuta HOM05D004858 ORTHO05D005600 8.8e-06 53.1 52 53.8
MBI16_g05028_MAGBIO Magnolia biondii HOM05D004858 ORTHO05D005600 8.8e-06 53.1 47 59.6
Nitab4.5_0002639g0030 Nicotiana tabacum HOM05D004858 ORTHO05D005600 8.8e-06 53.1 52 55.8


User provided reference genes

Program Settings