Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.0H4UJT Arachis hypogaea HOM05D007902 ORTHO05D009839 1.3e-193 679.5 338 100.0
arahy.Tifrunner.gnm1.ann1.C7E7HV Arachis hypogaea HOM05D007902 ORTHO05D009839 8.6e-92 341.3 170 99.4
Ca_06023_v3 Cicer arietinum L. HOM05D007902 ORTHO05D009839 5.7e-43 179.1 153 56.9
vmacro09979 Vaccinium macrocarpon HOM05D007902 ORTHO05D009839 2.6e-32 143.7 156 48.7
TAR623G0347 Trochodendron aralioides HOM05D007902 ORTHO05D009839 3.5e-32 143.3 148 50.0
Dinv21823 Davidia involucrata HOM05D007902 ORTHO05D009839 4.5e-32 142.9 154 48.1
Psat1g014880 Pisum sativum HOM05D007902 ORTHO05D009839 1.1e-30 138.3 158 46.8
Lsat_1_v5_gn_9_59200 Lactuca sativa HOM05D007902 ORTHO05D009839 9.4e-30 135.2 161 49.1
Hma1.2p1_0292F.1_g115760 Hydrangea macrophylla HOM05D007902 ORTHO05D009839 2.1e-29 134.0 148 46.6
QL08p064506 Quercus lobata HOM05D007902 ORTHO05D009839 2.7e-29 133.7 150 48.7
CAN.G591.5 Capsicum annuum HOM05D007902 ORTHO05D009839 3.6e-29 133.3 174 44.8
LjContig00357g0001230 Lotus japonicus HOM05D007902 ORTHO05D009839 3.6e-29 133.3 153 49.7
CiPaw.01G304600 Carya illinoinensis HOM05D007902 ORTHO05D009839 6.1e-29 132.5 159 45.3
Actinidia07804 Actinidia chinensis HOM05D007902 ORTHO05D009839 8.0e-29 132.1 170 45.9
Cpa.g.sc19.89 Carica papaya HOM05D007902 ORTHO05D009839 8.0e-29 132.1 157 43.9
HanXRQChr09g0251491 Helianthus annuus HOM05D007902 ORTHO05D009839 8.0e-29 132.1 154 45.5
Eucgr.G03123 Eucalyptus grandis HOM05D007902 ORTHO05D009839 1.8e-28 131.0 149 49.0
CANSAT56G3130 Cannabis sativa HOM05D007902 ORTHO05D009839 1.5e-27 127.9 159 47.2
Haze_17334 Corylus avellana HOM05D007902 ORTHO05D009839 2.6e-27 127.1 159 44.7
Migut.F00588 Erythranthe guttata HOM05D007902 ORTHO05D009839 3.3e-27 126.7 148 45.3
Potri.019G049100 Populus trichocarpa HOM05D007902 ORTHO05D009839 3.3e-27 126.7 150 44.0
Gohir.D13G005400 Gossypium hirsutum HOM05D007902 ORTHO05D009839 4.4e-27 126.3 151 47.7
Gorai.013G006100 Gossypium raimondii HOM05D007902 ORTHO05D009839 4.4e-27 126.3 151 47.7
Medtr0191s0020 Medicago truncatula HOM05D007902 ORTHO05D009839 4.4e-27 126.3 155 46.5
COL.COLO4_26867 Corchorus olitorius HOM05D005928 ORTHO05D007500 5.7e-27 125.9 163 46.6
Sabra19G0058600 Salix brachista HOM05D007902 ORTHO05D009839 7.5e-27 125.6 150 43.3
Ciclev10032767m.g Citrus clementina HOM05D007902 ORTHO05D009839 9.7e-27 125.2 151 45.0
MD01G1163300 Malus domestica HOM05D007902 ORTHO05D009839 1.3e-26 124.8 167 42.5
Gohir.A13G005700 Gossypium hirsutum HOM05D007902 ORTHO05D009839 1.7e-26 124.4 151 47.7
EL10Ac2g04265 Beta vulgaris HOM05D007902 ORTHO05D009839 4.8e-26 122.9 163 44.8
Cc02_g05590 Coffea canephora HOM05D007902 ORTHO05D009839 8.2e-26 122.1 153 44.4
Manes.07G138200 Manihot esculenta HOM05D007902 ORTHO05D009839 8.2e-26 122.1 150 45.3
Prupe.2G261300 Prunus persica HOM05D007902 ORTHO05D009839 8.2e-26 122.1 154 43.5
FAN01G1070 Fragaria x ananassa HOM05D001122 ORTHO05D001877 1.1e-25 121.7 168 42.3
Peaxi162Scf00464g00015 Petunia axillaris HOM05D007902 ORTHO05D009839 1.4e-25 121.3 157 43.3
Sopen06g015820 Solanum pennellii HOM05D007902 ORTHO05D009839 1.8e-25 120.9 149 45.6
Aqoxy4G02352 Aquilegia oxysepala HOM05D007902 ORTHO05D009839 2.4e-25 120.6 172 41.9
FAN03G2841 Fragaria x ananassa HOM05D001122 ORTHO05D001877 2.4e-25 120.6 150 44.7
FvH4_7g25601 Fragaria vesca HOM05D007902 ORTHO05D009839 4.1e-25 119.8 143 46.2
RcHm_v2.0_Chr1g0371741 Rosa chinensis HOM05D007902 ORTHO05D009839 1.6e-24 117.9 166 42.8
TWI53G0910 Tripterygium wilfordii HOM05D007902 ORTHO05D009839 4.5e-24 116.3 130 47.7
CARHR207920 Cardamine hirsuta HOM05D007902 ORTHO05D009839 1.3e-23 114.8 154 46.1
C09p71380 Brassica napus HOM05D007902 ORTHO05D009839 1.7e-23 114.4 159 40.9
AT5G05330 Arabidopsis thaliana HOM05D007902 ORTHO05D009839 2.2e-23 114.0 157 42.7
MD07G1231300 Malus domestica HOM05D007902 ORTHO05D009839 2.2e-23 114.0 165 41.2
BcaC06g32241 Brassica carinata HOM05D007902 ORTHO05D009839 3.8e-23 113.2 159 39.6
Thhalv10014946m.g Eutrema salsugineum HOM05D007902 ORTHO05D009839 5.0e-23 112.8 143 45.5
Nn2g10362 Nelumbo nucifera HOM05D007902 ORTHO05D009839 5.0e-23 112.8 155 40.6
BraA10t45132Z Brassica rapa HOM05D007902 ORTHO05D009839 8.5e-23 112.1 158 40.5
BolC9t59901H Brassica oleracea HOM05D007902 ORTHO05D009839 1.5e-22 111.3 158 39.2
AL6G15200 Arabidopsis lyrata HOM05D007902 ORTHO05D009839 3.2e-22 110.2 151 43.7
Carub.0006s0425 Capsella rubella HOM05D007902 ORTHO05D009839 4.2e-22 109.8 151 44.4
SalBow5G2004 Salvia bowleyana HOM05D007902 ORTHO05D009839 5.5e-22 109.4 152 44.7
Sp6g37500 Schrenkiella parvula HOM05D007902 ORTHO05D009839 5.5e-22 109.4 149 41.6
BcaC03g13156 Brassica carinata HOM05D007902 ORTHO05D009839 1.6e-21 107.8 143 44.1
PSO017G6410 Papaver somniferum HOM05D007902 ORTHO05D009839 2.7e-21 107.1 170 40.0
FAN06G1561 Fragaria x ananassa HOM05D007902 ORTHO05D009839 6.1e-21 105.9 168 41.7
PGR142G4074 Punica granatum HOM05D007902 ORTHO05D009839 8.0e-21 105.5 178 38.8
Atru.chr12.150 Acer truncatum HOM05D005928 ORTHO05D007500 1.8e-20 104.4 169 36.1
BcaB05g21722 Brassica carinata HOM05D007902 ORTHO05D009839 1.8e-20 104.4 141 42.6
Thecc.10G175100 Theobroma cacao HOM05D007902 ORTHO05D009839 4.0e-20 103.2 109 52.3
C02p02280 Brassica napus HOM05D007902 ORTHO05D009839 5.2e-20 102.8 143 43.4
BraA02t04842Z Brassica rapa HOM05D007902 ORTHO05D009839 5.2e-20 102.8 143 42.7
PGSC0003DMG400029078 Solanum tuberosum HOM05D007902 ORTHO05D009839 2.0e-19 100.9 119 44.5
Hund13474 Selenicereus undatus HOM05D007902 ORTHO05D009839 3.4e-19 100.1 170 37.1
Rhsim09G0183800 Rhododendron simsii HOM05D007902 ORTHO05D009839 8.3e-18 95.5 193 34.7
SGA_v2.0_scaffold60G20910 Striga asiatica HOM05D005928 ORTHO05D007500 1.2e-16 91.7 172 34.3
TAR623G0840 Trochodendron aralioides HOM05D007902 ORTHO05D009839 3.5e-16 90.1 95 53.7
unitig_52.g16781 Utricularia gibba HOM05D007902 ORTHO05D009839 3.5e-16 90.1 125 40.8
PSO407G0011 Papaver somniferum HOM05D007902 ORTHO05D009839 5.9e-16 89.4 177 36.2
Nitab4.5_0002713g0030 Nicotiana tabacum HOM05D007902 ORTHO05D009839 1.1e-14 85.1 151 37.1
Lj1C1068G17 Lonicera japonica HOM05D004500 ORTHO05D009839 1.5e-14 84.7 141 35.5
BolC2t06195H Brassica oleracea HOM05D007902 ORTHO05D009839 2.5e-14 84.0 153 35.3
Lalb_Chr17g0347071 Lupinus albus HOM05D007902 ORTHO05D009839 7.2e-14 82.4 81 48.1
Nitab4.5_0000263g0270 Nicotiana tabacum HOM05D007902 ORTHO05D009839 1.6e-13 81.3 151 35.1
Sc10g0002880 Simmondsia chinensis HOM05D007902 ORTHO05D009839 3.0e-12 77.0 81 54.3
Cc11_g04510 Coffea canephora HOM05D000727 ORTHO05D000541 6.8e-12 75.9 162 32.1
CDE07G0481 Ceratophyllum demersum HOM05D007902 ORTHO05D009839 1.2e-11 75.1 127 36.2
ATR0124G023 Amborella trichopoda HOM05D000727 ORTHO05D000541 5.7e-11 72.8 196 29.1
Sopen04g004000 Solanum pennellii HOM05D000727 ORTHO05D000541 7.5e-11 72.4 205 32.2
Actinidia04069 Actinidia chinensis HOM05D000727 ORTHO05D000541 1.3e-10 71.6 189 31.2
Oeu054429.1 Olea europaea HOM05D007902 ORTHO05D009839 1.3e-10 71.6 122 34.4
RhsimUnG0102400 Rhododendron simsii HOM05D000727 ORTHO05D000541 1.7e-10 71.2 195 30.8
CDE04G2894 Ceratophyllum demersum HOM05D004203 ORTHO05D004830 2.8e-10 70.5 138 34.1
MBI03_g13448_MAGBIO Magnolia biondii HOM05D000727 ORTHO05D000541 2.8e-10 70.5 169 31.4
PGR044G1367 Punica granatum HOM05D000727 ORTHO05D000541 3.7e-10 70.1 182 30.2
THA.LOC104818386 Tarenaya hassleriana HOM05D000727 ORTHO05D000541 3.7e-10 70.1 180 31.7
SEGI_37508 Sequoiadendron giganteum HOM05D000727 ORTHO05D000541 4.9e-10 69.7 184 29.3
Duzib132G0609 Durio zibethinus HOM05D000727 ORTHO05D000541 6.3e-10 69.3 181 31.5
CAN.G419.9 Capsicum annuum HOM05D000727 ORTHO05D000541 1.4e-09 68.2 178 31.5
COL.COLO4_08802 Corchorus olitorius HOM05D000576 ORTHO05D000368 1.4e-09 68.2 58 62.1
ECA246G0005 Erigeron canadensis HOM05D000727 ORTHO05D000541 1.4e-09 68.2 208 30.8
Prupe.1G350700 Prunus persica HOM05D000727 ORTHO05D000541 1.4e-09 68.2 175 33.1
Nitab4.5_0002707g0040 Nicotiana tabacum HOM05D000727 ORTHO05D000541 1.8e-09 67.8 183 31.1
Solyc04g008820.3 Solanum lycopersicum HOM05D000727 ORTHO05D000541 1.8e-09 67.8 186 31.7
Thhalv10004817m.g Eutrema salsugineum HOM05D000727 ORTHO05D000541 2.4e-09 67.4 213 29.6
Nn3g18557 Nelumbo nucifera HOM05D000727 ORTHO05D000541 2.4e-09 67.4 192 31.8
TAR622G0466 Trochodendron aralioides HOM05D000727 ORTHO05D000541 2.4e-09 67.4 167 31.1
HPP92_014761 Vanilla planifolia HOM05D000727 ORTHO05D000541 2.4e-09 67.4 164 32.3
PGSC0003DMG400025304 Solanum tuberosum HOM05D000727 ORTHO05D000541 3.1e-09 67.0 176 31.8
Dinv02932 Davidia involucrata HOM05D000727 ORTHO05D000541 4.1e-09 66.6 192 28.1
GSVIVG01034361001 Vitis vinifera HOM05D000727 ORTHO05D000541 4.1e-09 66.6 204 29.9
Atru.chr11.63 Acer truncatum HOM05D000727 ORTHO05D000541 7.0e-09 65.9 187 29.9
CSS0018830 Camellia sinensis var. sinensis HOM05D000727 ORTHO05D000541 9.2e-09 65.5 190 27.9
COL.COLO4_33133 Corchorus olitorius HOM05D000727 ORTHO05D000541 9.2e-09 65.5 178 31.5
Duzib248G1122 Durio zibethinus HOM05D000727 ORTHO05D000541 1.2e-08 65.1 187 29.9
MD13G1001900 Malus domestica HOM05D000727 ORTHO05D000541 1.2e-08 65.1 199 28.1
Thecc.02G153200 Theobroma cacao HOM05D000727 ORTHO05D000541 1.2e-08 65.1 189 30.7
HanXRQChr17g0540661 Helianthus annuus HOM05D000727 ORTHO05D000541 1.6e-08 64.7 203 31.0
PSO206G0034 Papaver somniferum HOM05D000727 ORTHO05D000541 1.6e-08 64.7 154 30.5
PSO339G3557 Papaver somniferum HOM05D000727 ORTHO05D000541 1.6e-08 64.7 154 30.5
BcaNung03729 Brassica carinata HOM05D000727 ORTHO05D000541 2.0e-08 64.3 157 32.5
CsaV3_5G021890 Cucumis sativus L. HOM05D000727 ORTHO05D000541 2.0e-08 64.3 182 28.0
RcHm_v2.0_Chr4g0447101 Rosa chinensis HOM05D000727 ORTHO05D000541 2.0e-08 64.3 205 29.3
SEGI_07762 Sequoiadendron giganteum HOM05D052445 ORTHO05D000541 2.0e-08 64.3 181 30.4
Aa31LG11G2850 Aethionema arabicum HOM05D000727 ORTHO05D000541 2.7e-08 63.9 191 30.4
FAN07G1889 Fragaria x ananassa HOM05D000727 ORTHO05D000541 4.5e-08 63.2 167 29.9
Os08g0101100 Oryza sativa ssp. japonica HOM05D000727 ORTHO05D000541 7.8e-08 62.4 157 30.6
BcaB04g19869 Brassica carinata HOM05D000727 ORTHO05D000541 1.0e-07 62.0 178 29.8
Os03g0300801 Oryza sativa ssp. japonica HOM05D011201 ORTHO05D013558 1.0e-07 62.0 82 40.2
AUR62017747 Chenopodium quinoa HOM05D000727 ORTHO05D000541 1.3e-07 61.6 197 26.9
FAN17G1781 Fragaria x ananassa HOM05D000727 ORTHO05D000541 1.3e-07 61.6 167 29.3
Aqoxy3G04324 Aquilegia oxysepala HOM05D000727 ORTHO05D000541 1.7e-07 61.2 157 31.2
DCAR_030351 Daucus carota HOM05D000727 ORTHO05D000541 1.7e-07 61.2 170 31.2
Sp2g23750 Schrenkiella parvula HOM05D000727 ORTHO05D000541 1.7e-07 61.2 160 30.6
Sed0009333 Sechium edule HOM05D000727 ORTHO05D000541 1.7e-07 61.2 185 27.6
SGA_v2.0_scaffold127G33972 Striga asiatica HOM05D000727 ORTHO05D000541 1.7e-07 61.2 188 30.9
Sc25g0001400 Simmondsia chinensis HOM05D000727 ORTHO05D000541 2.3e-07 60.8 187 29.4
BcaC04g23495 Brassica carinata HOM05D000727 ORTHO05D000541 2.9e-07 60.5 169 29.0
C09p07710 Brassica napus HOM05D000727 ORTHO05D000541 2.9e-07 60.5 169 29.0
BolC9t53688H Brassica oleracea HOM05D000727 ORTHO05D000541 2.9e-07 60.5 170 29.4
BraA02t09046Z Brassica rapa HOM05D000727 ORTHO05D000541 2.9e-07 60.5 211 28.0
AUR62032906 Chenopodium quinoa HOM05D000727 ORTHO05D000541 2.9e-07 60.5 197 27.4
Ciclev10016587m.g Citrus clementina HOM05D000727 ORTHO05D000541 2.9e-07 60.5 204 26.5
Hund09512 Selenicereus undatus HOM05D000727 ORTHO05D000541 2.9e-07 60.5 192 30.2
TWI74G1375 Tripterygium wilfordii HOM05D000727 ORTHO05D000541 2.9e-07 60.5 175 27.4
TWI53G1801 Tripterygium wilfordii HOM05D000727 ORTHO05D000541 3.8e-07 60.1 180 29.4
Carub.0006s2120 Capsella rubella HOM05D000727 ORTHO05D000541 5.0e-07 59.7 194 27.3
Gorai.008G147700 Gossypium raimondii HOM05D000727 ORTHO05D000541 6.6e-07 59.3 192 29.2
A09p06950 Brassica napus HOM05D000727 ORTHO05D000541 8.6e-07 58.9 164 30.5
BraA09t36343Z Brassica rapa HOM05D000727 ORTHO05D000541 8.6e-07 58.9 164 30.5
QL01p000468 Quercus lobata HOM05D000727 ORTHO05D000541 8.6e-07 58.9 185 29.2
QL01p000554 Quercus lobata HOM05D000727 ORTHO05D000541 8.6e-07 58.9 185 29.2
Cpa.g.sc247.1 Carica papaya HOM05D000727 ORTHO05D000541 1.1e-06 58.5 187 28.9
MSTRG.13668 Avicennia marina HOM05D000727 ORTHO05D000541 1.5e-06 58.2 200 26.0
TPR.G4017 Trifolium pratense HOM05D000727 ORTHO05D000541 1.5e-06 58.2 176 26.1
FAN22G0998 Fragaria x ananassa HOM05D011201 ORTHO05D013558 1.9e-06 57.8 79 38.0
Gohir.A12G133000 Gossypium hirsutum HOM05D000727 ORTHO05D000541 1.9e-06 57.8 194 28.9
Zm00001eb396500 Zea mays HOM05D011201 ORTHO05D013558 1.9e-06 57.8 72 38.9
FvH4_4g37280 Fragaria vesca HOM05D000727 ORTHO05D000541 2.5e-06 57.4 185 29.2
Gohir.D12G136500 Gossypium hirsutum HOM05D000727 ORTHO05D000541 2.5e-06 57.4 198 28.3
Lalb_Chr02g0144141 Lupinus albus HOM05D000727 ORTHO05D000541 2.5e-06 57.4 184 28.3
Cfa018677 Carpinus fangiana HOM05D000727 ORTHO05D000541 3.3e-06 57.0 201 26.9
FAN12G0588 Fragaria x ananassa HOM05D011201 ORTHO05D013558 3.3e-06 57.0 59 45.8
Haze_17405 Corylus avellana HOM05D000727 ORTHO05D000541 4.3e-06 56.6 191 27.2
Hma1.2p1_0513F.1_g169510 Hydrangea macrophylla HOM05D000727 ORTHO05D000541 4.3e-06 56.6 201 26.9
A02p40980 Brassica napus HOM05D000727 ORTHO05D000541 7.3e-06 55.8 182 27.5
BolC2t12139H Brassica oleracea HOM05D000727 ORTHO05D000541 7.3e-06 55.8 175 28.0
Eucgr.J00336 Eucalyptus grandis HOM05D000727 ORTHO05D000541 7.3e-06 55.8 206 27.2
FAN07G2636 Fragaria x ananassa HOM05D011201 ORTHO05D013558 7.3e-06 55.8 95 38.9
Lalb_Chr06g0164361 Lupinus albus HOM05D000727 ORTHO05D000541 9.5e-06 55.5 133 30.8
Sabra07G0000800 Salix brachista HOM05D000727 ORTHO05D000541 9.5e-06 55.5 171 29.2


User provided reference genes

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