Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.0L2UMW Arachis hypogaea HOM05D005191 ORTHO05D006725 0.0e+00 1466.8 740 100.0
arahy.Tifrunner.gnm1.ann1.W0WM15 Arachis hypogaea HOM05D005191 ORTHO05D006725 0.0e+00 1458.7 740 99.5
Glyma.17G110600 Glycine max HOM05D005191 ORTHO05D006725 0.0e+00 1181.8 713 82.2
Glyma.13G160800 Glycine max HOM05D005191 ORTHO05D006725 0.0e+00 1154.8 714 80.7
Lalb_Chr12g0198261 Lupinus albus HOM05D005191 ORTHO05D006725 0.0e+00 1151.3 725 80.1
VMungo1215G2132 Vigna mungo HOM05D005191 ORTHO05D006725 0.0e+00 1148.7 713 80.2
Phvul.003G169500 Phaseolus vulgaris HOM05D005191 ORTHO05D006725 0.0e+00 1144.8 713 79.7
Lj4g0015768 Lotus japonicus HOM05D005191 ORTHO05D006725 0.0e+00 1116.3 731 77.0
Psat4g036440 Pisum sativum HOM05D005191 ORTHO05D006725 0.0e+00 1096.6 727 76.2
QL02p090053 Quercus lobata HOM05D005191 ORTHO05D006725 5.1e-312 1074.3 713 73.8
TPR.G7618 Trifolium pratense HOM05D005191 ORTHO05D006725 9.4e-309 1063.1 686 77.4
CiPaw.03G249200 Carya illinoinensis HOM05D005191 ORTHO05D006725 4.0e-307 1057.7 712 73.2
Thecc.09G133700 Theobroma cacao HOM05D005191 ORTHO05D006725 2.4e-304 1048.5 714 72.3
Prupe.7G249300 Prunus persica HOM05D005191 ORTHO05D006725 3.1e-304 1048.1 727 71.5
Cfa002299 Carpinus fangiana HOM05D005191 ORTHO05D006725 2.2e-302 1042.0 714 72.0
Gorai.004G107900 Gossypium raimondii HOM05D005191 ORTHO05D006725 3.0e-299 1031.6 715 70.8
MD02G1022800 Malus domestica HOM05D005191 ORTHO05D006725 5.2e-299 1030.8 719 70.5
MD15G1165500 Malus domestica HOM05D005191 ORTHO05D006725 8.8e-299 1030.0 732 69.9
CANSAT11G2540 Cannabis sativa HOM05D005191 ORTHO05D006725 1.5e-298 1029.2 721 70.6
RcHm_v2.0_Chr2g0087561 Rosa chinensis HOM05D005191 ORTHO05D006725 5.4e-296 1020.8 714 70.9
Gohir.A08G088900 Gossypium hirsutum HOM05D005191 ORTHO05D006725 7.0e-296 1020.4 715 70.2
Ciclev10007583m.g Citrus clementina HOM05D005191 ORTHO05D006725 3.8e-294 1014.6 714 70.4
COL.COLO4_15579 Corchorus olitorius HOM05D005191 ORTHO05D006725 1.5e-293 1012.7 729 69.1
FvH4_1g02530 Fragaria vesca HOM05D005191 ORTHO05D006725 1.2e-292 1009.6 714 70.0
FAN19G1407 Fragaria x ananassa HOM05D005191 ORTHO05D006725 4.7e-292 1007.7 714 69.9
Potri.006G065000 Populus trichocarpa HOM05D005191 ORTHO05D006725 1.8e-291 1005.7 715 69.9
CSS0021683 Camellia sinensis var. sinensis HOM05D005191 ORTHO05D006725 1.7e-289 999.2 734 67.7
FAN23G0864 Fragaria x ananassa HOM05D005191 ORTHO05D006725 2.2e-289 998.8 714 69.3
FAN26G1428 Fragaria x ananassa HOM05D005191 ORTHO05D006725 3.7e-289 998.0 714 69.3
FAN28G1162 Fragaria x ananassa HOM05D005191 ORTHO05D006725 1.1e-288 996.5 709 69.4
TWI63G0111 Tripterygium wilfordii HOM05D005191 ORTHO05D006725 1.8e-288 995.7 725 68.6
Eucgr.E03534 Eucalyptus grandis HOM05D005191 ORTHO05D006725 2.4e-288 995.3 743 67.6
TAR625G1134 Trochodendron aralioides HOM05D005191 ORTHO05D006725 1.2e-284 983.0 712 69.7
Potri.T124807 Populus trichocarpa HOM05D005191 ORTHO05D006725 1.4e-283 979.5 711 68.6
Potri.018G125171 Populus trichocarpa HOM05D005191 ORTHO05D006725 3.1e-283 978.4 711 68.6
TWI32G0152 Tripterygium wilfordii HOM05D005191 ORTHO05D006725 6.8e-283 977.2 725 67.2
THA.LOC104826555 Tarenaya hassleriana HOM05D005191 ORTHO05D006725 7.8e-279 963.8 716 65.4
Gohir.D08G100100 Gossypium hirsutum HOM05D005191 ORTHO05D006725 1.0e-278 963.4 672 70.5
CsaV3_1G027890 Cucumis sativus L. HOM05D005191 ORTHO05D006725 1.3e-278 963.0 729 65.6
Nn2g12129 Nelumbo nucifera HOM05D005191 ORTHO05D006725 3.9e-278 961.4 722 67.7
Sed0022210 Sechium edule HOM05D005191 ORTHO05D006725 4.3e-277 958.0 715 65.9
Sc18g0000280 Simmondsia chinensis HOM05D005191 ORTHO05D006725 5.6e-277 957.6 716 66.3
Medtr4g115450 Medicago truncatula HOM05D005191 ORTHO05D006725 9.5e-277 956.8 636 75.8
Rhsim03G0251800 Rhododendron simsii HOM05D005191 ORTHO05D006725 3.6e-276 954.9 712 67.6
Lj7A435G51 Lonicera japonica HOM05D005191 ORTHO05D006725 4.7e-276 954.5 724 65.5
ECA236G3625 Erigeron canadensis HOM05D005191 ORTHO05D006725 8.9e-275 950.3 707 64.8
CAN.G1663.1 Capsicum annuum HOM05D005191 ORTHO05D006725 3.4e-274 948.3 724 65.1
Sabra18G0106500 Salix brachista HOM05D005191 ORTHO05D006725 7.5e-274 947.2 735 65.7
Sopen07g001100 Solanum pennellii HOM05D005191 ORTHO05D006725 1.7e-273 946.0 730 64.7
Manes.06G046300 Manihot esculenta HOM05D005191 ORTHO05D006725 3.7e-273 944.9 715 65.7
Cc06_g08000 Coffea canephora HOM05D005191 ORTHO05D006725 2.4e-272 942.2 725 64.6
Cc06_g08010 Coffea canephora HOM05D005191 ORTHO05D006725 2.4e-272 942.2 725 64.6
Aqoxy7G02403 Aquilegia oxysepala HOM05D005191 ORTHO05D006725 3.2e-272 941.8 706 65.7
Lsat_1_v5_gn_8_61061 Lactuca sativa HOM05D005191 ORTHO05D006725 5.4e-272 941.0 700 64.7
PSO170G6846 Papaver somniferum HOM05D005191 ORTHO05D006725 1.0e-270 936.8 703 66.0
Cpa.g.sc46.51 Carica papaya HOM05D005191 ORTHO05D006725 3.0e-270 935.3 714 65.3
PSO017G2350 Papaver somniferum HOM05D005191 ORTHO05D006725 3.0e-270 935.3 703 66.3
MSTRG.26350 Avicennia marina HOM05D005191 ORTHO05D006725 3.3e-269 931.8 711 64.6
Migut.K00420 Erythranthe guttata HOM05D005191 ORTHO05D006725 3.6e-268 928.3 731 64.0
ClCG06G011590 Citrullus lanatus HOM05D005191 ORTHO05D006725 4.0e-267 924.9 782 60.2
Nitab4.5_0000374g0090 Nicotiana tabacum HOM05D005191 ORTHO05D006725 1.2e-266 923.3 689 65.2
Duzib150G0407 Durio zibethinus HOM05D005191 ORTHO05D006725 6.4e-265 917.5 735 64.6
Peaxi162Scf00088g01225 Petunia axillaris HOM05D005191 ORTHO05D006725 8.4e-265 917.1 729 62.6
HanXRQChr05g0143851 Helianthus annuus HOM05D005191 ORTHO05D006725 7.1e-264 914.1 710 63.5
Solyc07g007810.3 Solanum lycopersicum HOM05D005191 ORTHO05D006725 6.0e-263 911.0 729 62.7
SGA_v2.0_scaffold63G21813 Striga asiatica HOM05D005191 ORTHO05D006725 6.0e-263 911.0 731 62.8
AUR62013300 Chenopodium quinoa HOM05D005191 ORTHO05D006725 7.3e-261 904.0 727 62.9
PGR142G3543 Punica granatum HOM05D005191 ORTHO05D006725 4.0e-251 871.7 710 63.5
Hund26552 Selenicereus undatus HOM05D005191 ORTHO05D006725 8.4e-249 864.0 729 60.6
EL10Ac8g18733 Beta vulgaris HOM05D005191 ORTHO05D006725 1.4e-248 863.2 839 54.8
Dinv41468 Davidia involucrata HOM05D005191 ORTHO05D006725 1.3e-246 856.7 590 72.4
Aa31LG8G12200 Aethionema arabicum HOM05D005191 ORTHO05D006725 1.1e-245 853.6 711 60.9
Sp3g26260 Schrenkiella parvula HOM05D005191 ORTHO05D006725 4.3e-245 851.7 715 60.0
DCAR_009327 Daucus carota HOM05D005191 ORTHO05D006725 2.9e-241 839.0 725 59.7
A06p26710 Brassica napus HOM05D005191 ORTHO05D006725 1.4e-240 836.6 716 59.2
Atru.chr7.1956 Acer truncatum HOM05D005191 ORTHO05D006725 7.9e-239 830.9 541 73.8
BcaC01g02222 Brassica carinata HOM05D005191 ORTHO05D006725 2.5e-237 825.9 716 58.9
C03p67700 Brassica napus HOM05D005191 ORTHO05D006725 2.5e-237 825.9 716 58.9
AUR62011184 Chenopodium quinoa HOM05D005191 ORTHO05D006725 2.5e-237 825.9 739 59.0
AL3G44790 Arabidopsis lyrata HOM05D005191 ORTHO05D006725 6.2e-236 821.2 714 58.1
Actinidia26371 Actinidia chinensis HOM05D005191 ORTHO05D006725 8.2e-236 820.8 717 60.0
BcaB02g10775 Brassica carinata HOM05D005191 ORTHO05D006725 8.2e-236 820.8 710 58.7
BolSC21t60229H Brassica oleracea HOM05D005191 ORTHO05D006725 2.4e-235 819.3 720 58.2
Carub.0003s2755 Capsella rubella HOM05D005191 ORTHO05D006725 1.2e-234 817.0 712 57.4
AT2G11000 Arabidopsis thaliana HOM05D005191 ORTHO05D006725 5.8e-234 814.7 714 58.0
Nitab4.5_0005159g0010 Nicotiana tabacum HOM05D005191 ORTHO05D006725 6.5e-233 811.2 615 63.9
ATR0800G098 Amborella trichopoda HOM05D005191 ORTHO05D006725 4.3e-229 798.5 661 62.6
BraA06t25606Z Brassica rapa HOM05D005191 ORTHO05D006725 1.0e-222 777.3 734 55.7
MELO3C010304.2 Cucumis melo HOM05D005191 ORTHO05D006725 6.1e-215 751.5 748 54.3
SEGI_14008 Sequoiadendron giganteum HOM05D005191 ORTHO05D006725 4.4e-205 718.8 723 52.8
Thhalv10022576m.g Eutrema salsugineum HOM05D005191 ORTHO05D006725 1.3e-196 690.6 610 57.7
SalBow1G1849 Salvia bowleyana HOM05D005191 ORTHO05D006725 1.8e-195 686.8 622 56.1
GSVIVG01015604001 Vitis vinifera HOM05D005191 ORTHO05D006725 3.6e-183 646.0 472 68.2
vmacro06157 Vaccinium macrocarpon HOM05D005191 ORTHO05D006725 8.0e-183 644.8 454 70.0
Ca_21665_v3 Cicer arietinum L. HOM05D005191 ORTHO05D006725 1.0e-174 617.8 408 77.0
Ah.14g079340 Amaranthus hybridus HOM05D005191 ORTHO05D006725 5.2e-174 615.5 479 61.0
Mapoly0005s0239 Marchantia polymorpha HOM05D005191 ORTHO05D006725 1.7e-172 610.5 730 46.2
HPP92_010843 Vanilla planifolia HOM05D005191 ORTHO05D006725 3.7e-172 609.4 467 64.5
Pp3c26_8550 Physcomitrium patens HOM05D005191 ORTHO05D006725 2.0e-170 603.6 737 45.3
CARHR104890 Cardamine hirsuta HOM05D005191 ORTHO05D006725 6.0e-170 602.1 455 64.4
Oeu052176.1 Olea europaea HOM05D005191 ORTHO05D006725 7.0e-163 578.6 473 60.7
Haze_25489 Corylus avellana HOM05D005191 ORTHO05D006725 6.2e-159 565.5 436 66.7
Zm00001eb192130 Zea mays HOM05D005191 ORTHO05D006725 1.6e-151 540.8 422 62.1
Hund26401 Selenicereus undatus HOM05D005191 ORTHO05D006725 7.8e-146 521.9 480 57.1
AagrBONN_evm.TU.Sc2ySwM_344.2372 Anthoceros agrestis HOM05D005191 ORTHO05D006725 2.1e-143 513.8 687 43.1
Ca_06948_v3 Cicer arietinum L. HOM05D005191 ORTHO05D006725 9.6e-136 488.4 327 75.2
Os02g0803250 Oryza sativa ssp. japonica HOM05D005191 ORTHO05D006725 5.6e-128 462.6 683 41.1
unitig_0.g2715 Utricularia gibba HOM05D005191 ORTHO05D006725 1.8e-126 457.6 421 56.5
CBR_g29413 Chara braunii HOM05D005191 ORTHO05D006725 3.4e-125 453.4 750 37.9
Haze_25491 Corylus avellana HOM05D005191 ORTHO05D006725 8.4e-124 448.7 381 60.9
SMO174G0034 Selaginella moellendorffii HOM05D005191 ORTHO05D006725 1.1e-123 448.4 742 38.0
CDE05G1862 Ceratophyllum demersum HOM05D005191 ORTHO05D006725 1.1e-112 411.8 371 58.8
Actinidia38723 Actinidia chinensis HOM05D005191 ORTHO05D006725 1.7e-108 397.9 293 68.6
Sabra06G0047500 Salix brachista HOM05D005191 ORTHO05D006725 1.2e-101 375.2 308 62.0
GSVIVG01002648001 Vitis vinifera HOM05D005191 ORTHO05D006725 6.3e-87 326.2 223 72.6
Psat6g224720 Pisum sativum HOM05D005191 ORTHO05D006725 2.0e-80 304.7 214 70.6
vmacro06156 Vaccinium macrocarpon HOM05D005191 ORTHO05D006725 1.5e-64 251.9 245 55.1
FAN06G0842 Fragaria x ananassa HOM05D005191 ORTHO05D006725 6.6e-44 183.3 313 39.0
TPR.G8947 Trifolium pratense HOM05D005191 ORTHO05D006725 2.3e-41 174.9 116 75.9
unitig_0.g2716 Utricularia gibba HOM05D005191 ORTHO05D006725 1.3e-39 169.1 150 59.3
Rhsim13G0106800 Rhododendron simsii HOM05D005191 ORTHO05D006725 1.7e-39 168.7 142 62.7
Nitab4.5_0005159g0020 Nicotiana tabacum HOM05D005191 ORTHO05D006725 8.6e-36 156.4 115 67.8
CDE05G1976 Ceratophyllum demersum HOM05D005191 ORTHO05D006725 1.2e-32 146.0 159 47.2
PRCOL_00001705 Prasinoderma coloniale HOM05D005191 ORTHO05D006725 5.8e-32 143.7 540 26.9
Actinidia38722 Actinidia chinensis HOM05D005191 ORTHO05D006725 3.2e-30 137.9 162 47.5
Cre06.g300650 Chlamydomonas reinhardtii HOM05D005191 ORTHO05D006725 1.3e-28 132.5 818 23.3
RcHm_v2.0_Chr5g0051701 Rosa chinensis HOM05D005191 ORTHO05D006725 9.0e-25 119.8 132 49.2
FvH4_7g23890 Fragaria vesca HOM05D005191 ORTHO05D006725 3.8e-23 114.4 85 63.5
FAN06G5005 Fragaria x ananassa HOM05D005191 ORTHO05D006725 1.1e-22 112.8 267 34.8
FAN10G4062 Fragaria x ananassa HOM05D005191 ORTHO05D006725 6.6e-20 103.6 126 51.6
MBI13_g29624_MAGBIO Magnolia biondii HOM05D005191 ORTHO05D006725 6.2e-18 97.1 66 63.6
FAN10G2766 Fragaria x ananassa HOM05D005191 ORTHO05D006725 1.1e-17 96.3 82 58.5
FAN26G2291 Fragaria x ananassa HOM05D005191 ORTHO05D006725 1.8e-17 95.5 84 60.7
FAN15G1193 Fragaria x ananassa HOM05D002169 ORTHO05D006927 2.6e-16 91.7 74 59.5
Rhsim05G0138400 Rhododendron simsii HOM05D005191 ORTHO05D006725 4.5e-16 90.9 115 51.3
COL.COLO4_23752 Corchorus olitorius HOM05D005191 ORTHO05D016248 3.2e-14 84.7 61 67.2
COL.COLO4_21409 Corchorus olitorius HOM05D005191 ORTHO05D016248 1.3e-12 79.3 56 69.6
Rhsim10G0150400 Rhododendron simsii HOM05D005191 ORTHO05D030537 1.1e-11 76.3 51 70.6
GSVIVG01012804001 Vitis vinifera HOM05D005191 ORTHO05D006725 1.5e-11 75.9 51 68.6
FvH4_1g29180 Fragaria vesca HOM05D005191 ORTHO05D025363 9.6e-11 73.2 51 66.7
Sp3g26280 Schrenkiella parvula HOM05D005191 ORTHO05D012938 9.6e-11 73.2 51 70.6
Thhalv10022959m.g Eutrema salsugineum HOM05D005191 ORTHO05D006725 7.6e-08 63.5 97 40.2
arahy.Tifrunner.gnm1.ann1.GZYG19 Arachis hypogaea HOM05D000607 ORTHO05D000518 5.5e-06 57.4 39 69.2


User provided reference genes

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