Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.0D280N Arachis hypogaea HOM05D006766 ORTHO05D008534 2.7e-37 158.3 87 100.0
arahy.Tifrunner.gnm1.ann1.PI6USP Arachis hypogaea HOM05D006766 ORTHO05D008534 2.7e-37 158.3 87 100.0
Lalb_Chr03g0025701 Lupinus albus HOM05D006766 ORTHO05D008534 3.0e-28 128.3 87 78.2
Lj3g0004404 Lotus japonicus HOM05D006766 ORTHO05D008534 1.3e-23 112.8 85 70.6
VMungo1127G0063 Vigna mungo HOM05D006766 ORTHO05D008534 1.7e-23 112.5 79 79.7
Lalb_Chr01g0002551 Lupinus albus HOM05D006766 ORTHO05D008534 4.9e-23 110.9 87 71.3
Phvul.011G045300 Phaseolus vulgaris HOM05D006766 ORTHO05D008534 1.1e-22 109.8 79 75.9
Glyma.12G043301 Glycine max HOM05D006766 ORTHO05D008534 2.3e-20 102.1 80 73.8
Psat7g184720 Pisum sativum HOM05D006766 ORTHO05D008534 3.9e-20 101.3 85 64.7
Ca_20875_v3 Cicer arietinum L. HOM05D006766 ORTHO05D008534 5.1e-20 100.9 85 65.9
TPR.G19399 Trifolium pratense HOM05D006766 ORTHO05D008534 8.6e-20 100.1 87 65.5
Glyma.11G117900 Glycine max HOM05D006766 ORTHO05D008534 1.5e-19 99.4 79 69.6
Medtr4g070030 Medicago truncatula HOM05D006766 ORTHO05D008534 4.3e-19 97.8 87 64.4
Lj5g0021871 Lotus japonicus HOM05D006766 ORTHO05D008534 7.3e-19 97.1 85 62.4
Cfa005004 Carpinus fangiana HOM05D006766 ORTHO05D008534 2.0e-16 89.0 86 57.0
Manes.17G101000 Manihot esculenta HOM05D006766 ORTHO05D008534 3.4e-16 88.2 87 58.6
COL.COLO4_25930 Corchorus olitorius HOM05D006766 ORTHO05D008534 4.4e-16 87.8 85 57.6
Thecc.02G085300 Theobroma cacao HOM05D006766 ORTHO05D008534 7.6e-16 87.0 85 58.8
Duzib248G0712 Durio zibethinus HOM05D006766 ORTHO05D008534 1.7e-15 85.9 85 56.5
TWI31G1395 Tripterygium wilfordii HOM05D006766 ORTHO05D008534 1.7e-15 85.9 86 57.0
Gohir.A12G028700 Gossypium hirsutum HOM05D006766 ORTHO05D008534 2.2e-15 85.5 79 58.2
Gohir.D12G028200 Gossypium hirsutum HOM05D006766 ORTHO05D008534 2.2e-15 85.5 79 58.2
Gorai.008G028800 Gossypium raimondii HOM05D006766 ORTHO05D008534 2.2e-15 85.5 79 58.2
Haze_02383 Corylus avellana HOM05D001555 ORTHO05D001616 2.9e-15 85.1 86 55.8
QL12p018934 Quercus lobata HOM05D006766 ORTHO05D008534 4.9e-15 84.3 96 54.2
Carub.0007s0121 Capsella rubella HOM05D006766 ORTHO05D008534 6.4e-15 84.0 86 57.0
CiPaw.05G064400 Carya illinoinensis HOM05D006766 ORTHO05D008534 8.4e-15 83.6 85 54.1
AL7G11290 Arabidopsis lyrata HOM05D006766 ORTHO05D008534 1.1e-14 83.2 86 57.0
AT4G39300 Arabidopsis thaliana HOM05D006766 ORTHO05D008534 1.1e-14 83.2 86 57.0
BcaNung03879 Brassica carinata HOM05D006766 ORTHO05D008534 1.9e-14 82.4 91 53.8
Sp7g36570 Schrenkiella parvula HOM05D006766 ORTHO05D008534 2.4e-14 82.0 87 56.3
Eucgr.I01270 Eucalyptus grandis HOM05D006766 ORTHO05D008534 4.2e-14 81.3 84 56.0
THA.LOC104824828 Tarenaya hassleriana HOM05D006766 ORTHO05D008534 4.2e-14 81.3 85 57.6
CARHR247400 Cardamine hirsuta HOM05D006766 ORTHO05D008534 5.4e-14 80.9 87 54.0
Gohir.A03G194400 Gossypium hirsutum HOM05D006766 ORTHO05D008534 5.4e-14 80.9 88 53.4
Gohir.D02G215600 Gossypium hirsutum HOM05D006766 ORTHO05D008534 5.4e-14 80.9 88 53.4
Aa31LG7G14800 Aethionema arabicum HOM05D006766 ORTHO05D008534 7.1e-14 80.5 87 55.2
BcaNung02343 Brassica carinata HOM05D006766 ORTHO05D008534 7.1e-14 80.5 84 54.8
C07p63250 Brassica napus HOM05D006766 ORTHO05D008534 7.1e-14 80.5 84 54.8
BolC7t46735H Brassica oleracea HOM05D006766 ORTHO05D008534 7.1e-14 80.5 84 54.8
Sabra04G0102700 Salix brachista HOM05D006766 ORTHO05D008534 9.2e-14 80.1 85 55.3
Cpa.g.sc62.150 Carica papaya HOM05D006766 ORTHO05D008534 1.6e-13 79.3 84 52.4
Ciclev10029674m.g Citrus clementina HOM05D006766 ORTHO05D008534 2.1e-13 79.0 84 57.1
RcHm_v2.0_Chr6g0264231 Rosa chinensis HOM05D006766 ORTHO05D008534 2.1e-13 79.0 88 54.5
Thhalv10026662m.g Eutrema salsugineum HOM05D006766 ORTHO05D008534 4.6e-13 77.8 86 54.7
FAN24G2015 Fragaria x ananassa HOM05D006766 ORTHO05D008534 4.6e-13 77.8 88 52.3
A06p48570 Brassica napus HOM05D006766 ORTHO05D008534 6.0e-13 77.4 90 53.3
Duzib052G0491 Durio zibethinus HOM05D006766 ORTHO05D008534 7.8e-13 77.0 84 52.4
Potri.004G154800 Populus trichocarpa HOM05D006766 ORTHO05D008534 7.8e-13 77.0 87 55.2
FvH4_2g08780 Fragaria vesca HOM05D006766 ORTHO05D008534 1.0e-12 76.6 88 52.3
FAN27G0567 Fragaria x ananassa HOM05D006766 ORTHO05D008534 1.0e-12 76.6 88 52.3
Potri.009G115900 Populus trichocarpa HOM05D006766 ORTHO05D008534 1.0e-12 76.6 87 56.3
Prupe.8G097200 Prunus persica HOM05D006766 ORTHO05D008534 1.0e-12 76.6 87 55.2
PGR142G1230 Punica granatum HOM05D006766 ORTHO05D008534 1.0e-12 76.6 83 54.2
CSS0001017 Camellia sinensis var. sinensis HOM05D006766 ORTHO05D008534 1.3e-12 76.3 88 56.8
TAR381G1290 Trochodendron aralioides HOM05D006766 ORTHO05D008534 1.3e-12 76.3 85 52.9
C01p00430 Brassica napus HOM05D006766 ORTHO05D008534 1.7e-12 75.9 88 50.0
BolC1t00048H Brassica oleracea HOM05D006766 ORTHO05D008534 1.7e-12 75.9 88 50.0
ClCG02G005020 Citrullus lanatus HOM05D006766 ORTHO05D008534 2.3e-12 75.5 82 53.7
CSS0023455 Camellia sinensis var. sinensis HOM05D006766 ORTHO05D008534 3.0e-12 75.1 89 56.2
MD10G1031700 Malus domestica HOM05D006766 ORTHO05D008534 3.0e-12 75.1 86 54.7
A01p00310 Brassica napus HOM05D006766 ORTHO05D008534 3.9e-12 74.7 87 50.6
BraA01t00038Z Brassica rapa HOM05D006766 ORTHO05D008534 3.9e-12 74.7 87 50.6
MD10G1076400 Malus domestica HOM05D006766 ORTHO05D008534 3.9e-12 74.7 86 54.7
FAN15G0619 Fragaria x ananassa HOM05D006766 ORTHO05D008534 5.1e-12 74.3 88 52.3
FAN20G1934 Fragaria x ananassa HOM05D004333 ORTHO05D005363 6.6e-12 73.9 92 51.1
vmacro02108 Vaccinium macrocarpon HOM05D006766 ORTHO05D008534 1.1e-11 73.2 87 50.6
Sc18g0004470 Simmondsia chinensis HOM05D006766 ORTHO05D008534 1.5e-11 72.8 85 51.8
GSVIVG01031965001 Vitis vinifera HOM05D006766 ORTHO05D008534 1.9e-11 72.4 85 49.4
CsaV3_7G023550 Cucumis sativus L. HOM05D006766 ORTHO05D008534 4.3e-11 71.2 73 52.1
Sed0007595 Sechium edule HOM05D006766 ORTHO05D008534 7.3e-11 70.5 84 50.0
Atru.chr5.3014 Acer truncatum HOM05D006766 ORTHO05D008534 9.6e-11 70.1 78 55.1
MELO3C012523.2 Cucumis melo HOM05D006766 ORTHO05D008534 9.6e-11 70.1 86 48.8
Hma1.2p1_0066F.1_g036420 Hydrangea macrophylla HOM05D006766 ORTHO05D008534 1.6e-10 69.3 89 52.8
Rhsim11G0177000 Rhododendron simsii HOM05D006766 ORTHO05D008534 1.6e-10 69.3 77 55.8
Actinidia27896 Actinidia chinensis HOM05D006766 ORTHO05D008534 2.1e-10 68.9 90 48.9
Aa31LG6G15960 Aethionema arabicum HOM05D006766 ORTHO05D008534 2.8e-10 68.6 83 49.4
ECA234G2659 Erigeron canadensis HOM05D006766 ORTHO05D008534 2.8e-10 68.6 87 50.6
PSO675G5014 Papaver somniferum HOM05D006766 ORTHO05D008534 3.6e-10 68.2 83 48.2
PSO675G5258 Papaver somniferum HOM05D006766 ORTHO05D008534 3.6e-10 68.2 83 48.2
Cc02_g17570 Coffea canephora HOM05D006766 ORTHO05D008534 6.2e-10 67.4 80 53.8
Lsat_1_v5_gn_5_118560 Lactuca sativa HOM05D006766 ORTHO05D008534 1.4e-09 66.2 84 47.6
Aqoxy5G01642 Aquilegia oxysepala HOM05D006766 ORTHO05D008534 1.8e-09 65.9 85 45.9
PSO144G0109 Papaver somniferum HOM05D006766 ORTHO05D008534 1.8e-09 65.9 83 48.2
PSO144G0117 Papaver somniferum HOM05D006766 ORTHO05D008534 1.8e-09 65.9 83 48.2
PSO541G0900 Papaver somniferum HOM05D006766 ORTHO05D008534 3.1e-09 65.1 83 47.0
Ah.01g019400 Amaranthus hybridus HOM05D001555 ORTHO05D001616 4.0e-09 64.7 84 51.2
DCAR_003674 Daucus carota HOM05D006766 ORTHO05D008534 4.0e-09 64.7 73 52.1
Nn1g04840 Nelumbo nucifera HOM05D006766 ORTHO05D008534 4.0e-09 64.7 86 50.0
Nn5g30294 Nelumbo nucifera HOM05D006766 ORTHO05D008534 5.3e-09 64.3 92 53.3
Lsat_1_v5_gn_7_89221 Lactuca sativa HOM05D006766 ORTHO05D008534 6.9e-09 63.9 85 48.2
TAR625G1191 Trochodendron aralioides HOM05D006766 ORTHO05D008534 9.0e-09 63.5 88 52.3
Hma1.2p1_0633F.1_g192560 Hydrangea macrophylla HOM05D006766 ORTHO05D008534 1.2e-08 63.2 86 48.8
Sabra09G0089100 Salix brachista HOM05D006766 ORTHO05D008534 1.2e-08 63.2 45 75.6
Dinv42065 Davidia involucrata HOM05D006766 ORTHO05D008534 1.5e-08 62.8 46 69.6
Sed0021705 Sechium edule HOM05D006766 ORTHO05D008534 1.5e-08 62.8 84 45.2
AUR62011324 Chenopodium quinoa HOM05D006766 ORTHO05D008534 2.0e-08 62.4 86 50.0
AUR62016736 Chenopodium quinoa HOM05D006766 ORTHO05D008534 2.0e-08 62.4 86 50.0
RcHm_v2.0_Chr5g0010131 Rosa chinensis HOM05D006766 ORTHO05D008534 2.0e-08 62.4 87 48.3
EL10Ac9g21725 Beta vulgaris HOM05D006766 ORTHO05D008534 2.6e-08 62.0 88 47.7
RcHm_v2.0_Chr1g0349571 Rosa chinensis HOM05D006766 ORTHO05D008534 3.4e-08 61.6 40 75.0
Ah.01g006260 Amaranthus hybridus HOM05D006766 ORTHO05D008534 4.4e-08 61.2 88 46.6
HanXRQChr10g0307051 Helianthus annuus HOM05D006766 ORTHO05D008534 4.4e-08 61.2 86 45.3
Gorai.005G243600 Gossypium raimondii HOM05D006766 ORTHO05D008534 1.7e-07 59.3 84 45.2
Hund06233 Selenicereus undatus HOM05D006766 ORTHO05D008534 4.9e-07 57.8 90 42.2
BcaNung01271 Brassica carinata HOM05D006766 ORTHO05D008534 1.4e-06 56.2 77 44.2
Lsat_1_v5_gn_9_70521 Lactuca sativa HOM05D006766 ORTHO05D008534 9.3e-06 53.5 89 42.7


User provided reference genes

Program Settings