Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.0GY0RD Arachis hypogaea HOM05D006317 ORTHO05D007852 3.5e-72 275.0 154 100.0
arahy.Tifrunner.gnm1.ann1.ID1H8K Arachis hypogaea HOM05D006317 ORTHO05D007852 1.3e-71 273.1 154 99.4
Glyma.04G246100 Glycine max HOM05D006317 ORTHO05D007852 2.0e-51 206.1 128 87.5
Glyma.06G116700 Glycine max HOM05D006317 ORTHO05D007852 2.2e-50 202.6 128 86.7
Phvul.009G129100 Phaseolus vulgaris HOM05D006317 ORTHO05D007852 4.9e-50 201.4 128 85.9
VMungo1309G0699 Vigna mungo HOM05D006317 ORTHO05D007852 3.2e-49 198.7 128 85.9
Medtr3g088525 Medicago truncatula HOM05D006317 ORTHO05D007852 1.2e-48 196.8 128 84.4
Psat5g085080 Pisum sativum HOM05D006317 ORTHO05D007852 1.0e-47 193.7 128 82.8
Lalb_Chr23g0271161 Lupinus albus HOM05D006317 ORTHO05D007852 1.3e-47 193.4 128 83.6
Lalb_Chr08g0241161 Lupinus albus HOM05D006317 ORTHO05D007852 3.0e-47 192.2 128 83.6
Lj1g0010212 Lotus japonicus HOM05D006317 ORTHO05D007852 1.5e-46 189.9 128 82.0
RcHm_v2.0_Chr6g0296581 Rosa chinensis HOM05D006317 ORTHO05D007852 1.6e-45 186.4 123 82.9
Sed0014816 Sechium edule HOM05D006317 ORTHO05D007852 3.6e-45 185.3 144 71.5
FvH4_2g27730 Fragaria vesca HOM05D006317 ORTHO05D007852 4.7e-45 184.9 123 79.7
FAN20G1754 Fragaria x ananassa HOM05D006317 ORTHO05D007852 4.7e-45 184.9 123 79.7
Hma1.2p1_0420F.1_g149670 Hydrangea macrophylla HOM05D006317 ORTHO05D007852 6.2e-45 184.5 124 80.6
Dinv14667 Davidia involucrata HOM05D006317 ORTHO05D007852 8.1e-45 184.1 127 78.7
Potri.019G066600 Populus trichocarpa HOM05D006317 ORTHO05D007852 8.1e-45 184.1 122 80.3
MELO3C010655.2 Cucumis melo HOM05D006317 ORTHO05D007852 1.1e-44 183.7 123 80.5
Sed0004620 Sechium edule HOM05D006317 ORTHO05D007852 1.1e-44 183.7 123 80.5
FAN24G3505 Fragaria x ananassa HOM05D006317 ORTHO05D007852 1.4e-44 183.3 123 78.9
TWI32G0551 Tripterygium wilfordii HOM05D006317 ORTHO05D007852 1.4e-44 183.3 119 83.2
GSVIVG01036785001 Vitis vinifera HOM05D006317 ORTHO05D007852 1.4e-44 183.3 123 80.5
Thecc.08G132100 Theobroma cacao HOM05D006317 ORTHO05D007852 2.3e-44 182.6 123 80.5
TAR375G0871 Trochodendron aralioides HOM05D006317 ORTHO05D007852 2.3e-44 182.6 123 78.9
Manes.02G167400 Manihot esculenta HOM05D006317 ORTHO05D007852 3.1e-44 182.2 119 82.4
TWI34G0863 Tripterygium wilfordii HOM05D006317 ORTHO05D007852 3.1e-44 182.2 119 82.4
Eucgr.D00248 Eucalyptus grandis HOM05D006317 ORTHO05D007852 4.0e-44 181.8 119 80.7
CsaV3_6G034090 Cucumis sativus L. HOM05D006317 ORTHO05D007852 5.2e-44 181.4 123 80.5
Gohir.A05G237800 Gossypium hirsutum HOM05D006317 ORTHO05D007852 5.2e-44 181.4 123 79.7
Actinidia29484 Actinidia chinensis HOM05D006317 ORTHO05D007852 6.8e-44 181.0 122 77.9
Prupe.1G490600 Prunus persica HOM05D006317 ORTHO05D007852 6.8e-44 181.0 123 80.5
Cpa.g.sc64.145 Carica papaya HOM05D006317 ORTHO05D007852 1.2e-43 180.3 123 78.9
CiPaw.15G032500 Carya illinoinensis HOM05D006317 ORTHO05D007852 1.2e-43 180.3 122 80.3
Ciclev10002865m.g Citrus clementina HOM05D006317 ORTHO05D007852 1.2e-43 180.3 123 78.0
MSTRG.25364 Avicennia marina HOM05D006317 ORTHO05D007852 1.5e-43 179.9 123 75.6
Rhsim11G0071000 Rhododendron simsii HOM05D006317 ORTHO05D007852 1.5e-43 179.9 119 79.8
Dinv27277 Davidia involucrata HOM05D006317 ORTHO05D007852 2.6e-43 179.1 112 83.9
Gohir.D05G239800 Gossypium hirsutum HOM05D006317 ORTHO05D007852 2.6e-43 179.1 123 78.9
Gorai.009G248700 Gossypium raimondii HOM05D006317 ORTHO05D007852 2.6e-43 179.1 123 78.9
Cfa018120 Carpinus fangiana HOM05D006317 ORTHO05D007852 4.4e-43 178.3 122 79.5
Duzib041G0795 Durio zibethinus HOM05D006317 ORTHO05D007852 4.4e-43 178.3 123 78.0
CSS0006686 Camellia sinensis var. sinensis HOM05D006317 ORTHO05D007852 5.8e-43 177.9 121 76.9
CSS0008085 Camellia sinensis var. sinensis HOM05D006317 ORTHO05D007852 5.8e-43 177.9 119 79.0
Duzib116G0606 Durio zibethinus HOM05D006317 ORTHO05D007852 5.8e-43 177.9 123 78.0
Manes.18G081900 Manihot esculenta HOM05D006317 ORTHO05D007852 5.8e-43 177.9 119 80.7
Nitab4.5_0001168g0010 Nicotiana tabacum HOM05D006317 ORTHO05D007852 5.8e-43 177.9 123 76.4
Nitab4.5_0002045g0100 Nicotiana tabacum HOM05D006317 ORTHO05D007852 7.5e-43 177.6 124 75.8
Atru.chr13.1550 Acer truncatum HOM05D006317 ORTHO05D007852 9.8e-43 177.2 123 77.2
CSS0027136 Camellia sinensis var. sinensis HOM05D006317 ORTHO05D007852 9.8e-43 177.2 119 79.0
Oeu051968.1 Olea europaea HOM05D006317 ORTHO05D007852 9.8e-43 177.2 123 77.2
Peaxi162Scf01003g00121 Petunia axillaris HOM05D006317 ORTHO05D007852 1.3e-42 176.8 123 75.6
QL09p032738 Quercus lobata HOM05D006317 ORTHO05D007852 2.9e-42 175.6 122 77.9
unitig_8.g3836 Utricularia gibba HOM05D006317 ORTHO05D007852 2.9e-42 175.6 126 73.8
PGSC0003DMG400006049 Solanum tuberosum HOM05D006317 ORTHO05D007852 4.9e-42 174.9 123 76.4
PGR044G1554 Punica granatum HOM05D006317 ORTHO05D007852 6.4e-42 174.5 123 78.0
Sc10g0008060 Simmondsia chinensis HOM05D006317 ORTHO05D007852 8.3e-42 174.1 123 74.0
Cc10_g12550 Coffea canephora HOM05D006317 ORTHO05D007852 1.1e-41 173.7 123 75.6
Nn1g09356 Nelumbo nucifera HOM05D006317 ORTHO05D007852 1.4e-41 173.3 112 78.6
unitig_22.g5398 Utricularia gibba HOM05D006317 ORTHO05D007852 1.4e-41 173.3 123 75.6
CANSAT35G0412 Cannabis sativa HOM05D006317 ORTHO05D007852 1.9e-41 172.9 123 77.2
Solyc11g005000.2 Solanum lycopersicum HOM05D006317 ORTHO05D007852 1.9e-41 172.9 123 75.6
CAN.G342.14 Capsicum annuum HOM05D006317 ORTHO05D007852 2.4e-41 172.6 123 74.8
Oeu021883.1 Olea europaea HOM05D006317 ORTHO05D007852 4.1e-41 171.8 123 75.6
SalBow2G0856 Salvia bowleyana HOM05D006317 ORTHO05D007852 4.1e-41 171.8 129 72.1
Aqoxy1G01739 Aquilegia oxysepala HOM05D006317 ORTHO05D007852 7.1e-41 171.0 129 72.1
ECA246G3352 Erigeron canadensis HOM05D006317 ORTHO05D007852 1.2e-40 170.2 119 77.3
Migut.N03266 Erythranthe guttata HOM05D006317 ORTHO05D007852 1.2e-40 170.2 123 74.8
THA.LOC104813677 Tarenaya hassleriana HOM05D006317 ORTHO05D007852 2.7e-40 169.1 123 74.0
Aa31LG4G7370 Aethionema arabicum HOM05D006317 ORTHO05D007852 3.5e-40 168.7 123 74.8
Sopen11g001020 Solanum pennellii HOM05D006317 ORTHO05D007852 3.5e-40 168.7 123 74.0
Carub.0002s2423 Capsella rubella HOM05D006317 ORTHO05D007852 6.0e-40 167.9 123 74.8
SGA_v2.0_scaffold25G11134 Striga asiatica HOM05D006317 ORTHO05D007852 6.0e-40 167.9 108 80.6
ATR1101G062 Amborella trichopoda HOM05D006317 ORTHO05D007852 1.0e-39 167.2 110 78.2
Sabra19G0078300 Salix brachista HOM05D006317 ORTHO05D007852 1.3e-39 166.8 143 69.9
Lsat_1_v5_gn_6_109060 Lactuca sativa HOM05D006317 ORTHO05D007852 2.3e-39 166.0 119 73.9
A08p28870 Brassica napus HOM05D006317 ORTHO05D007852 3.9e-39 165.2 125 72.0
ClCG08G005990 Citrullus lanatus HOM05D006317 ORTHO05D007852 3.9e-39 165.2 193 54.4
Thhalv10019323m.g Eutrema salsugineum HOM05D006317 ORTHO05D007852 6.6e-39 164.5 123 73.2
MBI03_g35425_MAGBIO Magnolia biondii HOM05D006317 ORTHO05D007852 1.5e-38 163.3 112 75.0
CARHR070830 Cardamine hirsuta HOM05D006317 ORTHO05D007852 2.5e-38 162.5 123 72.4
BcaB03g14259 Brassica carinata HOM05D006317 ORTHO05D007852 4.3e-38 161.8 123 72.4
CDE06G2198 Ceratophyllum demersum HOM05D006317 ORTHO05D007852 4.3e-38 161.8 123 69.1
BraA06t24865Z Brassica rapa HOM05D006317 ORTHO05D007852 5.6e-38 161.4 123 72.4
BraA08t34818Z Brassica rapa HOM05D006317 ORTHO05D007852 1.2e-37 160.2 123 71.5
BcaB07g32159 Brassica carinata HOM05D006317 ORTHO05D007852 1.6e-37 159.8 123 70.7
C08p20980 Brassica napus HOM05D006317 ORTHO05D007852 1.6e-37 159.8 123 70.7
BolC8t49735H Brassica oleracea HOM05D006317 ORTHO05D007852 1.6e-37 159.8 123 70.7
AT1G77350 Arabidopsis thaliana HOM05D006317 ORTHO05D007852 2.8e-37 159.1 124 71.8
BcaC06g34898 Brassica carinata HOM05D006317 ORTHO05D007852 2.8e-37 159.1 122 72.1
BolC7t42733H Brassica oleracea HOM05D006317 ORTHO05D007852 2.8e-37 159.1 122 72.1
A06p17730 Brassica napus HOM05D006317 ORTHO05D007852 4.7e-37 158.3 123 70.7
CDE07G1891 Ceratophyllum demersum HOM05D006317 ORTHO05D007852 4.7e-37 158.3 110 76.4
C07p22030 Brassica napus HOM05D006317 ORTHO05D007852 8.1e-37 157.5 121 71.9
A07p14980 Brassica napus HOM05D006317 ORTHO05D007852 1.1e-36 157.1 124 70.2
BraA07t29244Z Brassica rapa HOM05D006317 ORTHO05D007852 1.1e-36 157.1 124 70.2
Sp1g19190 Schrenkiella parvula HOM05D006317 ORTHO05D007852 1.1e-36 157.1 119 71.4
Thhalv10009123m.g Eutrema salsugineum HOM05D006317 ORTHO05D007852 1.4e-36 156.8 124 71.8
HanXRQChr05g0148711 Helianthus annuus HOM05D006317 ORTHO05D007852 1.8e-36 156.4 112 74.1
AUR62016336 Chenopodium quinoa HOM05D006317 ORTHO05D007852 1.2e-35 153.7 123 67.5
SHI09189 Sapria himalayana HOM05D006317 ORTHO05D007852 1.5e-35 153.3 138 63.0
Zm00001eb128810 Zea mays HOM05D006317 ORTHO05D007852 7.6e-35 151.0 119 68.9
FAN27G3154 Fragaria x ananassa HOM05D006317 ORTHO05D007852 1.7e-34 149.8 91 85.7
AL2G37550 Arabidopsis lyrata HOM05D006317 ORTHO05D007852 2.2e-34 149.4 149 61.7
COL.COLO4_05688 Corchorus olitorius HOM05D006317 ORTHO05D007852 6.4e-34 147.9 93 82.8
Ah.01g020580 Amaranthus hybridus HOM05D006317 ORTHO05D007852 8.4e-34 147.5 112 68.8
Os05g0486200 Oryza sativa ssp. japonica HOM05D006317 ORTHO05D007852 4.1e-33 145.2 115 67.8
HPP92_021212 Vanilla planifolia HOM05D006317 ORTHO05D007852 5.4e-33 144.8 112 69.6
AagrBONN_evm.TU.Sc2ySwM_344.4689 Anthoceros agrestis HOM05D006317 ORTHO05D007852 7.1e-33 144.4 107 66.4
vmacro00858 Vaccinium macrocarpon HOM05D006317 ORTHO05D007852 2.7e-32 142.5 91 80.2
vmacro16444 Vaccinium macrocarpon HOM05D006317 ORTHO05D007852 6.0e-32 141.4 94 79.8
CBR_g12067 Chara braunii HOM05D006317 ORTHO05D007852 1.3e-31 140.2 104 68.3
Mapoly0014s0111 Marchantia polymorpha HOM05D006317 ORTHO05D007852 2.3e-31 139.4 122 58.2
MBI06_g36652_MAGBIO Magnolia biondii HOM05D006317 ORTHO05D007852 1.9e-30 136.3 112 67.0
SMO298G0052 Selaginella moellendorffii HOM05D006317 ORTHO05D007852 5.6e-30 134.8 101 68.3
EL10Ac9g21899 Beta vulgaris HOM05D006317 ORTHO05D007852 8.1e-29 131.0 101 68.3
DCAR_018876 Daucus carota HOM05D006317 ORTHO05D007852 3.0e-23 112.5 69 85.5
BcaB03g14260 Brassica carinata HOM05D006317 ORTHO05D007852 1.9e-22 109.8 126 55.6
Nn7g37402 Nelumbo nucifera HOM05D006317 ORTHO05D007852 1.9e-22 109.8 70 77.1
Gohir.A02G071601 Gossypium hirsutum HOM05D006317 ORTHO05D007852 2.7e-16 89.4 58 82.8
Haze_17997 Corylus avellana HOM05D001650 ORTHO05D001592 7.9e-16 87.8 122 46.7
CSS0043705 Camellia sinensis var. sinensis HOM05D006317 ORTHO05D007852 2.8e-13 79.3 46 80.4
SGA_v2.0_scaffold28G11977 Striga asiatica HOM05D006317 ORTHO05D007852 5.3e-12 75.1 59 67.8
BolC5t30761H Brassica oleracea HOM05D006317 ORTHO05D007852 6.4e-10 68.2 52 73.1
QL05p046423 Quercus lobata HOM05D006317 ORTHO05D007852 1.8e-07 60.1 53 66.0
FAN15G1039 Fragaria x ananassa HOM05D006317 ORTHO05D007852 2.3e-07 59.7 37 75.7


User provided reference genes

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