Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.0IE2SQ Arachis hypogaea HOM05D005008 ORTHO05D006092 8.6e-75 283.5 136 100.0
arahy.Tifrunner.gnm1.ann1.LRUS99 Arachis hypogaea HOM05D005008 ORTHO05D006092 1.1e-72 276.6 136 98.5
arahy.Tifrunner.gnm1.ann1.L1LZAQ Arachis hypogaea HOM05D005008 ORTHO05D006092 3.3e-66 255.0 125 99.2
arahy.Tifrunner.gnm1.ann1.67HGNM Arachis hypogaea HOM05D005008 ORTHO05D006092 4.1e-61 238.0 116 99.1
TPR.G38259 Trifolium pratense HOM05D005008 ORTHO05D006092 5.1e-59 231.1 133 78.9
VMungo0251G1441 Vigna mungo HOM05D005008 ORTHO05D006092 7.3e-58 227.3 132 79.5
Psat7g129160 Pisum sativum HOM05D005008 ORTHO05D006092 3.6e-57 224.9 133 75.9
TPR.G27448 Trifolium pratense HOM05D005008 ORTHO05D006092 3.6e-57 224.9 133 75.9
Glyma.20G018300 Glycine max HOM05D005008 ORTHO05D006092 6.2e-57 224.2 132 77.3
Ca_18750_v3 Cicer arietinum L. HOM05D005008 ORTHO05D006092 8.1e-57 223.8 133 75.9
Lalb_Chr16g0385131 Lupinus albus HOM05D005008 ORTHO05D006092 1.8e-56 222.6 134 72.4
Medtr4g084320 Medicago truncatula HOM05D005008 ORTHO05D006092 1.2e-55 219.9 133 75.9
Phvul.002G096700 Phaseolus vulgaris HOM05D005008 ORTHO05D006092 1.2e-55 219.9 132 76.5
Prupe.6G148300 Prunus persica HOM05D005008 ORTHO05D006092 2.6e-55 218.8 131 75.6
Lalb_Chr05g0219631 Lupinus albus HOM05D005008 ORTHO05D006092 1.7e-54 216.1 133 72.2
MD11G1175100 Malus domestica HOM05D005008 ORTHO05D006092 3.2e-53 211.8 131 72.5
Lj2g0024950 Lotus japonicus HOM05D005008 ORTHO05D006092 9.3e-53 210.3 134 70.1
Manes.11G103800 Manihot esculenta HOM05D005008 ORTHO05D006092 6.0e-52 207.6 131 71.8
MD03G1160100 Malus domestica HOM05D005008 ORTHO05D006092 1.3e-51 206.5 135 66.7
RcHm_v2.0_Chr5g0049161 Rosa chinensis HOM05D005008 ORTHO05D006092 1.7e-51 206.1 131 69.5
CiPaw.13G126400 Carya illinoinensis HOM05D005008 ORTHO05D006092 3.0e-51 205.3 131 71.0
CsaV3_1G043620 Cucumis sativus L. HOM05D005008 ORTHO05D006092 5.1e-51 204.5 131 71.0
MELO3C015091.2 Cucumis melo HOM05D005008 ORTHO05D006092 8.7e-51 203.8 131 71.0
ClCG03G012390 Citrullus lanatus HOM05D005008 ORTHO05D006092 1.5e-50 203.0 131 69.5
Sed0018780 Sechium edule HOM05D005008 ORTHO05D006092 3.3e-50 201.8 131 71.0
Cc01_g07910 Coffea canephora HOM05D005008 ORTHO05D006092 5.6e-50 201.1 131 69.5
Dinv18863 Davidia involucrata HOM05D005008 ORTHO05D006092 7.3e-50 200.7 131 69.5
Sp1g07130 Schrenkiella parvula HOM05D005008 ORTHO05D006092 7.3e-50 200.7 135 65.9
Thhalv10019305m.g Eutrema salsugineum HOM05D005008 ORTHO05D006092 2.1e-49 199.1 135 65.2
RcHm_v2.0_Chr7g0230441 Rosa chinensis HOM05D005008 ORTHO05D006092 3.6e-49 198.4 131 68.7
Sabra09G0000700 Salix brachista HOM05D005008 ORTHO05D006092 3.6e-49 198.4 129 65.9
Cfa010212 Carpinus fangiana HOM05D005008 ORTHO05D006092 1.1e-48 196.8 130 70.8
Potri.009G001100 Populus trichocarpa HOM05D005008 ORTHO05D006092 3.1e-48 195.3 129 65.1
Carub.0001s0784 Capsella rubella HOM05D005008 ORTHO05D006092 4.0e-48 194.9 131 66.4
CARHR008370 Cardamine hirsuta HOM05D005008 ORTHO05D006092 4.0e-48 194.9 135 64.4
Nitab4.5_0002426g0070 Nicotiana tabacum HOM05D005008 ORTHO05D006092 4.0e-48 194.9 131 67.2
AT1G08480 Arabidopsis thaliana HOM05D005008 ORTHO05D006092 6.9e-48 194.1 132 65.9
Dinv21730 Davidia involucrata HOM05D005008 ORTHO05D006092 9.0e-48 193.7 132 67.4
Nitab4.5_0003644g0030 Nicotiana tabacum HOM05D005008 ORTHO05D006092 1.2e-47 193.4 132 65.9
Nitab4.5_0005569g0020 Nicotiana tabacum HOM05D005008 ORTHO05D006092 1.2e-47 193.4 131 66.4
FAN04G2231 Fragaria x ananassa HOM05D005008 ORTHO05D006092 1.5e-47 193.0 129 69.8
Hund18808 Selenicereus undatus HOM05D005008 ORTHO05D006092 3.4e-47 191.8 132 64.4
Solyc06g073900.3 Solanum lycopersicum HOM05D005008 ORTHO05D006092 3.4e-47 191.8 132 65.2
Solyc11g071790.2 Solanum lycopersicum HOM05D005008 ORTHO05D006092 3.4e-47 191.8 131 64.9
Sopen06g030300 Solanum pennellii HOM05D005008 ORTHO05D006092 3.4e-47 191.8 132 65.2
Nitab4.5_0015902g0010 Nicotiana tabacum HOM05D005008 ORTHO05D006092 5.8e-47 191.0 131 65.6
Peaxi162Scf00098g00148 Petunia axillaris HOM05D005008 ORTHO05D006092 5.8e-47 191.0 131 65.6
Sopen11g029460 Solanum pennellii HOM05D005008 ORTHO05D006092 5.8e-47 191.0 131 64.9
PGSC0003DMG400002990 Solanum tuberosum HOM05D005008 ORTHO05D006092 5.8e-47 191.0 131 64.9
Ciclev10029485m.g Citrus clementina HOM05D005008 ORTHO05D006092 7.6e-47 190.7 129 67.4
FAN13G1722 Fragaria x ananassa HOM05D005008 ORTHO05D006092 7.6e-47 190.7 128 68.8
Sc21g0006720 Simmondsia chinensis HOM05D005008 ORTHO05D006092 9.9e-47 190.3 131 64.1
CSS0002518 Camellia sinensis var. sinensis HOM05D005008 ORTHO05D006092 1.3e-46 189.9 129 66.7
Eucgr.J00592 Eucalyptus grandis HOM05D005008 ORTHO05D006092 1.3e-46 189.9 130 64.6
FAN18G0191 Fragaria x ananassa HOM05D005008 ORTHO05D006092 1.3e-46 189.9 127 69.3
A06p05480 Brassica napus HOM05D005008 ORTHO05D006092 1.7e-46 189.5 134 64.2
CAN.G1463.18 Capsicum annuum HOM05D005008 ORTHO05D006092 1.7e-46 189.5 131 64.9
PGSC0003DMG400005906 Solanum tuberosum HOM05D005008 ORTHO05D006092 1.7e-46 189.5 131 64.9
BraA06t23756Z Brassica rapa HOM05D005008 ORTHO05D006092 2.2e-46 189.1 134 64.2
FAN08G1342 Fragaria x ananassa HOM05D005008 ORTHO05D006092 2.2e-46 189.1 128 68.0
Peaxi162Scf00717g00217 Petunia axillaris HOM05D005008 ORTHO05D006092 2.2e-46 189.1 131 64.1
PGR083G2197 Punica granatum HOM05D005008 ORTHO05D006092 2.2e-46 189.1 130 64.6
Rhsim13G0198500 Rhododendron simsii HOM05D005008 ORTHO05D006092 2.9e-46 188.7 130 66.2
THA.LOC104815294 Tarenaya hassleriana HOM05D005008 ORTHO05D006092 3.8e-46 188.3 131 63.4
BcaB07g34092 Brassica carinata HOM05D005008 ORTHO05D006092 4.9e-46 188.0 135 63.7
C05p06590 Brassica napus HOM05D005008 ORTHO05D006092 4.9e-46 188.0 135 63.7
BolC5t29419H Brassica oleracea HOM05D005008 ORTHO05D006092 4.9e-46 188.0 135 63.7
BcaB03g13330 Brassica carinata HOM05D005008 ORTHO05D006092 6.4e-46 187.6 133 63.9
AL1G18910 Arabidopsis lyrata HOM05D005008 ORTHO05D006092 8.4e-46 187.2 149 59.7
THA.LOC104808952 Tarenaya hassleriana HOM05D005008 ORTHO05D006092 1.1e-45 186.8 132 63.6
A08p35120 Brassica napus HOM05D005008 ORTHO05D006092 2.4e-45 185.7 133 63.2
BraA08t35421Z Brassica rapa HOM05D005008 ORTHO05D006092 2.4e-45 185.7 133 63.2
Gohir.D08G017500 Gossypium hirsutum HOM05D005008 ORTHO05D006092 2.4e-45 185.7 129 64.3
Gorai.004G011900 Gossypium raimondii HOM05D005008 ORTHO05D006092 2.4e-45 185.7 129 64.3
BcaC07g38394 Brassica carinata HOM05D005008 ORTHO05D006092 3.2e-45 185.3 130 63.8
C08p11520 Brassica napus HOM05D005008 ORTHO05D006092 3.2e-45 185.3 130 63.8
BolC8t48832H Brassica oleracea HOM05D005008 ORTHO05D006092 3.2e-45 185.3 130 63.8
Gohir.A08G007400 Gossypium hirsutum HOM05D005008 ORTHO05D006092 3.2e-45 185.3 129 64.3
Duzib168G2291 Durio zibethinus HOM05D005008 ORTHO05D006092 4.2e-45 184.9 135 60.7
Atru.chr3.3067 Acer truncatum HOM05D005008 ORTHO05D006092 5.4e-45 184.5 131 64.9
Aa31LG5G14080 Aethionema arabicum HOM05D005008 ORTHO05D006092 7.1e-45 184.1 131 64.1
Duzib170G0524 Durio zibethinus HOM05D005008 ORTHO05D006092 1.2e-44 183.3 135 60.7
Thecc.09G268300 Theobroma cacao HOM05D005008 ORTHO05D006092 2.1e-44 182.6 135 60.7
Sc12g0000410 Simmondsia chinensis HOM05D005008 ORTHO05D006092 2.7e-44 182.2 132 62.9
Lj2E351T1 Lonicera japonica HOM05D005008 ORTHO05D006092 6.0e-44 181.0 121 68.6
Aa31LG2G20300 Aethionema arabicum HOM05D005008 ORTHO05D006092 7.9e-44 180.6 128 64.8
TWI31G0222 Tripterygium wilfordii HOM05D005008 ORTHO05D006092 2.3e-43 179.1 127 66.9
EL10Ac7g16268 Beta vulgaris HOM05D005008 ORTHO05D006092 3.9e-43 178.3 133 57.9
Hma1.2p1_0101F.1_g049710 Hydrangea macrophylla HOM05D005008 ORTHO05D006092 3.9e-43 178.3 131 61.1
AUR62001577 Chenopodium quinoa HOM05D005008 ORTHO05D006092 2.5e-42 175.6 133 61.7
Aqoxy7G02777 Aquilegia oxysepala HOM05D005008 ORTHO05D006092 5.6e-42 174.5 132 62.9
unitig_746.g26601 Utricularia gibba HOM05D005008 ORTHO05D006092 1.6e-41 172.9 134 61.2
GSVIVG01028464001 Vitis vinifera HOM05D005008 ORTHO05D006092 1.6e-41 172.9 129 58.9
Lsat_1_v5_gn_6_104840 Lactuca sativa HOM05D005008 ORTHO05D006092 2.1e-41 172.6 132 60.6
unitig_899.g15386 Utricularia gibba HOM05D005008 ORTHO05D006092 4.8e-41 171.4 134 59.7
ATR1136G073 Amborella trichopoda HOM05D005008 ORTHO05D006092 1.1e-40 170.2 130 59.2
vmacro04058 Vaccinium macrocarpon HOM05D005008 ORTHO05D006092 1.1e-40 170.2 130 61.5
TAR628G1298 Trochodendron aralioides HOM05D005008 ORTHO05D006092 3.1e-40 168.7 131 56.5
Oeu031444.1 Olea europaea HOM05D005008 ORTHO05D006092 4.0e-40 168.3 130 60.8
MSTRG.18800 Avicennia marina HOM05D005008 ORTHO05D006092 5.3e-40 167.9 130 60.0
Migut.D02371 Erythranthe guttata HOM05D005008 ORTHO05D006092 1.2e-39 166.8 130 60.0
Migut.D02374 Erythranthe guttata HOM05D005008 ORTHO05D006092 1.2e-39 166.8 130 60.0
QL02p021765 Quercus lobata HOM05D005008 ORTHO05D006092 2.0e-39 166.0 201 44.8
MSTRG.21002 Avicennia marina HOM05D005008 ORTHO05D006092 4.9e-38 161.4 125 60.8
COL.COLO4_25364 Corchorus olitorius HOM05D005008 ORTHO05D006092 8.4e-38 160.6 128 59.4
MBI17_g21974_MAGBIO Magnolia biondii HOM05D005008 ORTHO05D006092 8.4e-38 160.6 127 58.3
ECA246G4934 Erigeron canadensis HOM05D005008 ORTHO05D006092 1.9e-37 159.5 121 59.5
HanXRQChr05g0163331 Helianthus annuus HOM05D005008 ORTHO05D006092 3.2e-37 158.7 133 55.6
DCAR_021985 Daucus carota HOM05D005008 ORTHO05D006092 7.9e-36 154.1 132 60.6
Ah.01g003330 Amaranthus hybridus HOM05D005008 ORTHO05D006092 1.5e-34 149.8 213 37.6
SGA_v2.0_scaffold114G31950 Striga asiatica HOM05D005008 ORTHO05D006092 1.5e-34 149.8 131 54.2
SEGI_09212 Sequoiadendron giganteum HOM05D005008 ORTHO05D006092 3.3e-34 148.7 135 50.4
MBI17_g21976_MAGBIO Magnolia biondii HOM05D000527 ORTHO05D000559 9.6e-34 147.1 122 56.6
Haze_23598 Corylus avellana HOM05D005008 ORTHO05D006092 1.4e-32 143.3 96 68.8
CDE05G0523 Ceratophyllum demersum HOM05D005008 ORTHO05D006092 2.6e-31 139.0 131 46.6
CDE04G3167 Ceratophyllum demersum HOM05D005008 ORTHO05D006092 5.8e-31 137.9 131 45.8
FvH4_5g32770 Fragaria vesca HOM05D005008 ORTHO05D006092 1.9e-29 132.9 82 73.2
PSO325G0018 Papaver somniferum HOM05D005008 ORTHO05D006092 5.5e-29 131.3 133 50.4
PSO144G0132 Papaver somniferum HOM05D005008 ORTHO05D006092 2.3e-27 125.9 132 48.5
Nn1g08680 Nelumbo nucifera HOM05D005008 ORTHO05D006092 1.1e-26 123.6 81 69.1
Atru.chr5.2770 Acer truncatum HOM05D005008 ORTHO05D006092 5.7e-26 121.3 85 65.9
Os08g0112800 Oryza sativa ssp. japonica HOM05D005008 ORTHO05D006092 1.2e-23 113.6 128 41.4
Zm00001eb173990 Zea mays HOM05D005008 ORTHO05D006092 3.4e-23 112.1 129 40.3
Zm00001eb260600 Zea mays HOM05D005008 ORTHO05D006092 7.6e-23 110.9 129 39.5
PSO478G0762 Papaver somniferum HOM05D005008 ORTHO05D006092 1.3e-22 110.2 118 45.8
Mapoly0024s0049 Marchantia polymorpha HOM05D005008 ORTHO05D006092 5.0e-22 108.2 134 43.3
PSO017G3706 Papaver somniferum HOM05D005008 ORTHO05D006092 6.5e-22 107.8 118 45.8
Sed0017043 Sechium edule HOM05D005008 ORTHO05D006092 6.5e-22 107.8 83 60.2
PSO017G4122 Papaver somniferum HOM05D005008 ORTHO05D006092 8.5e-22 107.5 118 45.8
HPP92_002034 Vanilla planifolia HOM05D005008 ORTHO05D006092 7.2e-21 104.4 129 37.2
AUR62020205 Chenopodium quinoa HOM05D005008 ORTHO05D006092 7.9e-20 100.9 85 57.6
PSO339G0217 Papaver somniferum HOM05D005008 ORTHO05D006092 3.0e-19 99.0 114 43.0
BcaB07g32561 Brassica carinata HOM05D005008 ORTHO05D006092 6.7e-19 97.8 85 55.3
Pp3c1_6020 Physcomitrium patens HOM05D005008 ORTHO05D006092 6.7e-19 97.8 131 38.9
SalBow6G2115 Salvia bowleyana HOM05D005008 ORTHO05D006092 8.8e-19 97.4 182 35.7
Pp3c7_24330 Physcomitrium patens HOM05D005008 ORTHO05D006092 1.1e-18 97.1 131 39.7
PSO541G3575 Papaver somniferum HOM05D005008 ORTHO05D006092 2.5e-18 95.9 94 47.9
SMO364G0346 Selaginella moellendorffii HOM05D005008 ORTHO05D006092 2.5e-13 79.3 109 39.4
TPR.G18466 Trifolium pratense HOM05D005008 ORTHO05D006092 9.4e-13 77.4 50 64.0
PSO447G0120 Papaver somniferum HOM05D005008 ORTHO05D006092 9.7e-10 67.4 62 50.0


User provided reference genes

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