Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.0I1Q5M Arachis hypogaea HOM05D002512 ORTHO05D002660 1.2e-127 459.9 251 100.0
arahy.Tifrunner.gnm1.ann1.0ZJB3J Arachis hypogaea HOM05D002512 ORTHO05D002660 1.3e-116 423.3 249 90.4
arahy.Tifrunner.gnm1.ann1.LSN1P0 Arachis hypogaea HOM05D002512 ORTHO05D002660 2.6e-101 372.5 216 89.4
Manes.07G010600 Manihot esculenta HOM05D002512 ORTHO05D002660 1.3e-63 247.3 224 58.0
Lalb_Chr04g0263841 Lupinus albus HOM05D002512 ORTHO05D002660 3.4e-61 239.2 229 57.6
QL04p010027 Quercus lobata HOM05D002512 ORTHO05D002660 2.1e-58 229.9 263 55.1
arahy.Tifrunner.gnm1.ann1.CG0SMC Arachis hypogaea HOM05D002512 ORTHO05D002660 3.9e-57 225.7 259 55.6
arahy.Tifrunner.gnm1.ann1.5T8TQ9 Arachis hypogaea HOM05D002512 ORTHO05D002660 8.8e-57 224.6 260 55.0
TPR.G14550 Trifolium pratense HOM05D002512 ORTHO05D002660 1.5e-56 223.8 248 56.0
CiPaw.14G003200 Carya illinoinensis HOM05D002512 ORTHO05D002660 2.0e-56 223.4 232 56.5
Thecc.01G406400 Theobroma cacao HOM05D002512 ORTHO05D002660 2.0e-56 223.4 215 58.1
CANSAT80G1785 Cannabis sativa HOM05D002512 ORTHO05D002660 2.5e-56 223.0 212 57.5
Duzib138G1858 Durio zibethinus HOM05D002512 ORTHO05D002660 3.3e-56 222.6 210 58.1
Lj9A641T63 Lonicera japonica HOM05D002512 ORTHO05D002660 2.2e-55 219.9 235 59.6
TWI09G0383 Tripterygium wilfordii HOM05D002512 ORTHO05D002660 2.8e-55 219.5 280 48.9
Ca_14514_v3 Cicer arietinum L. HOM05D002512 ORTHO05D002660 6.3e-55 218.4 256 56.2
Lj3g0023886 Lotus japonicus HOM05D002512 ORTHO05D002660 1.4e-54 217.2 243 56.8
CiPaw.13G007900 Carya illinoinensis HOM05D002512 ORTHO05D002660 9.1e-54 214.5 193 61.7
Prupe.2G024300 Prunus persica HOM05D002512 ORTHO05D002660 9.1e-54 214.5 267 51.7
VMungo1080G0592 Vigna mungo HOM05D002512 ORTHO05D002660 9.1e-54 214.5 222 56.3
Psat5g212040 Pisum sativum HOM05D002512 ORTHO05D002660 1.2e-53 214.2 265 53.2
MD07G1024500 Malus domestica HOM05D002512 ORTHO05D002660 1.5e-53 213.8 263 47.9
MD02G1300300 Malus domestica HOM05D002512 ORTHO05D002660 2.6e-53 213.0 296 44.9
Haze_03147 Corylus avellana HOM05D002512 ORTHO05D002660 5.9e-53 211.8 254 52.0
CsaV3_3G031920 Cucumis sativus L. HOM05D002512 ORTHO05D002660 5.9e-53 211.8 264 51.1
vmacro21139 Vaccinium macrocarpon HOM05D002512 ORTHO05D002660 1.0e-52 211.1 227 54.6
Potri.001G261900 Populus trichocarpa HOM05D002512 ORTHO05D002660 1.3e-52 210.7 205 55.1
Ciclev10031090m.g Citrus clementina HOM05D002512 ORTHO05D002660 1.7e-52 210.3 245 51.0
PGR031G2578 Punica granatum HOM05D002512 ORTHO05D002660 1.7e-52 210.3 251 53.8
Rhsim01G0126000 Rhododendron simsii HOM05D002512 ORTHO05D002660 1.7e-52 210.3 212 55.2
Haze_03144 Corylus avellana HOM05D002512 ORTHO05D002660 2.9e-52 209.5 254 51.6
Gohir.D08G163400 Gossypium hirsutum HOM05D002512 ORTHO05D002660 2.9e-52 209.5 252 51.2
Glyma.11G160275 Glycine max HOM05D002512 ORTHO05D002660 3.8e-52 209.1 195 63.6
Gohir.A08G142400 Gossypium hirsutum HOM05D002512 ORTHO05D002660 3.8e-52 209.1 246 53.7
Gorai.004G170200 Gossypium raimondii HOM05D002512 ORTHO05D002660 3.8e-52 209.1 246 53.7
Phvul.005G035600 Phaseolus vulgaris HOM05D002512 ORTHO05D002660 3.8e-52 209.1 222 59.5
Sc10g0000350 Simmondsia chinensis HOM05D002512 ORTHO05D002660 3.8e-52 209.1 249 48.2
Actinidia21537 Actinidia chinensis HOM05D002512 ORTHO05D002660 5.0e-52 208.8 234 55.1
Dinv07432 Davidia involucrata HOM05D002512 ORTHO05D002660 6.5e-52 208.4 208 59.1
Medtr3g033520 Medicago truncatula HOM05D002512 ORTHO05D002660 1.1e-51 207.6 199 61.8
GSVIVG01032213001 Vitis vinifera HOM05D002512 ORTHO05D002660 1.4e-51 207.2 261 50.2
TAR623G0444 Trochodendron aralioides HOM05D002512 ORTHO05D002660 7.2e-51 204.9 243 47.7
SGA_v2.0_scaffold4G02485 Striga asiatica HOM05D002512 ORTHO05D002660 1.6e-50 203.8 266 47.4
Migut.B01265 Erythranthe guttata HOM05D002512 ORTHO05D002660 2.1e-50 203.4 245 53.5
Cpa.g.sc125.48 Carica papaya HOM05D002512 ORTHO05D002660 2.7e-50 203.0 224 50.4
ClCG10G012160 Citrullus lanatus HOM05D002512 ORTHO05D002660 3.6e-50 202.6 264 47.0
Atru.chr11.2513 Acer truncatum HOM05D002512 ORTHO05D002660 4.7e-50 202.2 256 53.5
Sed0013128 Sechium edule HOM05D002512 ORTHO05D002660 4.7e-50 202.2 256 51.6
Peaxi162Scf01270g00119 Petunia axillaris HOM05D002512 ORTHO05D002660 1.8e-49 200.3 262 48.5
Potri.009G056700 Populus trichocarpa HOM05D002512 ORTHO05D002660 1.8e-49 200.3 266 47.7
MELO3C023999.2 Cucumis melo HOM05D002512 ORTHO05D002660 3.0e-49 199.5 272 48.5
Eucgr.G03321 Eucalyptus grandis HOM05D002512 ORTHO05D002660 8.8e-49 198.0 242 52.1
Lsat_1_v5_gn_1_104941 Lactuca sativa HOM05D002512 ORTHO05D002660 8.8e-49 198.0 268 48.5
SalBow5G3219 Salvia bowleyana HOM05D002512 ORTHO05D002660 8.8e-49 198.0 272 48.9
CSS0045747 Camellia sinensis var. sinensis HOM05D002512 ORTHO05D002660 1.1e-48 197.6 219 53.4
MSTRG.17007 Avicennia marina HOM05D002512 ORTHO05D002660 1.5e-48 197.2 238 47.5
Hma1.2p1_0685F.1_g203230 Hydrangea macrophylla HOM05D002512 ORTHO05D002660 2.0e-48 196.8 226 55.3
Oeu027369.1 Olea europaea HOM05D002512 ORTHO05D002660 2.0e-48 196.8 213 52.1
Oeu047604.1 Olea europaea HOM05D002512 ORTHO05D002660 2.6e-48 196.4 263 46.0
FAN01G0945 Fragaria x ananassa HOM05D002512 ORTHO05D002660 7.4e-48 194.9 245 47.3
FAN01G1015 Fragaria x ananassa HOM05D002512 ORTHO05D002660 7.4e-48 194.9 245 47.3
Manes.10G136100 Manihot esculenta HOM05D002512 ORTHO05D002660 1.7e-47 193.7 143 67.1
FAN10G3807 Fragaria x ananassa HOM05D002512 ORTHO05D002660 2.2e-47 193.4 226 50.0
Nitab4.5_0001244g0080 Nicotiana tabacum HOM05D002512 ORTHO05D002660 3.7e-47 192.6 259 47.1
THA.LOC104819101 Tarenaya hassleriana HOM05D002512 ORTHO05D002660 3.7e-47 192.6 263 44.9
RcHm_v2.0_Chr1g0318441 Rosa chinensis HOM05D002512 ORTHO05D002660 5.3e-46 188.7 230 50.4
Nitab4.5_0008942g0010 Nicotiana tabacum HOM05D002512 ORTHO05D002660 9.1e-46 188.0 274 44.2
MSTRG.20557 Avicennia marina HOM05D002512 ORTHO05D002660 1.2e-45 187.6 288 40.6
EL10Ac2g04372 Beta vulgaris HOM05D002512 ORTHO05D002660 1.2e-45 187.6 249 51.0
Sed0002676 Sechium edule HOM05D002512 ORTHO05D002660 2.0e-45 186.8 246 50.8
PGSC0003DMG400006835 Solanum tuberosum HOM05D002512 ORTHO05D002660 2.0e-45 186.8 293 41.0
BraA02t05190Z Brassica rapa HOM05D002512 ORTHO05D002660 4.5e-45 185.7 272 46.3
Sopen01g034820 Solanum pennellii HOM05D002512 ORTHO05D002660 4.5e-45 185.7 295 41.7
A02p02160 Brassica napus HOM05D002512 ORTHO05D002660 5.9e-45 185.3 272 46.0
Cc02_g28800 Coffea canephora HOM05D002512 ORTHO05D002660 5.9e-45 185.3 265 43.8
FAN06G4412 Fragaria x ananassa HOM05D002512 ORTHO05D002660 5.9e-45 185.3 237 51.9
Nn7g36333 Nelumbo nucifera HOM05D002512 ORTHO05D002660 7.7e-45 184.9 261 44.1
DCAR_003227 Daucus carota HOM05D002512 ORTHO05D002660 1.3e-44 184.1 228 45.6
Hund25523 Selenicereus undatus HOM05D002512 ORTHO05D002660 1.3e-44 184.1 250 48.8
Sabra09G0041500 Salix brachista HOM05D002512 ORTHO05D002660 2.2e-44 183.3 297 41.8
Solyc01g087890.3 Solanum lycopersicum HOM05D002512 ORTHO05D002660 2.2e-44 183.3 295 43.7
PSO339G2823 Papaver somniferum HOM05D002512 ORTHO05D002660 3.8e-44 182.6 253 48.6
HanXRQChr01g0007801 Helianthus annuus HOM05D002512 ORTHO05D002660 5.0e-44 182.2 143 63.6
BcaNung04187 Brassica carinata HOM05D002512 ORTHO05D002660 8.5e-44 181.4 227 46.7
Aqoxy1G00326 Aquilegia oxysepala HOM05D002512 ORTHO05D002660 1.1e-43 181.0 251 47.0
Oeu049475.1 Olea europaea HOM05D002512 ORTHO05D002660 1.1e-43 181.0 253 42.7
BcaNung04188 Brassica carinata HOM05D001269 ORTHO05D002660 2.5e-43 179.9 261 46.0
FAN03G2673 Fragaria x ananassa HOM05D002512 ORTHO05D002660 7.2e-43 178.3 282 42.9
C02p06410 Brassica napus HOM05D001269 ORTHO05D002660 1.2e-42 177.6 152 58.6
CARHR199680 Cardamine hirsuta HOM05D002512 ORTHO05D002660 1.2e-42 177.6 231 48.1
arahy.Tifrunner.gnm1.ann1.F65ZHY Arachis hypogaea HOM05D002512 ORTHO05D002660 2.1e-42 176.8 249 54.6
Ah.16g100660 Amaranthus hybridus HOM05D002512 ORTHO05D002660 3.6e-42 176.0 253 47.8
Thhalv10013102m.g Eutrema salsugineum HOM05D002512 ORTHO05D002660 4.7e-42 175.6 230 46.1
unitig_8.g3867 Utricularia gibba HOM05D002512 ORTHO05D002660 4.7e-42 175.6 202 45.0
Cfa010810 Carpinus fangiana HOM05D002512 ORTHO05D002660 6.1e-42 175.3 131 64.9
Sp6g30260 Schrenkiella parvula HOM05D002512 ORTHO05D002660 6.1e-42 175.3 282 40.4
BolC2t06587H Brassica oleracea HOM05D002512 ORTHO05D002660 8.0e-42 174.9 279 44.1
C09p63330 Brassica napus HOM05D001269 ORTHO05D002660 1.0e-41 174.5 277 46.2
BraA10t44521Z Brassica rapa HOM05D001269 ORTHO05D002660 1.4e-41 174.1 149 61.1
PSO384G4049 Papaver somniferum HOM05D002512 ORTHO05D002660 1.4e-41 174.1 258 46.5
BcaC04g24255 Brassica carinata HOM05D002512 ORTHO05D002660 1.8e-41 173.7 152 58.6
unitig_61.g26458 Utricularia gibba HOM05D002512 ORTHO05D002660 1.8e-41 173.7 256 46.1
A10p24580 Brassica napus HOM05D001269 ORTHO05D002660 2.3e-41 173.3 251 47.8
AL6G24380 Arabidopsis lyrata HOM05D002512 ORTHO05D002660 3.0e-41 172.9 278 45.0
AT5G13760 Arabidopsis thaliana HOM05D002512 ORTHO05D002660 3.0e-41 172.9 278 45.7
BcaC04g19082 Brassica carinata HOM05D002512 ORTHO05D002660 4.0e-41 172.6 284 44.7
Aa31LG4G6730 Aethionema arabicum HOM05D002512 ORTHO05D002660 2.6e-40 169.9 243 42.8
BolC9t59170H Brassica oleracea HOM05D002512 ORTHO05D002660 4.4e-40 169.1 284 44.4
Carub.0006s1194 Capsella rubella HOM05D002512 ORTHO05D002660 7.5e-40 168.3 271 40.2
MBI17_g15562_MAGBIO Magnolia biondii HOM05D002512 ORTHO05D002660 7.0e-38 161.8 143 55.9
Nn2g15196 Nelumbo nucifera HOM05D002512 ORTHO05D002660 1.3e-36 157.5 257 41.6
Dinv43404 Davidia involucrata HOM05D002512 ORTHO05D002660 5.0e-36 155.6 112 66.1
Sabra16G0160700 Salix brachista HOM05D002512 ORTHO05D002660 3.2e-35 152.9 266 40.6
FvH4_7g01810 Fragaria vesca HOM05D002512 ORTHO05D002660 2.1e-34 150.2 124 62.1
CAN.G909.1 Capsicum annuum HOM05D002512 ORTHO05D002660 8.0e-34 148.3 127 56.7
CDE05G2343 Ceratophyllum demersum HOM05D002512 ORTHO05D002660 2.3e-33 146.7 220 40.5
COL.COLO4_12335 Corchorus olitorius HOM05D002512 ORTHO05D002660 1.5e-32 144.1 113 61.1
HPP92_012088 Vanilla planifolia HOM05D002512 ORTHO05D002660 2.0e-32 143.7 153 47.1
Zm00001eb110610 Zea mays HOM05D002512 ORTHO05D002660 8.8e-25 118.2 185 40.5
Os07g0656100 Oryza sativa ssp. japonica HOM05D002512 ORTHO05D002660 2.6e-24 116.7 183 37.7
ECA248G1655 Erigeron canadensis HOM05D002512 ORTHO05D002660 3.7e-15 86.3 204 37.7
ATR0320G026 Amborella trichopoda HOM05D002512 ORTHO05D002660 8.3e-15 85.1 132 37.1
AUR62023096 Chenopodium quinoa HOM05D002512 ORTHO05D002660 3.9e-12 76.3 58 62.1
AUR62009419 Chenopodium quinoa HOM05D002512 ORTHO05D002660 5.0e-12 75.9 58 62.1
SalBow8G3232 Salvia bowleyana HOM05D002512 ORTHO05D002660 5.6e-11 72.4 65 55.4
SalBow1G5037 Salvia bowleyana HOM05D001898 ORTHO05D002580 2.8e-10 70.1 60 58.3
Eucgr.G03302 Eucalyptus grandis HOM05D002512 ORTHO05D002660 1.0e-09 68.2 55 61.8
SEGI_37974 Sequoiadendron giganteum HOM05D002512 ORTHO05D002660 4.0e-09 66.2 215 26.5
RcHm_v2.0_Chr2g0108781 Rosa chinensis HOM05D002512 ORTHO05D035506 2.2e-07 60.5 102 41.2


User provided reference genes

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