Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.0H97XI Arachis hypogaea HOM05D004142 ORTHO05D005411 0.0e+00 1137.9 610 100.0
arahy.Tifrunner.gnm1.ann1.FRA838 Arachis hypogaea HOM05D004142 ORTHO05D005411 0.0e+00 1089.7 630 92.1
arahy.Tifrunner.gnm1.ann1.52DH7S Arachis hypogaea HOM05D004142 ORTHO05D005411 3.2e-310 1067.8 632 91.1
Glyma.14G215500 Glycine max HOM05D004142 ORTHO05D005411 2.7e-221 772.3 613 70.5
Lalb_Chr04g0251341 Lupinus albus HOM05D004142 ORTHO05D005411 4.0e-220 768.5 628 68.6
Phvul.008G235900 Phaseolus vulgaris HOM05D004142 ORTHO05D005411 2.8e-218 762.3 616 68.7
Glyma.02G245400 Glycine max HOM05D004142 ORTHO05D005411 3.7e-218 761.9 606 69.5
VMungo0647G1269 Vigna mungo HOM05D004142 ORTHO05D005411 1.0e-215 753.8 613 67.7
LjContig00141g0017492 Lotus japonicus HOM05D004142 ORTHO05D005411 8.3e-210 734.2 606 68.6
Psat2g043640 Pisum sativum HOM05D004142 ORTHO05D005411 7.0e-209 731.1 632 65.2
Medtr5g078780 Medicago truncatula HOM05D004142 ORTHO05D005411 1.2e-200 703.7 631 65.3
TPR.G8874 Trifolium pratense HOM05D004142 ORTHO05D005411 3.7e-194 682.2 629 62.3
Ca_01556_v3 Cicer arietinum L. HOM05D004142 ORTHO05D005411 1.0e-191 674.1 645 61.1
Cfa005371 Carpinus fangiana HOM05D004142 ORTHO05D005411 1.1e-188 664.1 619 62.2
QL11p056391 Quercus lobata HOM05D004142 ORTHO05D005411 3.1e-188 662.5 632 61.2
CiPaw.06G115400 Carya illinoinensis HOM05D004142 ORTHO05D005411 2.0e-187 659.8 623 62.9
Dinv14174 Davidia involucrata HOM05D004142 ORTHO05D005411 1.0e-183 647.5 633 58.3
Atru.chr3.3247 Acer truncatum HOM05D004142 ORTHO05D005411 5.6e-182 641.7 630 58.4
CANSAT25G0210 Cannabis sativa HOM05D004142 ORTHO05D005411 4.9e-178 628.6 590 58.8
FAN24G0393 Fragaria x ananassa HOM05D004142 ORTHO05D005411 1.4e-177 627.1 639 56.5
Potri.009G168100 Populus trichocarpa HOM05D004142 ORTHO05D005411 2.4e-177 626.3 638 57.4
Thecc.02G146100 Theobroma cacao HOM05D004142 ORTHO05D005411 9.2e-177 624.4 636 56.9
Eucgr.G01885 Eucalyptus grandis HOM05D004142 ORTHO05D005411 2.1e-176 623.2 634 57.4
CSS0014725 Camellia sinensis var. sinensis HOM05D004142 ORTHO05D005411 4.6e-176 622.1 634 56.3
CSS0035317 Camellia sinensis var. sinensis HOM05D004142 ORTHO05D005411 7.8e-176 621.3 642 55.5
Ciclev10028022m.g Citrus clementina HOM05D004142 ORTHO05D005411 1.3e-175 620.5 640 57.5
Prupe.8G180000 Prunus persica HOM05D004142 ORTHO05D005411 1.7e-175 620.2 637 56.4
TWI75G0433 Tripterygium wilfordii HOM05D004142 ORTHO05D005411 2.3e-175 619.8 636 57.1
Duzib052G0377 Durio zibethinus HOM05D004142 ORTHO05D005411 5.1e-175 618.6 632 57.1
PGR042G3440 Punica granatum HOM05D004142 ORTHO05D005411 5.1e-175 618.6 641 56.6
MD10G1141700 Malus domestica HOM05D004142 ORTHO05D005411 1.6e-173 613.6 637 55.6
Actinidia20577 Actinidia chinensis HOM05D004142 ORTHO05D005411 4.7e-173 612.1 639 55.2
Actinidia17993 Actinidia chinensis HOM05D004142 ORTHO05D005411 1.1e-172 610.9 639 56.3
RcHm_v2.0_Chr6g0280901 Rosa chinensis HOM05D004142 ORTHO05D005411 1.4e-172 610.5 637 55.9
Gorai.013G064000 Gossypium raimondii HOM05D004142 ORTHO05D005411 5.2e-172 608.6 615 57.6
TAR633G0693 Trochodendron aralioides HOM05D004142 ORTHO05D005411 1.5e-171 607.1 626 54.6
Gohir.A13G065000 Gossypium hirsutum HOM05D004142 ORTHO05D005411 4.4e-171 605.5 634 55.5
Gohir.D13G057300 Gossypium hirsutum HOM05D004142 ORTHO05D005411 9.9e-171 604.4 629 56.8
Rhsim11G0198100 Rhododendron simsii HOM05D004142 ORTHO05D005411 9.9e-171 604.4 627 55.8
Haze_02000 Corylus avellana HOM05D004142 ORTHO05D005411 6.4e-170 601.7 637 57.6
FAN15G2670 Fragaria x ananassa HOM05D004142 ORTHO05D005411 6.4e-170 601.7 646 55.1
Sopen10g027050 Solanum pennellii HOM05D004142 ORTHO05D005411 1.4e-169 600.5 627 55.5
Solyc10g074560.2 Solanum lycopersicum HOM05D004142 ORTHO05D005411 3.2e-169 599.4 603 56.9
Manes.04G066800 Manihot esculenta HOM05D004142 ORTHO05D005411 7.1e-169 598.2 622 55.0
Lj5C171T17 Lonicera japonica HOM05D004142 ORTHO05D005411 1.1e-166 590.9 685 51.7
CsaV3_7G001920 Cucumis sativus L. HOM05D004142 ORTHO05D005411 2.5e-166 589.7 601 56.4
MELO3C013248.2 Cucumis melo HOM05D004142 ORTHO05D005411 9.6e-166 587.8 613 55.6
CAN.G765.24 Capsicum annuum HOM05D004142 ORTHO05D005411 1.6e-165 587.0 633 54.7
Sabra09G0130600 Salix brachista HOM05D004142 ORTHO05D005852 2.8e-165 586.3 626 55.8
Peaxi162Scf01986g00004 Petunia axillaris HOM05D004142 ORTHO05D005411 5.3e-164 582.0 624 55.4
TWI31G1182 Tripterygium wilfordii HOM05D004142 ORTHO05D005411 2.0e-163 580.1 629 54.7
Sed0023655 Sechium edule HOM05D004142 ORTHO05D005411 2.6e-163 579.7 624 55.0
EL10Ac9g21530 Beta vulgaris HOM05D004142 ORTHO05D005411 3.4e-163 579.3 619 54.0
CARHR293590 Cardamine hirsuta HOM05D004142 ORTHO05D005411 1.1e-161 574.3 601 55.2
DCAR_005486 Daucus carota HOM05D004142 ORTHO05D005411 7.1e-161 571.6 640 53.4
Cc09_g10830 Coffea canephora HOM05D004142 ORTHO05D005411 9.3e-161 571.2 621 55.1
Ah.05g178840 Amaranthus hybridus HOM05D004142 ORTHO05D005411 7.9e-160 568.2 595 55.0
Aa31LG8G14620 Aethionema arabicum HOM05D004142 ORTHO05D005411 5.1e-159 565.5 613 53.0
Nn5g31006 Nelumbo nucifera HOM05D004142 ORTHO05D005411 4.3e-158 562.4 606 54.0
CSS0002990 Camellia sinensis var. sinensis HOM05D004142 ORTHO05D005411 1.6e-157 560.5 664 50.6
MSTRG.27614 Avicennia marina HOM05D004142 ORTHO05D005411 2.1e-157 560.1 624 53.0
Hund06363 Selenicereus undatus HOM05D004142 ORTHO05D005411 4.8e-157 558.9 599 53.4
SGA_v2.0_scaffold98G29302 Striga asiatica HOM05D004142 ORTHO05D005411 2.4e-156 556.6 594 53.7
vmacro02340 Vaccinium macrocarpon HOM05D004142 ORTHO05D005411 5.3e-156 555.4 630 52.2
Thhalv10022610m.g Eutrema salsugineum HOM05D004142 ORTHO05D005411 1.5e-155 553.9 617 52.8
AL3G50110 Arabidopsis lyrata HOM05D004142 ORTHO05D005411 2.6e-155 553.1 601 53.4
THA.LOC104819692 Tarenaya hassleriana HOM05D004142 ORTHO05D005411 4.5e-155 552.4 636 53.3
A07p03800 Brassica napus HOM05D004142 ORTHO05D005411 2.2e-154 550.1 607 54.5
COL.COLO4_34310 Corchorus olitorius HOM05D004142 ORTHO05D005411 2.2e-154 550.1 636 52.7
BcaB07g31738 Brassica carinata HOM05D004142 ORTHO05D005411 3.8e-154 549.3 602 53.3
Sp3g30590 Schrenkiella parvula HOM05D004142 ORTHO05D005411 3.8e-154 549.3 614 52.3
C09p13280 Brassica napus HOM05D004142 ORTHO05D005411 9.3e-153 544.7 628 52.7
BolC9t54221H Brassica oleracea HOM05D004142 ORTHO05D005411 9.3e-153 544.7 628 52.7
BraA07t28174Z Brassica rapa HOM05D004142 ORTHO05D005411 9.3e-153 544.7 611 54.0
AT2G17250 Arabidopsis thaliana HOM05D004142 ORTHO05D005411 3.5e-152 542.7 598 53.0
BcaB03g16472 Brassica carinata HOM05D004142 ORTHO05D005411 3.5e-152 542.7 606 52.3
BcaC04g22983 Brassica carinata HOM05D004142 ORTHO05D005411 1.8e-151 540.4 619 53.0
CDE05G3311 Ceratophyllum demersum HOM05D004142 ORTHO05D005411 6.7e-151 538.5 624 50.8
ClCG02G003400 Citrullus lanatus HOM05D004142 ORTHO05D005411 6.7e-151 538.5 622 52.9
HanXRQChr16g0515111 Helianthus annuus HOM05D004142 ORTHO05D005411 1.1e-150 537.7 596 53.2
Carub.0003s3119 Capsella rubella HOM05D004142 ORTHO05D005411 1.9e-150 537.0 601 53.4
SalBow5G4664 Salvia bowleyana HOM05D004142 ORTHO05D005411 3.3e-150 536.2 608 53.9
HanXRQChr09g0239911 Helianthus annuus HOM05D004142 ORTHO05D005411 4.3e-150 535.8 586 53.4
SalBow5G1400 Salvia bowleyana HOM05D004142 ORTHO05D005411 5.6e-150 535.4 608 53.8
FvH4_2g16780 Fragaria vesca HOM05D004142 ORTHO05D005411 1.3e-149 534.3 505 59.0
A09p11250 Brassica napus HOM05D004142 ORTHO05D005411 1.6e-149 533.9 607 52.9
BraA09t36766Z Brassica rapa HOM05D004142 ORTHO05D005411 2.8e-149 533.1 607 53.5
Aqoxy6G01597 Aquilegia oxysepala HOM05D004142 ORTHO05D005411 1.1e-148 531.2 622 51.1
Migut.B01359 Erythranthe guttata HOM05D004142 ORTHO05D005411 4.5e-147 525.8 630 50.2
ECA233G5375 Erigeron canadensis HOM05D004142 ORTHO05D005411 1.7e-146 523.9 597 51.8
Sc08g0002210 Simmondsia chinensis HOM05D004142 ORTHO05D005411 1.4e-145 520.8 598 51.2
Atru.chr5.3556 Acer truncatum HOM05D004142 ORTHO05D005411 3.9e-143 512.7 539 56.8
Lsat_1_v5_gn_5_183861 Lactuca sativa HOM05D004142 ORTHO05D005411 3.3e-142 509.6 583 52.1
Nitab4.5_0005657g0020 Nicotiana tabacum HOM05D004142 ORTHO05D005411 4.8e-141 505.8 638 49.5
Zm00001eb428130 Zea mays HOM05D004142 ORTHO05D005411 1.4e-140 504.2 618 51.1
Os04g0585300 Oryza sativa ssp. japonica HOM05D004142 ORTHO05D005411 3.1e-140 503.1 603 50.9
PSO541G0415 Papaver somniferum HOM05D004142 ORTHO05D005411 6.9e-140 501.9 602 50.2
PSO675G0945 Papaver somniferum HOM05D004142 ORTHO05D005411 2.0e-139 500.4 602 50.0
CSS0034003 Camellia sinensis var. sinensis HOM05D004142 ORTHO05D005411 5.8e-139 498.8 635 49.3
CAN.G397.37 Capsicum annuum HOM05D004142 ORTHO05D005411 3.2e-137 493.0 514 56.8
ATR0807G091 Amborella trichopoda HOM05D004142 ORTHO05D005411 5.1e-135 485.7 642 47.5
Nitab4.5_0001700g0140 Nicotiana tabacum HOM05D004142 ORTHO05D005411 2.2e-133 480.3 620 50.5
BcaC06g36246 Brassica carinata HOM05D004142 ORTHO05D005411 2.8e-133 479.9 595 51.3
BolC7t41018H Brassica oleracea HOM05D004142 ORTHO05D005411 2.5e-129 466.8 569 52.0
AUR62013175 Chenopodium quinoa HOM05D004142 ORTHO05D005411 7.2e-129 465.3 600 50.3
AUR62010174 Chenopodium quinoa HOM05D004142 ORTHO05D005411 2.3e-127 460.3 478 54.2
C07p06050 Brassica napus HOM05D004142 ORTHO05D005411 1.5e-126 457.6 580 50.7
TAR381G0855 Trochodendron aralioides HOM05D004142 ORTHO05D005411 4.8e-125 452.6 474 55.1
MD05G1138800 Malus domestica HOM05D004142 ORTHO05D005411 2.6e-118 430.3 620 46.5
Mapoly0043s0054 Marchantia polymorpha HOM05D004142 ORTHO05D005411 1.9e-105 387.5 612 41.2
AagrBONN_evm.TU.Sc2ySwM_228.5327 Anthoceros agrestis HOM05D004142 ORTHO05D005411 9.4e-97 358.6 631 39.5
unitig_578.g16758 Utricularia gibba HOM05D004142 ORTHO05D005411 1.2e-96 358.2 600 41.8
Pp3c9_12610 Physcomitrium patens HOM05D004142 ORTHO05D005411 3.6e-96 356.7 626 39.5
BcaB07g31740 Brassica carinata HOM05D004142 ORTHO05D005411 6.3e-93 345.9 507 46.2
Oeu037462.1 Olea europaea HOM05D004142 ORTHO05D005411 1.1e-84 318.5 385 49.4
Cpa.g.sc60.17 Carica papaya HOM05D004142 ORTHO05D005411 4.0e-79 300.1 380 50.5
SHI03795 Sapria himalayana HOM05D004142 ORTHO05D005411 5.8e-78 296.2 275 58.5
SMO338G0043 Selaginella moellendorffii HOM05D004142 ORTHO05D005411 1.4e-76 291.6 512 39.8
MD11G1014400 Malus domestica HOM05D004142 ORTHO05D005411 1.4e-71 275.0 339 49.9
CBR_g44269 Chara braunii HOM05D004142 ORTHO05D005411 2.3e-58 231.1 380 41.8
Ca_05793_v3 Cicer arietinum L. HOM05D004142 ORTHO05D005411 2.5e-57 227.6 199 62.8
HPP92_025664 Vanilla planifolia HOM05D004142 ORTHO05D005411 4.3e-57 226.9 293 48.5
ECA246G3488 Erigeron canadensis HOM05D004142 ORTHO05D005411 5.4e-52 209.9 354 42.4
Oeu037461.1 Olea europaea HOM05D004142 ORTHO05D005411 1.5e-49 201.8 118 82.2
Cre01.g068377 Chlamydomonas reinhardtii HOM05D004142 ORTHO05D005411 1.3e-48 198.7 326 38.7
PRCOL_00005396 Prasinoderma coloniale HOM05D004142 ORTHO05D005411 1.1e-47 195.7 312 39.4
Eucgr.H04975 Eucalyptus grandis HOM05D004142 ORTHO05D005411 2.6e-46 191.0 234 49.1
GSVIVG01004114001 Vitis vinifera HOM05D004142 ORTHO05D005411 5.8e-46 189.9 199 53.3
Cpa.g.sc60.19 Carica papaya HOM05D004142 ORTHO05D005411 3.5e-43 180.6 212 49.1
SEGI_26341 Sequoiadendron giganteum HOM05D004142 ORTHO05D005411 9.9e-38 162.5 148 59.5
MCO08G220 Micromonas commoda HOM05D004142 ORTHO05D005411 3.8e-37 160.6 156 50.6
Zm00001eb152690 Zea mays HOM05D004142 ORTHO05D000502 9.3e-36 156.0 112 70.5
SHI03796 Sapria himalayana HOM05D004142 ORTHO05D005411 2.3e-34 151.4 200 40.5
GSVIVG01004442001 Vitis vinifera HOM05D004142 ORTHO05D005411 3.1e-31 141.0 158 50.0
AagrBONN_evm.TU.Sc2ySwM_228.5300 Anthoceros agrestis HOM05D004142 ORTHO05D005411 3.4e-30 137.5 253 35.6
TAR318G0001 Trochodendron aralioides HOM05D004142 ORTHO05D005411 3.8e-29 134.0 169 43.8
Cfa024410 Carpinus fangiana HOM05D004142 ORTHO05D005411 1.1e-28 132.5 482 27.6
HPP92_025663 Vanilla planifolia HOM05D004142 ORTHO05D005411 4.2e-28 130.6 189 42.9
FAN27G1246 Fragaria x ananassa HOM05D004142 ORTHO05D005411 7.1e-28 129.8 124 59.7
Zm00001eb177550 Zea mays HOM05D004142 ORTHO05D005411 4.3e-25 120.6 87 71.3
Zm00001eb282240 Zea mays HOM05D004142 ORTHO05D005411 9.6e-25 119.4 87 71.3
TPR.G40409 Trifolium pratense HOM05D004142 ORTHO05D005411 2.8e-24 117.9 65 84.6
Hma1.2p1_0796F.1_g219330 Hydrangea macrophylla HOM05D004142 ORTHO05D005411 4.8e-24 117.1 130 54.6
Hma1.2p1_0151F.1_g067370 Hydrangea macrophylla HOM05D004142 ORTHO05D005411 8.2e-24 116.3 113 60.2
Lsat_1_v5_gn_5_64620 Lactuca sativa HOM05D004142 ORTHO05D005411 5.9e-22 110.2 109 58.7
BcaB07g31739 Brassica carinata HOM05D004142 ORTHO05D005411 1.0e-21 109.4 106 50.9
Zm00001eb112060 Zea mays HOM05D004142 ORTHO05D005983 3.2e-20 104.4 74 73.0
AagrBONN_evm.TU.Sc2ySwM_228.5299 Anthoceros agrestis HOM05D004142 ORTHO05D005411 7.2e-20 103.2 171 44.4
Eucgr.H04983 Eucalyptus grandis HOM05D004142 ORTHO05D005411 7.2e-20 103.2 70 71.4
CSS0025136 Camellia sinensis var. sinensis HOM05D004142 ORTHO05D005411 4.6e-19 100.5 172 36.6
Psat3g160080 Pisum sativum HOM05D004142 ORTHO05D005411 1.0e-18 99.4 130 46.9
Medtr5g078810 Medicago truncatula HOM05D004142 ORTHO05D005411 2.3e-18 98.2 69 72.5
SEGI_03267 Sequoiadendron giganteum HOM05D004142 ORTHO05D005411 2.5e-17 94.7 89 56.2
SEGI_12604 Sequoiadendron giganteum HOM05D004142 ORTHO05D005411 3.3e-17 94.4 83 60.2
BcaB07g31742 Brassica carinata HOM05D004142 ORTHO05D005411 6.9e-15 86.7 176 42.6
SEGI_29991 Sequoiadendron giganteum HOM05D004142 ORTHO05D031210 8.5e-13 79.7 179 29.6
TPR.G18886 Trifolium pratense HOM05D000005 ORTHO05D000012 1.1e-12 79.3 76 56.6
Lsat_1_v5_gn_5_140320 Lactuca sativa HOM05D004142 ORTHO05D036439 1.6e-11 75.5 89 49.4
Zm00001eb028530 Zea mays HOM05D004142 ORTHO05D000502 1.6e-11 75.5 48 77.1
BcaC04g22984 Brassica carinata HOM05D004142 ORTHO05D005411 3.6e-11 74.3 68 60.3
MD11G1014300 Malus domestica HOM05D004142 ORTHO05D005411 3.6e-11 74.3 68 57.4
RcHm_v2.0_Chr1g0336401 Rosa chinensis HOM05D004142 ORTHO05D005411 3.0e-10 71.2 49 67.3
RcHm_v2.0_Chr7g0239681 Rosa chinensis HOM05D004142 ORTHO05D005411 1.1e-09 69.3 48 68.8
TPR.G21918 Trifolium pratense HOM05D004142 ORTHO05D410701 7.4e-09 66.6 62 66.1
Oeu003432.1 Olea europaea HOM05D004142 ORTHO05D005411 9.1e-07 59.7 54 55.6


User provided reference genes

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