Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.0HPI60 Arachis hypogaea HOM05D000106 ORTHO05D031568 2.4e-30 134.8 66 100.0
arahy.Tifrunner.gnm1.ann1.HR8ZWH Arachis hypogaea HOM05D000106 ORTHO05D003154 5.4e-22 107.1 57 93.0
arahy.Tifrunner.gnm1.ann1.QB4GTW Arachis hypogaea HOM05D000106 ORTHO05D003154 5.4e-22 107.1 57 93.0
GSVIVG01017926001 Vitis vinifera HOM05D000106 ORTHO05D003154 6.1e-18 93.6 63 76.2
Actinidia40169 Actinidia chinensis HOM05D000106 ORTHO05D003154 2.3e-17 91.7 66 66.7
Actinidia23489 Actinidia chinensis HOM05D000106 ORTHO05D003154 1.2e-16 89.4 66 65.2
ClCG06G005990 Citrullus lanatus HOM05D000106 ORTHO05D003154 1.2e-16 89.4 66 66.7
CsaV3_6G038270 Cucumis sativus L. HOM05D000106 ORTHO05D003154 1.2e-16 89.4 66 66.7
Gohir.A02G117200 Gossypium hirsutum HOM05D000106 ORTHO05D003154 3.4e-16 87.8 66 66.7
Gohir.A05G277766 Gossypium hirsutum HOM05D000106 ORTHO05D003154 3.4e-16 87.8 66 66.7
Gohir.D05G172900 Gossypium hirsutum HOM05D000106 ORTHO05D003154 3.4e-16 87.8 66 66.7
MELO3C014492.2 Cucumis melo HOM05D000106 ORTHO05D003154 5.7e-16 87.0 61 68.9
FAN07G2668 Fragaria x ananassa HOM05D000106 ORTHO05D003154 7.5e-16 86.7 61 72.1
Manes.03G181300 Manihot esculenta HOM05D000106 ORTHO05D003154 1.3e-15 85.9 59 71.2
TWI09G0906 Tripterygium wilfordii HOM05D000106 ORTHO05D003154 1.3e-15 85.9 66 66.7
Gohir.D09G216700 Gossypium hirsutum HOM05D000106 ORTHO05D003154 2.2e-15 85.1 63 69.8
FvH4_4g15050 Fragaria vesca HOM05D000106 ORTHO05D003154 6.3e-15 83.6 59 71.2
FAN12G0571 Fragaria x ananassa HOM05D000106 ORTHO05D003154 6.3e-15 83.6 59 71.2
FAN22G1799 Fragaria x ananassa HOM05D000106 ORTHO05D003154 6.3e-15 83.6 59 71.2
TWI53G2129 Tripterygium wilfordii HOM05D000106 ORTHO05D003154 8.3e-15 83.2 66 63.6
Lj6A597G84 Lonicera japonica HOM05D000106 ORTHO05D003154 1.8e-14 82.0 64 64.1
Nn1g02240 Nelumbo nucifera HOM05D000106 ORTHO05D003154 1.8e-14 82.0 66 62.1
Atru.chr4.2514 Acer truncatum HOM05D000106 ORTHO05D003154 5.4e-14 80.5 61 68.9
Nn1g02241 Nelumbo nucifera HOM05D000106 ORTHO05D003154 5.4e-14 80.5 64 60.9
Cpa.g.sc8.323 Carica papaya HOM05D000106 ORTHO05D003154 9.2e-14 79.7 58 67.2
TAR628G0939 Trochodendron aralioides HOM05D000106 ORTHO05D003154 9.2e-14 79.7 64 62.5
FAN17G0612 Fragaria x ananassa HOM05D000106 ORTHO05D003154 2.7e-13 78.2 50 76.0
QL06p003366 Quercus lobata HOM05D000106 ORTHO05D003154 2.7e-13 78.2 50 76.0
Eucgr.H03552 Eucalyptus grandis HOM05D000106 ORTHO05D003154 3.5e-13 77.8 62 66.1
Gohir.A09G214200 Gossypium hirsutum HOM05D000106 ORTHO05D003154 4.5e-13 77.4 56 69.6
HanXRQChr10g0296571 Helianthus annuus HOM05D000106 ORTHO05D003154 4.5e-13 77.4 58 63.8
RcHm_v2.0_Chr4g0416811 Rosa chinensis HOM05D000106 ORTHO05D003154 4.5e-13 77.4 49 77.6
AT3G05990 Arabidopsis thaliana HOM05D000106 ORTHO05D003154 1.0e-12 76.3 66 57.6
AL3G16800 Arabidopsis lyrata HOM05D000106 ORTHO05D003154 2.3e-12 75.1 61 59.0
Gohir.D02G175550 Gossypium hirsutum HOM05D000106 ORTHO05D003154 2.3e-12 75.1 52 71.2
Gorai.006G237200 Gossypium raimondii HOM05D000106 ORTHO05D003154 2.3e-12 75.1 52 71.2
arahy.Tifrunner.gnm1.ann1.MV0HP9 Arachis hypogaea HOM05D000106 ORTHO05D031568 3.9e-12 74.3 40 90.0
CiPaw.02G095200 Carya illinoinensis HOM05D000106 ORTHO05D003154 6.6e-12 73.6 59 61.0
Lj5g0007179 Lotus japonicus HOM05D000106 ORTHO05D003154 6.6e-12 73.6 60 65.0
Sed0001724 Sechium edule HOM05D000106 ORTHO05D003154 6.6e-12 73.6 66 60.6
Glyma.20G143600 Glycine max HOM05D000106 ORTHO05D003154 1.5e-11 72.4 43 81.4
Thecc.04G227200 Theobroma cacao HOM05D000106 ORTHO05D003154 1.5e-11 72.4 61 62.3
TPR.G5543 Trifolium pratense HOM05D000106 ORTHO05D003154 1.5e-11 72.4 60 63.3
Psat6g208760 Pisum sativum HOM05D000106 ORTHO05D003154 1.9e-11 72.0 43 81.4
CANSAT78G1182 Cannabis sativa HOM05D000106 ORTHO05D003154 2.5e-11 71.6 62 59.7
Ca_10925_v3 Cicer arietinum L. HOM05D000106 ORTHO05D003154 3.3e-11 71.2 42 81.0
EL10Ac9g21839 Beta vulgaris HOM05D000106 ORTHO05D003154 4.3e-11 70.9 64 48.4
Potri.010G090800 Populus trichocarpa HOM05D000106 ORTHO05D003154 4.3e-11 70.9 50 68.0
Glyma.10G250000 Glycine max HOM05D000106 ORTHO05D003154 1.6e-10 68.9 41 80.5
MD05G1080300 Malus domestica HOM05D000106 ORTHO05D003154 2.1e-10 68.6 59 54.2
Manes.07G082800 Manihot esculenta HOM05D000106 ORTHO05D003154 2.1e-10 68.6 59 57.6
CsaV3_7G008640 Cucumis sativus L. HOM05D000106 ORTHO05D003154 2.8e-10 68.2 64 51.6
Medtr1g104850 Medicago truncatula HOM05D000106 ORTHO05D003154 2.8e-10 68.2 42 78.6
MSTRG.21843 Avicennia marina HOM05D000106 ORTHO05D003154 3.6e-10 67.8 60 63.3
AUR62011448 Chenopodium quinoa HOM05D000106 ORTHO05D003154 4.7e-10 67.4 64 46.9
Thhalv10020522m.g Eutrema salsugineum HOM05D000106 ORTHO05D003154 4.7e-10 67.4 66 53.0
Sabra10G0052700 Salix brachista HOM05D000106 ORTHO05D003154 4.7e-10 67.4 48 68.8
GSVIVG01031750001 Vitis vinifera HOM05D000106 ORTHO05D003154 4.7e-10 67.4 51 58.8
Cc02_g18750 Coffea canephora HOM05D000106 ORTHO05D003154 6.1e-10 67.0 64 50.0
Prupe.8G124100 Prunus persica HOM05D000106 ORTHO05D003154 6.1e-10 67.0 56 57.1
Rhsim04G0205000 Rhododendron simsii HOM05D000106 ORTHO05D003154 6.1e-10 67.0 66 51.5
ClCG02G005890 Citrullus lanatus HOM05D000106 ORTHO05D003154 8.0e-10 66.6 64 50.0
PGR004G1792 Punica granatum HOM05D000106 ORTHO05D003154 8.0e-10 66.6 61 60.7
VMungo0720G1257 Vigna mungo HOM05D000106 ORTHO05D003154 8.0e-10 66.6 43 74.4
MD16G1188700 Malus domestica HOM05D000106 ORTHO05D003154 1.0e-09 66.2 56 62.5
Peaxi162Scf00437g00514 Petunia axillaris HOM05D000106 ORTHO05D003154 1.0e-09 66.2 49 65.3
Atru.chr5.2708 Acer truncatum HOM05D000106 ORTHO05D003154 1.4e-09 65.9 56 60.7
Cpa.g.sc62.14 Carica papaya HOM05D000106 ORTHO05D003154 1.4e-09 65.9 64 48.4
Hma1.2p1_0370F.1_g137820 Hydrangea macrophylla HOM05D000106 ORTHO05D003154 1.4e-09 65.9 61 52.5
Lsat_1_v5_gn_5_148481 Lactuca sativa HOM05D000106 ORTHO05D003154 1.4e-09 65.9 48 60.4
Potri.009G102300 Populus trichocarpa HOM05D000106 ORTHO05D003154 1.4e-09 65.9 61 52.5
Migut.N00170 Erythranthe guttata HOM05D000106 ORTHO05D003154 1.8e-09 65.5 64 54.7
Gohir.A03G189700 Gossypium hirsutum HOM05D000106 ORTHO05D003154 2.3e-09 65.1 64 48.4
SalBow6G5956 Salvia bowleyana HOM05D000106 ORTHO05D003154 2.3e-09 65.1 52 59.6
AUR62016611 Chenopodium quinoa HOM05D000106 ORTHO05D003154 4.0e-09 64.3 59 47.5
FAN27G0907 Fragaria x ananassa HOM05D000106 ORTHO05D003154 4.0e-09 64.3 57 52.6
PSO170G1553 Papaver somniferum HOM05D000106 ORTHO05D003154 4.0e-09 64.3 48 64.6
Phvul.007G054600 Phaseolus vulgaris HOM05D000106 ORTHO05D003154 4.0e-09 64.3 42 71.4
Aqoxy2G03347 Aquilegia oxysepala HOM05D000106 ORTHO05D003154 5.2e-09 63.9 49 65.3
Gorai.005G238300 Gossypium raimondii HOM05D000106 ORTHO05D003154 5.2e-09 63.9 64 48.4
Prupe.1G155400 Prunus persica HOM05D000106 ORTHO05D003154 6.8e-09 63.5 63 57.1
MSTRG.24748 Avicennia marina HOM05D000106 ORTHO05D003154 8.9e-09 63.2 59 59.3
Duzib052G1100 Durio zibethinus HOM05D000106 ORTHO05D003154 8.9e-09 63.2 59 49.2
Phvul.003G292500 Phaseolus vulgaris HOM05D000106 ORTHO05D003154 8.9e-09 63.2 64 46.9
Nitab4.5_0000260g0110 Nicotiana tabacum HOM05D000106 ORTHO05D003154 1.2e-08 62.8 49 59.2
Thecc.02G100500 Theobroma cacao HOM05D000106 ORTHO05D003154 1.2e-08 62.8 57 52.6
CiPaw.01G163600 Carya illinoinensis HOM05D000106 ORTHO05D003154 1.5e-08 62.4 44 70.5
MBI16_g37881_MAGBIO Magnolia biondii HOM05D000106 ORTHO05D003154 1.5e-08 62.4 64 51.6
Sopen09g030540 Solanum pennellii HOM05D000106 ORTHO05D003154 1.5e-08 62.4 46 63.0
PGR142G3269 Punica granatum HOM05D000106 ORTHO05D003154 2.0e-08 62.0 55 50.9
PGSC0003DMG400031802 Solanum tuberosum HOM05D000106 ORTHO05D003154 2.0e-08 62.0 46 63.0
CDE05G0755 Ceratophyllum demersum HOM05D000106 ORTHO05D003154 2.6e-08 61.6 64 48.4
Lj4g0007024 Lotus japonicus HOM05D000106 ORTHO05D003154 2.6e-08 61.6 64 48.4
Medtr4g086250 Medicago truncatula HOM05D000106 ORTHO05D003154 2.6e-08 61.6 64 45.3
PSO017G5362 Papaver somniferum HOM05D000106 ORTHO05D003154 2.6e-08 61.6 58 53.4
Glyma.02G132800 Glycine max HOM05D000106 ORTHO05D003154 3.4e-08 61.2 64 45.3
TPR.G28488 Trifolium pratense HOM05D000106 ORTHO05D003154 3.4e-08 61.2 64 42.2
CSS0032581 Camellia sinensis var. sinensis HOM05D000106 ORTHO05D003154 5.8e-08 60.5 59 50.8
DCAR_027183 Daucus carota HOM05D000106 ORTHO05D003154 7.5e-08 60.1 50 62.0
Migut.B00345 Erythranthe guttata HOM05D000106 ORTHO05D003154 7.5e-08 60.1 64 46.9
Lalb_Chr02g0140541 Lupinus albus HOM05D000106 ORTHO05D003154 7.5e-08 60.1 41 70.7
CAN.G668.9 Capsicum annuum HOM05D000106 ORTHO05D003154 9.8e-08 59.7 46 60.9
Solyc09g075730.3 Solanum lycopersicum HOM05D000106 ORTHO05D003154 9.8e-08 59.7 64 48.4
CARHR080500 Cardamine hirsuta HOM05D000106 ORTHO05D003154 1.3e-07 59.3 48 58.3
Duzib052G0746 Durio zibethinus HOM05D000106 ORTHO05D003154 1.3e-07 59.3 66 51.5
Lalb_Chr09g0328301 Lupinus albus HOM05D000106 ORTHO05D003154 1.7e-07 58.9 56 48.2
THA.LOC104818781 Tarenaya hassleriana HOM05D000106 ORTHO05D003154 1.7e-07 58.9 64 50.0
arahy.Tifrunner.gnm1.ann1.0NLM07 Arachis hypogaea HOM05D000106 ORTHO05D003154 2.2e-07 58.5 48 56.2
MSTRG.16747 Avicennia marina HOM05D000106 ORTHO05D003154 2.9e-07 58.2 59 50.8
Haze_00927 Corylus avellana HOM05D000106 ORTHO05D003154 2.9e-07 58.2 41 70.7
COL.COLO4_32660 Corchorus olitorius HOM05D007022 ORTHO05D003154 3.7e-07 57.8 53 50.9
Glyma.07G212200 Glycine max HOM05D000106 ORTHO05D003154 3.7e-07 57.8 52 51.9
MBI17_g31752_MAGBIO Magnolia biondii HOM05D000106 ORTHO05D003154 4.9e-07 57.4 47 63.8
Cfa015616 Carpinus fangiana HOM05D000106 ORTHO05D003154 6.4e-07 57.0 41 68.3
Dinv42155 Davidia involucrata HOM05D000106 ORTHO05D003154 6.4e-07 57.0 48 54.2
arahy.Tifrunner.gnm1.ann1.S19N9I Arachis hypogaea HOM05D000106 ORTHO05D003154 8.3e-07 56.6 48 54.2
Potri.008G150200 Populus trichocarpa HOM05D000106 ORTHO05D003154 8.3e-07 56.6 44 63.6
THA.LOC104822299 Tarenaya hassleriana HOM05D000106 ORTHO05D003154 8.3e-07 56.6 43 62.8
Gohir.D10G138720 Gossypium hirsutum HOM05D000053 ORTHO05D000035 1.4e-06 55.8 59 47.5
Os05g0393100 Oryza sativa ssp. japonica HOM05D000106 ORTHO05D003154 1.4e-06 55.8 64 46.9
Psat7g124880 Pisum sativum HOM05D000106 ORTHO05D003154 1.9e-06 55.5 64 43.8
Nitab4.5_0001545g0010 Nicotiana tabacum HOM05D000106 ORTHO05D003154 2.4e-06 55.1 80 41.2
FAN24G0641 Fragaria x ananassa HOM05D000106 ORTHO05D003154 3.2e-06 54.7 57 47.4
FvH4_2g06120 Fragaria vesca HOM05D000106 ORTHO05D003154 4.1e-06 54.3 57 47.4
FAN15G1680 Fragaria x ananassa HOM05D000106 ORTHO05D003154 4.1e-06 54.3 57 47.4
SEGI_14886 Sequoiadendron giganteum HOM05D000106 ORTHO05D001887 5.4e-06 53.9 60 43.3
Gohir.D01G006900 Gossypium hirsutum HOM05D000106 ORTHO05D003154 7.0e-06 53.5 64 42.2
BcaC05g30071 Brassica carinata HOM05D000106 ORTHO05D003154 9.2e-06 53.1 39 66.7
C05p61270 Brassica napus HOM05D000106 ORTHO05D003154 9.2e-06 53.1 39 66.7
BolC5t34786H Brassica oleracea HOM05D000106 ORTHO05D003154 9.2e-06 53.1 39 66.7
ECA236G4820 Erigeron canadensis HOM05D000002 ORTHO05D000001 9.2e-06 53.1 66 39.4
Lalb_Chr16g0384711 Lupinus albus HOM05D000106 ORTHO05D003154 9.2e-06 53.1 52 44.2
Medtr5g077430 Medicago truncatula HOM05D000517 ORTHO05D000751 9.2e-06 53.1 58 48.3


User provided reference genes

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