Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.0E68DR Arachis hypogaea HOM05D007324 ORTHO05D007884 4.6e-62 241.1 127 100.0
arahy.Tifrunner.gnm1.ann1.69TWVD Arachis hypogaea HOM05D007324 ORTHO05D007884 4.6e-62 241.1 127 100.0
Lalb_Chr16g0386011 Lupinus albus HOM05D007324 ORTHO05D007884 1.2e-30 136.7 127 67.7
Glyma.05G112000 Glycine max HOM05D007324 ORTHO05D007884 1.3e-29 133.3 139 65.5
Glyma.17G155000 Glycine max HOM05D007324 ORTHO05D007884 2.3e-29 132.5 141 64.5
Phvul.003G230300 Phaseolus vulgaris HOM05D007324 ORTHO05D007884 1.2e-25 120.2 127 63.0
CiPaw.11G092000 Carya illinoinensis HOM05D007324 ORTHO05D007884 2.9e-24 115.5 132 59.8
PGR042G1904 Punica granatum HOM05D007324 ORTHO05D007884 1.9e-23 112.8 124 56.5
Actinidia14815 Actinidia chinensis HOM05D007324 ORTHO05D007884 2.7e-22 109.0 125 56.8
Ciclev10033018m.g Citrus clementina HOM05D007324 ORTHO05D007884 2.7e-22 109.0 143 51.7
Psat4g078840 Pisum sativum HOM05D007324 ORTHO05D007884 4.6e-22 108.2 130 56.9
Atru.chr6.1738 Acer truncatum HOM05D007324 ORTHO05D007884 1.3e-21 106.7 119 56.3
Sopen06g021310 Solanum pennellii HOM05D007324 ORTHO05D007884 3.0e-21 105.5 119 57.1
ECA240G0465 Erigeron canadensis HOM05D007324 ORTHO05D007884 6.7e-21 104.4 136 53.7
CSS0048146 Camellia sinensis var. sinensis HOM05D007324 ORTHO05D007884 8.7e-21 104.0 135 50.4
Eucgr.E00290 Eucalyptus grandis HOM05D007324 ORTHO05D007884 8.7e-21 104.0 128 52.3
Medtr4g098480 Medicago truncatula HOM05D007324 ORTHO05D007884 1.5e-20 103.2 128 55.5
Solyc06g061110.2 Solanum lycopersicum HOM05D007324 ORTHO05D007884 1.9e-20 102.8 118 55.9
CSS0008196 Camellia sinensis var. sinensis HOM05D007324 ORTHO05D007884 1.6e-19 99.8 135 48.9
HanXRQChr02g0043531 Helianthus annuus HOM05D007324 ORTHO05D007884 6.3e-19 97.8 125 51.2
HanXRQChr03g0084061 Helianthus annuus HOM05D007324 ORTHO05D007884 6.3e-19 97.8 138 51.4
Ca_22071_v3 Cicer arietinum L. HOM05D007324 ORTHO05D007884 1.8e-18 96.3 126 54.8
Lj2A242T77 Lonicera japonica HOM05D007324 ORTHO05D007884 3.1e-18 95.5 129 50.4
Haze_08257 Corylus avellana HOM05D007324 ORTHO05D007884 4.1e-18 95.1 111 57.7
CsaV3_3G001850 Cucumis sativus L. HOM05D007324 ORTHO05D007884 4.1e-18 95.1 118 52.5
PGSC0003DMG400002093 Solanum tuberosum HOM05D007324 ORTHO05D007884 4.1e-18 95.1 118 53.4
TPR.G29033 Trifolium pratense HOM05D007324 ORTHO05D007884 1.5e-17 93.2 126 52.4
TWI81G0167 Tripterygium wilfordii HOM05D007324 ORTHO05D007884 2.6e-17 92.4 126 46.8
Lsat_1_v5_gn_6_78560 Lactuca sativa HOM05D007324 ORTHO05D007884 4.5e-17 91.7 147 45.6
A08p09020 Brassica napus HOM05D007324 ORTHO05D007884 7.6e-17 90.9 93 57.0
BraA08t32903Z Brassica rapa HOM05D007324 ORTHO05D007884 7.6e-17 90.9 93 57.0
Oeu047787.1 Olea europaea HOM05D007324 ORTHO05D007884 1.3e-16 90.1 122 51.6
BolC8t47935H Brassica oleracea HOM05D007324 ORTHO05D007884 3.8e-16 88.6 93 57.0
CAN.G201.20 Capsicum annuum HOM05D007324 ORTHO05D007884 1.1e-15 87.0 133 48.9
Lj4g0022663 Lotus japonicus HOM05D007324 ORTHO05D007884 2.5e-15 85.9 133 48.9
Migut.E01386 Erythranthe guttata HOM05D007324 ORTHO05D007884 3.2e-15 85.5 118 47.5
Thhalv10009848m.g Eutrema salsugineum HOM05D007324 ORTHO05D007884 4.2e-15 85.1 90 57.8
PSO478G0244 Papaver somniferum HOM05D007324 ORTHO05D007884 5.5e-15 84.7 100 56.0
PSO782G2910 Papaver somniferum HOM05D007324 ORTHO05D007884 9.4e-15 84.0 100 55.0
Cpa.g.sc18.65 Carica papaya HOM05D007324 ORTHO05D007884 1.2e-14 83.6 126 48.4
MELO3C032260.2 Cucumis melo HOM05D007324 ORTHO05D007884 2.7e-14 82.4 130 46.9
Gohir.A08G157700 Gossypium hirsutum HOM05D007324 ORTHO05D007884 2.7e-14 82.4 75 62.7
Manes.15G168800 Manihot esculenta HOM05D007324 ORTHO05D007884 3.6e-14 82.0 74 63.5
Gorai.004G186200 Gossypium raimondii HOM05D007324 ORTHO05D007884 4.6e-14 81.6 75 61.3
Cfa012419 Carpinus fangiana HOM05D007324 ORTHO05D007884 7.9e-14 80.9 120 48.3
BcaB04g17953 Brassica carinata HOM05D007324 ORTHO05D007884 1.0e-13 80.5 99 52.5
PSO782G1330 Papaver somniferum HOM05D007324 ORTHO05D007884 1.0e-13 80.5 100 54.0
Gohir.D08G178000 Gossypium hirsutum HOM05D007324 ORTHO05D007884 2.3e-13 79.3 120 45.8
MD06G1032700 Malus domestica HOM05D007324 ORTHO05D007884 5.1e-13 78.2 90 57.8
ClCG10G001740 Citrullus lanatus HOM05D007324 ORTHO05D007884 1.9e-12 76.3 118 47.5
CDE12G0317 Ceratophyllum demersum HOM05D007324 ORTHO05D007884 2.5e-12 75.9 78 56.4
DCAR_005623 Daucus carota HOM05D007324 ORTHO05D007884 2.5e-12 75.9 110 50.0
SGA_v2.0_scaffold144G35830 Striga asiatica HOM05D007324 ORTHO05D007884 2.5e-12 75.9 115 46.1
Aa31LG2G13400 Aethionema arabicum HOM05D007324 ORTHO05D007884 9.7e-12 73.9 122 45.9
Ah.07g200240 Amaranthus hybridus HOM05D007324 ORTHO05D007884 1.3e-11 73.6 92 52.2
FvH4_5g21830 Fragaria vesca HOM05D007324 ORTHO05D007884 2.2e-11 72.8 91 53.8
FAN13G0501 Fragaria x ananassa HOM05D007324 ORTHO05D007884 2.2e-11 72.8 127 42.5
COL.COLO4_17062 Corchorus olitorius HOM05D007324 ORTHO05D007884 4.8e-11 71.6 144 37.5
FAN04G2965 Fragaria x ananassa HOM05D007324 ORTHO05D007884 1.1e-10 70.5 87 52.9
BolC5t31929H Brassica oleracea HOM05D007324 ORTHO05D007884 1.4e-10 70.1 90 54.4
CARHR129450 Cardamine hirsuta HOM05D011082 ORTHO05D007884 1.4e-10 70.1 69 59.4
Cc08_g02520 Coffea canephora HOM05D007324 ORTHO05D007884 1.8e-10 69.7 108 49.1
FAN18G2652 Fragaria x ananassa HOM05D007324 ORTHO05D007884 1.8e-10 69.7 87 52.9
Peaxi162Scf00615g00021 Petunia axillaris HOM05D007324 ORTHO05D007884 2.4e-10 69.3 130 43.8
Rhsim07G0125700 Rhododendron simsii HOM05D007324 ORTHO05D007884 3.1e-10 68.9 125 44.0
Aa31LG9G15320 Aethionema arabicum HOM05D011082 ORTHO05D007884 1.5e-09 66.6 94 52.1
C05p32030 Brassica napus HOM05D007324 ORTHO05D007884 2.0e-09 66.2 90 53.3
FAN08G0008 Fragaria x ananassa HOM05D007324 ORTHO05D007884 2.0e-09 66.2 87 50.6
vmacro22242 Vaccinium macrocarpon HOM05D007324 ORTHO05D007884 3.4e-09 65.5 90 51.1
MBI04_g22943_MAGBIO Magnolia biondii HOM05D007324 ORTHO05D007884 5.9e-09 64.7 87 52.9
C05p32110 Brassica napus HOM05D007324 ORTHO05D007884 1.7e-08 63.2 130 40.8
BolC5t31940H Brassica oleracea HOM05D007324 ORTHO05D007884 1.7e-08 63.2 130 40.8
Thhalv10017485m.g Eutrema salsugineum HOM05D011082 ORTHO05D007884 2.2e-08 62.8 69 55.1
CANSAT21G2393 Cannabis sativa HOM05D007324 ORTHO05D007884 3.8e-08 62.0 142 40.8
FvH4_5g21820 Fragaria vesca HOM05D031477 ORTHO05D007884 3.8e-08 62.0 73 54.8
CSS0050429 Camellia sinensis var. sinensis HOM05D007324 ORTHO05D007884 6.5e-08 61.2 124 40.3
BcaB07g32955 Brassica carinata HOM05D007324 ORTHO05D007884 1.1e-07 60.5 90 46.7
Nitab4.5_0008428g0010 Nicotiana tabacum HOM05D007324 ORTHO05D007884 3.2e-07 58.9 131 38.9
Hma1.2p1_0585F.1_g183650 Hydrangea macrophylla HOM05D007324 ORTHO05D007884 4.2e-07 58.5 93 46.2
SalBow1G4617 Salvia bowleyana HOM05D007324 ORTHO05D007884 4.2e-07 58.5 118 39.0
SalBow8G4924 Salvia bowleyana HOM05D007324 ORTHO05D007884 4.2e-07 58.5 118 39.0
Potri.001G143700 Populus trichocarpa HOM05D007324 ORTHO05D007884 7.2e-07 57.8 128 39.1
Peaxi162Scf00460g00044 Petunia axillaris HOM05D007324 ORTHO05D007884 9.4e-07 57.4 124 39.5
Sp1g28340 Schrenkiella parvula HOM05D007324 ORTHO05D007884 9.4e-07 57.4 113 41.6
Prupe.5G039300 Prunus persica HOM05D007324 ORTHO05D007884 1.2e-06 57.0 112 39.3
Nn6g33613 Nelumbo nucifera HOM05D007324 ORTHO05D007884 2.7e-06 55.8 122 40.2
Potri.003G090501 Populus trichocarpa HOM05D007324 ORTHO05D007884 3.6e-06 55.5 57 57.9
EL10Ac5g12140 Beta vulgaris HOM05D028673 ORTHO05D031676 4.7e-06 55.1 92 45.7
Hund11251 Selenicereus undatus HOM05D007324 ORTHO05D007884 6.1e-06 54.7 75 49.3
AT2G35300 Arabidopsis thaliana HOM05D011082 ORTHO05D007884 7.9e-06 54.3 69 49.3
Prupe.5G039400 Prunus persica HOM05D007324 ORTHO05D007884 7.9e-06 54.3 52 63.5


User provided reference genes

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