Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.0IPW5R Arachis hypogaea HOM05D005413 ORTHO05D006536 1.3e-137 493.0 250 100.0
arahy.Tifrunner.gnm1.ann1.BD57S3 Arachis hypogaea HOM05D005413 ORTHO05D006536 1.0e-134 483.4 250 98.0
Lj5g0017620 Lotus japonicus HOM05D005413 ORTHO05D006536 1.5e-77 293.5 249 65.9
Medtr1g090350 Medicago truncatula HOM05D005413 ORTHO05D006536 6.7e-65 251.5 253 57.7
Ca_10423_v3 Cicer arietinum L. HOM05D005413 ORTHO05D006536 5.6e-64 248.4 250 56.4
Lalb_Chr21g0312751 Lupinus albus HOM05D005413 ORTHO05D006536 8.4e-60 234.6 234 59.0
TPR.G10267 Trifolium pratense HOM05D005413 ORTHO05D006536 4.8e-55 218.8 214 58.9
Phvul.007G136700 Phaseolus vulgaris HOM05D005413 ORTHO05D006536 6.3e-55 218.4 188 66.0
Dinv04422 Davidia involucrata HOM05D005413 ORTHO05D006536 1.1e-40 171.0 207 51.7
CSS0050484 Camellia sinensis var. sinensis HOM05D005413 ORTHO05D006536 2.0e-37 160.2 247 43.7
Potri.010G244600 Populus trichocarpa HOM05D005413 ORTHO05D006536 1.1e-35 154.5 213 46.5
Sabra10G0191100 Salix brachista HOM05D005413 ORTHO05D006536 4.7e-34 149.1 200 46.5
Potri.008G001700 Populus trichocarpa HOM05D005413 ORTHO05D006536 1.4e-33 147.5 213 43.2
Cfa010502 Carpinus fangiana HOM05D005413 ORTHO05D006536 3.0e-33 146.4 250 42.4
Potri.008G015500 Populus trichocarpa HOM05D005413 ORTHO05D006536 5.7e-32 142.1 213 42.3
TAR623G0045 Trochodendron aralioides HOM05D005413 ORTHO05D006536 1.7e-31 140.6 214 43.9
Hund06812 Selenicereus undatus HOM05D005413 ORTHO05D006536 2.8e-31 139.8 205 46.3
CSS0023574 Camellia sinensis var. sinensis HOM05D005413 ORTHO05D006536 4.8e-31 139.0 208 42.8
Ciclev10028962m.g Citrus clementina HOM05D005413 ORTHO05D006536 1.4e-30 137.5 208 42.8
QL04p048808 Quercus lobata HOM05D005413 ORTHO05D006536 1.4e-30 137.5 270 37.8
Dinv03807 Davidia involucrata HOM05D005413 ORTHO05D006536 1.8e-30 137.1 166 50.0
Hma1.2p1_0098F.1_g048260 Hydrangea macrophylla HOM05D005413 ORTHO05D006536 2.4e-30 136.7 199 46.2
AUR62024117 Chenopodium quinoa HOM05D005413 ORTHO05D006536 3.1e-30 136.3 262 39.3
Sabra08G0009400 Salix brachista HOM05D005413 ORTHO05D006536 4.1e-30 136.0 208 42.3
Nn2g14375 Nelumbo nucifera HOM05D005413 ORTHO05D006536 5.3e-30 135.6 208 44.2
Thecc.09G267600 Theobroma cacao HOM05D005413 ORTHO05D006536 5.3e-30 135.6 211 41.7
TAR633G2414 Trochodendron aralioides HOM05D005413 ORTHO05D006536 7.0e-30 135.2 199 44.2
AUR62005613 Chenopodium quinoa HOM05D005413 ORTHO05D006536 2.6e-29 133.3 209 42.6
Lj2A950G18 Lonicera japonica HOM05D005413 ORTHO05D006536 2.6e-29 133.3 203 42.9
Gohir.A05G077100 Gossypium hirsutum HOM05D005413 ORTHO05D006536 1.7e-28 130.6 214 40.2
Gohir.D05G079900 Gossypium hirsutum HOM05D005413 ORTHO05D006536 2.9e-28 129.8 214 40.7
Gorai.009G081500 Gossypium raimondii HOM05D005413 ORTHO05D006536 2.9e-28 129.8 214 40.7
MBI15_g31416_MAGBIO Magnolia biondii HOM05D005413 ORTHO05D006536 3.8e-28 129.4 255 40.0
Thecc.10G119400 Theobroma cacao HOM05D005413 ORTHO05D006536 3.8e-28 129.4 208 40.9
CiPaw.14G092700 Carya illinoinensis HOM05D005413 ORTHO05D006536 6.5e-28 128.6 204 41.7
TWI79G1192 Tripterygium wilfordii HOM05D005413 ORTHO05D006536 6.5e-28 128.6 212 40.6
Peaxi162Scf00429g00512 Petunia axillaris HOM05D005413 ORTHO05D006536 1.5e-27 127.5 196 41.8
Haze_03431 Corylus avellana HOM05D005413 ORTHO05D006536 1.9e-27 127.1 244 41.0
Duzib170G0305 Durio zibethinus HOM05D005413 ORTHO05D006536 2.5e-27 126.7 213 38.5
Lalb_Chr19g0136161 Lupinus albus HOM05D005413 ORTHO05D006536 4.2e-27 125.9 212 41.0
Oeu033267.1 Olea europaea HOM05D005413 ORTHO05D006536 5.5e-27 125.6 206 42.7
QL01p019216 Quercus lobata HOM05D005413 ORTHO05D006536 5.5e-27 125.6 202 41.1
COL.COLO4_00160 Corchorus olitorius HOM05D005413 ORTHO05D006536 1.6e-26 124.0 207 40.6
Rhsim03G0094100 Rhododendron simsii HOM05D005413 ORTHO05D006536 1.6e-26 124.0 112 61.6
Hma1.2p1_0101F.1_g049660 Hydrangea macrophylla HOM05D005413 ORTHO05D006536 2.7e-26 123.2 247 39.7
MSTRG.12398 Avicennia marina HOM05D005413 ORTHO05D006536 4.7e-26 122.5 211 40.3
Dinv18856 Davidia involucrata HOM05D005413 ORTHO05D006536 4.7e-26 122.5 206 39.3
Duzib168G1403 Durio zibethinus HOM05D005413 ORTHO05D006536 4.7e-26 122.5 211 38.9
Actinidia37056 Actinidia chinensis HOM05D005413 ORTHO05D006536 6.1e-26 122.1 251 35.5
Nitab4.5_0000158g0110 Nicotiana tabacum HOM05D005413 ORTHO05D006536 1.4e-25 120.9 238 36.6
RcHm_v2.0_Chr5g0049091 Rosa chinensis HOM05D005413 ORTHO05D006536 2.3e-25 120.2 213 38.0
GSVIVG01037530001 Vitis vinifera HOM05D005413 ORTHO05D006536 3.0e-25 119.8 210 38.1
Lj3g0006130 Lotus japonicus HOM05D005413 ORTHO05D006536 5.2e-25 119.0 205 37.1
vmacro07276 Vaccinium macrocarpon HOM05D005413 ORTHO05D006536 6.7e-25 118.6 99 64.6
Nitab4.5_0008364g0010 Nicotiana tabacum HOM05D005413 ORTHO05D006536 8.8e-25 118.2 218 37.2
Sc09g0004800 Simmondsia chinensis HOM05D005413 ORTHO05D006536 1.2e-24 117.9 253 34.8
Actinidia11676 Actinidia chinensis HOM05D005413 ORTHO05D006536 1.5e-24 117.5 206 38.8
Cc01_g07840 Coffea canephora HOM05D005413 ORTHO05D006536 2.6e-24 116.7 202 39.1
Oeu031446.2 Olea europaea HOM05D005413 ORTHO05D006536 2.6e-24 116.7 212 38.2
TPR.G4599 Trifolium pratense HOM05D005413 ORTHO05D006536 2.6e-24 116.7 210 36.2
arahy.Tifrunner.gnm1.ann1.C0JSMI Arachis hypogaea HOM05D005413 ORTHO05D006536 4.4e-24 115.9 230 37.4
FvH4_3g26150 Fragaria vesca HOM05D005413 ORTHO05D006536 4.4e-24 115.9 213 38.0
FAN11G2501 Fragaria x ananassa HOM05D005413 ORTHO05D006536 5.7e-24 115.5 197 39.1
arahy.Tifrunner.gnm1.ann1.K4CWT5 Arachis hypogaea HOM05D005413 ORTHO05D006536 7.5e-24 115.2 230 37.4
Medtr4g050330 Medicago truncatula HOM05D005413 ORTHO05D006536 9.7e-24 114.8 210 36.7
EL10Ac6g13493 Beta vulgaris HOM05D005413 ORTHO05D006536 1.3e-23 114.4 210 37.6
Ah.03g136210 Amaranthus hybridus HOM05D005413 ORTHO05D006536 2.2e-23 113.6 260 35.0
ECA238G0598 Erigeron canadensis HOM05D005413 ORTHO05D006536 2.2e-23 113.6 213 40.4
Migut.D02382 Erythranthe guttata HOM05D005413 ORTHO05D006536 2.2e-23 113.6 212 39.2
FAN16G0400 Fragaria x ananassa HOM05D005413 ORTHO05D006536 2.2e-23 113.6 234 34.6
FAN16G2334 Fragaria x ananassa HOM05D005413 ORTHO05D006536 2.2e-23 113.6 234 34.6
PGSC0003DMG400002998 Solanum tuberosum HOM05D005413 ORTHO05D006536 2.8e-23 113.2 215 37.2
ATR1120G017 Amborella trichopoda HOM05D005413 ORTHO05D006536 3.7e-23 112.8 208 39.9
Lsat_1_v5_gn_2_106300 Lactuca sativa HOM05D005413 ORTHO05D006536 4.8e-23 112.5 190 41.6
SGA_v2.0_scaffold22G09835 Striga asiatica HOM05D005413 ORTHO05D006536 4.8e-23 112.5 172 43.0
VMungo1127G2102 Vigna mungo HOM05D005413 ORTHO05D006536 6.3e-23 112.1 204 37.3
Manes.11G103700 Manihot esculenta HOM05D005413 ORTHO05D006536 8.2e-23 111.7 170 44.7
MD11G1174800 Malus domestica HOM05D005413 ORTHO05D006536 1.8e-22 110.5 208 37.0
SEGI_03865 Sequoiadendron giganteum HOM05D005413 ORTHO05D006536 2.4e-22 110.2 176 42.0
Solyc11g071950.3 Solanum lycopersicum HOM05D005413 ORTHO05D006536 4.1e-22 109.4 215 36.3
Sopen11g029620 Solanum pennellii HOM05D005413 ORTHO05D006536 4.1e-22 109.4 215 36.3
MELO3C014525.2 Cucumis melo HOM05D005413 ORTHO05D006536 9.1e-22 108.2 199 37.7
CsaV3_6G038630 Cucumis sativus L. HOM05D005413 ORTHO05D006536 9.1e-22 108.2 202 37.1
CDE04G1023 Ceratophyllum demersum HOM05D005413 ORTHO05D006536 1.2e-21 107.8 194 38.7
Phvul.011G100200 Phaseolus vulgaris HOM05D005413 ORTHO05D006536 1.2e-21 107.8 204 36.3
PGR119G0748 Punica granatum HOM05D005413 ORTHO05D006536 1.2e-21 107.8 226 35.4
Prupe.6G147200 Prunus persica HOM05D005413 ORTHO05D006536 1.6e-21 107.5 208 36.5
FAN25G1874 Fragaria x ananassa HOM05D005413 ORTHO05D006536 2.0e-21 107.1 195 36.9
unitig_899.g15382 Utricularia gibba HOM05D005413 ORTHO05D006536 2.7e-21 106.7 207 37.7
Atru.chr3.3078 Acer truncatum HOM05D005413 ORTHO05D006536 7.7e-21 105.1 210 36.2
Atru.chr3.3087 Acer truncatum HOM05D005413 ORTHO05D006536 7.7e-21 105.1 210 36.2
Ca_19483_v3 Cicer arietinum L. HOM05D005413 ORTHO05D006536 7.7e-21 105.1 207 36.2
ClCG02G022490 Citrullus lanatus HOM05D005413 ORTHO05D006536 7.7e-21 105.1 199 37.2
Haze_03425 Corylus avellana HOM05D005413 ORTHO05D006536 1.0e-20 104.8 184 39.7
Lj2C36T10 Lonicera japonica HOM05D005413 ORTHO05D006536 2.9e-20 103.2 177 42.4
PSO339G2181 Papaver somniferum HOM05D005413 ORTHO05D006536 1.1e-19 101.3 290 32.4
Eucgr.J00585 Eucalyptus grandis HOM05D005413 ORTHO05D006536 1.5e-19 100.9 197 37.1
Lalb_Chr03g0028501 Lupinus albus HOM05D005413 ORTHO05D006536 2.5e-19 100.1 201 36.3
Sed0018758 Sechium edule HOM05D005413 ORTHO05D006536 2.5e-19 100.1 155 39.4
CDE07G0886 Ceratophyllum demersum HOM05D005413 ORTHO05D006536 7.2e-19 98.6 92 58.7
Glyma.12G095900 Glycine max HOM05D005413 ORTHO05D006536 9.4e-19 98.2 204 34.8
PSO384G0849 Papaver somniferum HOM05D005413 ORTHO05D006536 9.4e-19 98.2 289 31.8
DCAR_012252 Daucus carota HOM05D005413 ORTHO05D006536 2.7e-18 96.7 108 51.9
HPP92_015644 Vanilla planifolia HOM05D005413 ORTHO05D006536 2.7e-18 96.7 123 48.0
Psat7g200680 Pisum sativum HOM05D005413 ORTHO05D006536 3.6e-18 96.3 206 34.0
HanXRQChr05g0137071 Helianthus annuus HOM05D005413 ORTHO05D006536 6.1e-18 95.5 135 45.9
DCAR_018207 Daucus carota HOM05D005413 ORTHO05D006536 1.0e-17 94.7 251 33.9
Thhalv10014324m.g Eutrema salsugineum HOM05D005413 ORTHO05D006536 1.0e-17 94.7 218 34.9
MD03G1159500 Malus domestica HOM05D005413 ORTHO05D006536 1.0e-17 94.7 208 33.7
SalBow6G6902 Salvia bowleyana HOM05D005413 ORTHO05D006536 4.0e-17 92.8 120 47.5
BcaC01g06609 Brassica carinata HOM05D005413 ORTHO05D006536 2.0e-16 90.5 211 32.2
BolC3t13687H Brassica oleracea HOM05D005413 ORTHO05D006536 2.0e-16 90.5 211 32.2
Aqoxy1G00612 Aquilegia oxysepala HOM05D005413 ORTHO05D006536 3.4e-16 89.7 215 34.0
Os03g0274700 Oryza sativa ssp. japonica HOM05D005413 ORTHO05D006536 4.4e-16 89.4 152 41.4
Zm00001eb012330 Zea mays HOM05D005413 ORTHO05D006536 4.4e-16 89.4 217 33.6
Glyma.11G171773 Glycine max HOM05D005413 ORTHO05D006536 7.5e-16 88.6 267 29.2
vmacro14313 Vaccinium macrocarpon HOM05D005413 ORTHO05D006536 9.8e-16 88.2 257 31.1
A03p10550 Brassica napus HOM05D005413 ORTHO05D006536 1.3e-15 87.8 132 39.4
BraA03t10367Z Brassica rapa HOM05D005413 ORTHO05D006536 1.7e-15 87.4 211 31.8
C03p12140 Brassica napus HOM05D005413 ORTHO05D006536 4.8e-15 85.9 206 32.0
Sp6g23150 Schrenkiella parvula HOM05D005413 ORTHO05D006536 5.4e-14 82.4 218 32.1
Rhsim01G0199900 Rhododendron simsii HOM05D005413 ORTHO05D006536 9.1e-14 81.6 306 27.1
CARHR191490 Cardamine hirsuta HOM05D005413 ORTHO05D006536 4.5e-13 79.3 152 36.8
AagrBONN_evm.TU.Sc2ySwM_344.2258 Anthoceros agrestis HOM05D004246 ORTHO05D005035 1.7e-12 77.4 105 41.9
Mapoly0068s0092 Marchantia polymorpha HOM05D005852 ORTHO05D006688 2.3e-12 77.0 91 46.2
SEGI_29962 Sequoiadendron giganteum HOM05D005852 ORTHO05D000002 2.5e-11 73.6 183 29.0
FAN21G0466 Fragaria x ananassa HOM05D005413 ORTHO05D006536 3.2e-11 73.2 197 31.0
Rhsim01G0199600 Rhododendron simsii HOM05D005413 ORTHO05D006536 3.2e-11 73.2 321 25.9
THA.LOC104815083 Tarenaya hassleriana HOM05D005413 ORTHO05D006536 9.5e-11 71.6 215 29.8
Cpa.g.sc33.125 Carica papaya HOM05D005413 ORTHO05D006536 1.0e-09 68.2 94 43.6
SMO236G0022 Selaginella moellendorffii HOM05D017472 ORTHO05D006688 4.0e-09 66.2 90 41.1
Aa31LG1G13390 Aethionema arabicum HOM05D005413 ORTHO05D006536 5.2e-09 65.9 127 36.2
Oeu029208.1 Olea europaea HOM05D005413 ORTHO05D006536 2.0e-08 63.9 85 47.1
THA.LOC104810942 Tarenaya hassleriana HOM05D001091 ORTHO05D001020 5.7e-08 62.4 95 38.9
PGR044G1324 Punica granatum HOM05D003044 ORTHO05D001869 7.5e-08 62.0 70 48.6
Dinv33562 Davidia involucrata HOM05D005413 ORTHO05D006536 1.7e-07 60.8 89 40.4
BcaB01g04747 Brassica carinata HOM05D005413 ORTHO05D006536 6.3e-07 58.9 197 27.4
BcaB05g22753 Brassica carinata HOM05D005413 ORTHO05D006536 3.1e-06 56.6 94 38.3
Carub.0006s1968 Capsella rubella HOM05D005413 ORTHO05D006536 4.1e-06 56.2 92 39.1
AT5G22040 Arabidopsis thaliana HOM05D005413 ORTHO05D006536 5.4e-06 55.8 89 39.3
AL6G33000 Arabidopsis lyrata HOM05D005413 ORTHO05D006536 9.2e-06 55.1 89 38.2


User provided reference genes

Program Settings