Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.0C4VVF Arachis hypogaea HOM05D003527 ORTHO05D004099 3.0e-98 362.1 216 100.0
arahy.Tifrunner.gnm1.ann1.QZ6FSS Arachis hypogaea HOM05D003527 ORTHO05D004099 2.7e-86 322.4 217 93.1
Glyma.15G039000 Glycine max HOM05D003527 ORTHO05D004099 9.3e-31 137.9 228 46.9
VMungo1080G1739 Vigna mungo HOM05D003527 ORTHO05D004099 2.7e-30 136.3 214 49.1
Prupe.6G079000 Prunus persica HOM05D003527 ORTHO05D004099 4.6e-30 135.6 227 44.1
Medtr2g096780 Medicago truncatula HOM05D003527 ORTHO05D004099 6.0e-30 135.2 221 46.6
MD11G1110500 Malus domestica HOM05D003527 ORTHO05D004099 3.9e-29 132.5 225 46.2
Ciclev10029234m.g Citrus clementina HOM05D003527 ORTHO05D004099 5.1e-29 132.1 240 44.2
FAN25G2547 Fragaria x ananassa HOM05D003527 ORTHO05D004099 7.4e-28 128.3 222 45.0
Thecc.09G322900 Theobroma cacao HOM05D003527 ORTHO05D004099 4.8e-27 125.6 196 48.0
Potri.009G030100 Populus trichocarpa HOM05D003527 ORTHO05D004099 8.1e-27 124.8 232 44.8
FAN16G0579 Fragaria x ananassa HOM05D003527 ORTHO05D004099 1.1e-26 124.4 226 43.8
Gohir.D05G096200 Gossypium hirsutum HOM05D003527 ORTHO05D004099 1.8e-26 123.6 220 45.5
Gorai.009G099700 Gossypium raimondii HOM05D003527 ORTHO05D004099 1.8e-26 123.6 220 45.5
RcHm_v2.0_Chr5g0064221 Rosa chinensis HOM05D003527 ORTHO05D004099 1.8e-26 123.6 222 45.5
MD03G1096000 Malus domestica HOM05D003527 ORTHO05D004099 2.4e-26 123.2 230 43.9
Haze_24084 Corylus avellana HOM05D003527 ORTHO05D004099 5.3e-26 122.1 225 47.6
FAN11G1093 Fragaria x ananassa HOM05D003527 ORTHO05D004099 6.9e-26 121.7 225 45.3
Sabra09G0021000 Salix brachista HOM05D003527 ORTHO05D004099 9.0e-26 121.3 233 43.3
FAN21G2526 Fragaria x ananassa HOM05D003527 ORTHO05D004099 1.2e-25 120.9 222 44.1
Dinv12411 Davidia involucrata HOM05D003527 ORTHO05D004099 1.5e-25 120.6 229 43.2
Dinv16990 Davidia involucrata HOM05D003527 ORTHO05D004099 1.5e-25 120.6 231 43.7
Dinv42939 Davidia involucrata HOM05D003527 ORTHO05D004099 1.5e-25 120.6 231 43.7
Dinv43161 Davidia involucrata HOM05D003527 ORTHO05D004099 1.5e-25 120.6 231 43.7
Duzib168G1608 Durio zibethinus HOM05D003527 ORTHO05D004099 2.6e-25 119.8 197 46.7
Sabra16G0144000 Salix brachista HOM05D003527 ORTHO05D004099 7.6e-25 118.2 234 44.4
CSS0044295 Camellia sinensis var. sinensis HOM05D003527 ORTHO05D004099 2.2e-24 116.7 235 38.7
ClCG02G020230 Citrullus lanatus HOM05D003527 ORTHO05D004099 2.2e-24 116.7 193 46.6
Gorai.001G110200 Gossypium raimondii HOM05D003527 ORTHO05D004099 2.2e-24 116.7 197 47.7
GSVIVG01024982001 Vitis vinifera HOM05D003527 ORTHO05D004099 2.2e-24 116.7 195 47.7
Gohir.A05G096000 Gossypium hirsutum HOM05D003527 ORTHO05D004099 2.9e-24 116.3 220 43.6
Manes.04G034300 Manihot esculenta HOM05D003527 ORTHO05D004099 2.9e-24 116.3 232 43.5
Potri.001G238900 Populus trichocarpa HOM05D003527 ORTHO05D004099 2.9e-24 116.3 234 43.2
TPR.G34322 Trifolium pratense HOM05D003527 ORTHO05D004099 2.9e-24 116.3 178 49.4
Gohir.A07G097950 Gossypium hirsutum HOM05D003527 ORTHO05D004099 8.4e-24 114.8 197 47.2
Gohir.D07G102300 Gossypium hirsutum HOM05D003527 ORTHO05D004099 8.4e-24 114.8 197 47.2
Sed0026502 Sechium edule HOM05D003527 ORTHO05D004099 1.1e-23 114.4 191 45.5
QL01p032299 Quercus lobata HOM05D003527 ORTHO05D004099 4.2e-23 112.5 196 47.4
CiPaw.13G095400 Carya illinoinensis HOM05D003527 ORTHO05D004099 1.2e-22 110.9 240 41.2
TWI31G0174 Tripterygium wilfordii HOM05D003527 ORTHO05D004099 1.2e-22 110.9 225 42.2
MSTRG.5670 Avicennia marina HOM05D003527 ORTHO05D004099 1.6e-22 110.5 230 40.0
COL.COLO4_18499 Corchorus olitorius HOM05D003527 ORTHO05D004099 1.6e-22 110.5 201 43.8
Peaxi162Scf00165g01520 Petunia axillaris HOM05D003527 ORTHO05D004099 2.1e-22 110.2 222 40.1
TWI79G0031 Tripterygium wilfordii HOM05D003527 ORTHO05D004099 2.7e-22 109.8 215 40.9
MSTRG.19089 Avicennia marina HOM05D003527 ORTHO05D004099 3.5e-22 109.4 231 39.8
MELO3C025924.2 Cucumis melo HOM05D003527 ORTHO05D004099 6.0e-22 108.6 197 46.2
Aqoxy4G02910 Aquilegia oxysepala HOM05D003527 ORTHO05D004099 1.0e-21 107.8 196 44.9
Cpa.g.sc81.162 Carica papaya HOM05D003527 ORTHO05D004099 1.0e-21 107.8 232 41.4
TAR633G1470 Trochodendron aralioides HOM05D003527 ORTHO05D004099 1.3e-21 107.5 189 45.5
Sc12g0001550 Simmondsia chinensis HOM05D003527 ORTHO05D004099 1.8e-21 107.1 230 41.7
Nitab4.5_0001800g0180 Nicotiana tabacum HOM05D003527 ORTHO05D004099 2.3e-21 106.7 237 39.7
Thecc.05G040900 Theobroma cacao HOM05D003527 ORTHO05D004099 3.9e-21 105.9 186 44.6
Migut.J00336 Erythranthe guttata HOM05D003527 ORTHO05D004099 1.1e-20 104.4 187 43.9
Actinidia23946 Actinidia chinensis HOM05D003527 ORTHO05D004099 1.9e-20 103.6 196 46.9
Ah.08g219410 Amaranthus hybridus HOM05D003527 ORTHO05D004099 1.9e-20 103.6 197 46.2
Rhsim13G0083400 Rhododendron simsii HOM05D003527 ORTHO05D004099 3.3e-20 102.8 241 38.6
ECA236G2982 Erigeron canadensis HOM05D003527 ORTHO05D004099 4.3e-20 102.4 196 44.9
Hund04968 Selenicereus undatus HOM05D003527 ORTHO05D004099 4.3e-20 102.4 197 46.7
Aqoxy2G02103 Aquilegia oxysepala HOM05D003527 ORTHO05D004099 5.6e-20 102.1 228 40.8
Eucgr.J02057 Eucalyptus grandis HOM05D003527 ORTHO05D004099 7.4e-20 101.7 196 44.9
Atru.chr8.1961 Acer truncatum HOM05D003527 ORTHO05D004099 9.6e-20 101.3 233 37.8
AUR62001798 Chenopodium quinoa HOM05D003527 ORTHO05D004099 1.3e-19 100.9 196 44.9
GSVIVG01034186001 Vitis vinifera HOM05D003527 ORTHO05D004099 1.3e-19 100.9 231 36.8
EL10Ac7g16007 Beta vulgaris HOM05D003527 ORTHO05D004099 2.1e-19 100.1 197 45.7
Dinv37181 Davidia involucrata HOM05D003527 ORTHO05D004099 2.1e-19 100.1 195 41.5
Oeu024354.1 Olea europaea HOM05D003527 ORTHO05D004099 2.1e-19 100.1 223 39.0
TAR636G1653 Trochodendron aralioides HOM05D003527 ORTHO05D004099 2.1e-19 100.1 189 43.4
vmacro20143 Vaccinium macrocarpon HOM05D003527 ORTHO05D004099 2.1e-19 100.1 233 38.2
AUR62009585 Chenopodium quinoa HOM05D003527 ORTHO05D004099 2.8e-19 99.8 195 44.1
Nn2g10383 Nelumbo nucifera HOM05D003527 ORTHO05D004099 8.1e-19 98.2 231 37.2
DCAR_005975 Daucus carota HOM05D003527 ORTHO05D004099 1.4e-18 97.4 194 46.4
CSS0030599 Camellia sinensis var. sinensis HOM05D003527 ORTHO05D004099 1.8e-18 97.1 226 41.2
Ciclev10012740m.g Citrus clementina HOM05D003527 ORTHO05D004099 1.8e-18 97.1 232 39.2
CANSAT35G0216 Cannabis sativa HOM05D003527 ORTHO05D004099 5.3e-18 95.5 201 41.8
HanXRQChr05g0134511 Helianthus annuus HOM05D003527 ORTHO05D004099 5.3e-18 95.5 197 42.6
Lj3g0018686 Lotus japonicus HOM05D003527 ORTHO05D004099 5.3e-18 95.5 195 42.6
Cc06_g02720 Coffea canephora HOM05D003527 ORTHO05D004099 9.0e-18 94.7 231 37.7
Sabra06G0064100 Salix brachista HOM05D006626 ORTHO05D007352 9.0e-18 94.7 191 41.4
CSS0027996 Camellia sinensis var. sinensis HOM05D003527 ORTHO05D004099 1.5e-17 94.0 196 42.3
Glyma.13G335402 Glycine max HOM05D003527 ORTHO05D004099 3.4e-17 92.8 106 59.4
Potri.006G084400 Populus trichocarpa HOM05D003527 ORTHO05D004099 4.5e-17 92.4 191 41.4
Glyma.03G082900 Glycine max HOM05D003527 ORTHO05D004099 5.8e-17 92.0 183 41.0
QL07p048124 Quercus lobata HOM05D003527 ORTHO05D004099 5.8e-17 92.0 222 39.2
Lsat_1_v5_gn_8_75920 Lactuca sativa HOM05D003527 ORTHO05D004099 7.6e-17 91.7 191 42.9
RcHm_v2.0_Chr3g0466801 Rosa chinensis HOM05D003527 ORTHO05D004099 7.6e-17 91.7 199 39.7
Nn5g26928 Nelumbo nucifera HOM05D003527 ORTHO05D004099 1.3e-16 90.9 198 37.9
Sopen09g005410 Solanum pennellii HOM05D003527 ORTHO05D004099 1.3e-16 90.9 228 38.2
Hma1.2p1_1513F.1_g288070 Hydrangea macrophylla HOM05D003527 ORTHO05D004099 1.7e-16 90.5 216 37.0
Solyc11g066010.2 Solanum lycopersicum HOM05D003527 ORTHO05D004099 1.7e-16 90.5 194 41.2
Sopen11g025750 Solanum pennellii HOM05D003527 ORTHO05D004099 1.7e-16 90.5 194 41.2
Lsat_1_v5_gn_9_23221 Lactuca sativa HOM05D003527 ORTHO05D004099 2.2e-16 90.1 198 40.9
Haze_20770 Corylus avellana HOM05D003527 ORTHO05D004099 2.9e-16 89.7 194 39.7
PGSC0003DMG400000395 Solanum tuberosum HOM05D003527 ORTHO05D004099 2.9e-16 89.7 187 41.2
PSO384G3887 Papaver somniferum HOM05D003527 ORTHO05D004099 3.8e-16 89.4 201 41.3
CiPaw.09G191600 Carya illinoinensis HOM05D003527 ORTHO05D004099 4.9e-16 89.0 235 36.6
FAN09G0639 Fragaria x ananassa HOM05D003527 ORTHO05D004099 4.9e-16 89.0 196 38.3
FAN14G4675 Fragaria x ananassa HOM05D003527 ORTHO05D004099 4.9e-16 89.0 196 38.8
FAN05G0377 Fragaria x ananassa HOM05D003527 ORTHO05D004099 6.5e-16 88.6 196 38.3
FAN09G3248 Fragaria x ananassa HOM05D003527 ORTHO05D004099 6.5e-16 88.6 196 38.3
Sed0011659 Sechium edule HOM05D003527 ORTHO05D004099 6.5e-16 88.6 192 41.1
FvH4_6g13980 Fragaria vesca HOM05D003527 ORTHO05D004099 8.4e-16 88.2 189 38.6
ECA247G3528 Erigeron canadensis HOM05D003527 ORTHO05D004099 1.1e-15 87.8 192 39.6
FvH4_3g35940 Fragaria vesca HOM05D003527 ORTHO05D004099 1.1e-15 87.8 165 41.8
CsaV3_6G016930 Cucumis sativus L. HOM05D003527 ORTHO05D004099 1.4e-15 87.4 149 44.3
COL.COLO4_14818 Corchorus olitorius HOM05D003527 ORTHO05D004099 1.9e-15 87.0 193 40.9
Manes.08G081800 Manihot esculenta HOM05D003527 ORTHO05D004099 3.2e-15 86.3 217 38.2
Manes.09G089700 Manihot esculenta HOM05D003527 ORTHO05D004099 3.2e-15 86.3 230 37.0
Nitab4.5_0007604g0010 Nicotiana tabacum HOM05D003527 ORTHO05D004099 3.2e-15 86.3 238 36.1
FAN02G4097 Fragaria x ananassa HOM05D003527 ORTHO05D004099 4.2e-15 85.9 196 37.8
SalBow3G4662 Salvia bowleyana HOM05D003527 ORTHO05D004099 4.2e-15 85.9 190 38.9
Rhsim05G0191500 Rhododendron simsii HOM05D003527 ORTHO05D004099 7.1e-15 85.1 208 38.0
CAN.G327.10 Capsicum annuum HOM05D003527 ORTHO05D004099 9.3e-15 84.7 192 41.1
Duzib128G0537 Durio zibethinus HOM05D003527 ORTHO05D004099 1.6e-14 84.0 179 42.5
Gohir.A11G326600 Gossypium hirsutum HOM05D003527 ORTHO05D004099 2.7e-14 83.2 191 39.3
Gohir.D11G345500 Gossypium hirsutum HOM05D003527 ORTHO05D004099 2.7e-14 83.2 193 39.9
Lj2A96T67 Lonicera japonica HOM05D003527 ORTHO05D004099 2.7e-14 83.2 187 38.0
TWI74G0830 Tripterygium wilfordii HOM05D003527 ORTHO05D004099 2.7e-14 83.2 213 37.6
Hund18916 Selenicereus undatus HOM05D003527 ORTHO05D004099 3.5e-14 82.8 232 37.9
CsaV3_3G034940 Cucumis sativus L. HOM05D003527 ORTHO05D004099 6.0e-14 82.0 195 41.0
Peaxi162Scf00832g00018 Petunia axillaris HOM05D003527 ORTHO05D004099 7.9e-14 81.6 199 39.7
MBI14_g37823_MAGBIO Magnolia biondii HOM05D003527 ORTHO05D004099 3.0e-13 79.7 185 40.0
Psat0s4138g0040 Pisum sativum HOM05D003527 ORTHO05D004099 3.0e-13 79.7 193 38.3
Actinidia26460 Actinidia chinensis HOM05D003527 ORTHO05D004099 5.1e-13 79.0 149 45.0
VMungo1383G0208 Vigna mungo HOM05D003527 ORTHO05D004099 6.7e-13 78.6 149 43.0
Glyma.08G358400 Glycine max HOM05D003527 ORTHO05D004099 2.5e-12 76.6 149 44.3
PGR004G1376 Punica granatum HOM05D003527 ORTHO05D004099 3.3e-12 76.3 155 39.4
HanXRQChr08g0234711 Helianthus annuus HOM05D003527 ORTHO05D004099 5.7e-12 75.5 192 37.0
PSO339G4025 Papaver somniferum HOM05D003527 ORTHO05D004099 5.7e-12 75.5 150 45.3
Phvul.008G099800 Phaseolus vulgaris HOM05D003527 ORTHO05D004099 1.6e-11 73.9 149 41.6
MBI05_g30238_MAGBIO Magnolia biondii HOM05D003527 ORTHO05D004099 2.8e-11 73.2 189 36.0
Manes.11G131300 Manihot esculenta HOM05D003527 ORTHO05D004099 2.8e-11 73.2 177 37.3
PSO151G0026 Papaver somniferum HOM05D003527 ORTHO05D004099 2.8e-11 73.2 167 38.3
DCAR_014846 Daucus carota HOM05D006626 ORTHO05D007352 4.8e-11 72.4 192 34.9
Duzib093G1072 Durio zibethinus HOM05D003527 ORTHO05D004099 8.2e-11 71.6 143 43.4
Phvul.010G013400 Phaseolus vulgaris HOM05D003527 ORTHO05D004099 1.1e-10 71.2 181 38.7
Glyma.18G176700 Glycine max HOM05D003527 ORTHO05D004099 1.8e-10 70.5 140 42.1
SGA_v2.0_scaffold126G33793 Striga asiatica HOM05D003527 ORTHO05D004099 1.8e-10 70.5 172 37.2
CiPaw.10G145200 Carya illinoinensis HOM05D003527 ORTHO05D004099 2.4e-10 70.1 192 39.1
MELO3C009262.2 Cucumis melo HOM05D003527 ORTHO05D004099 2.4e-10 70.1 176 39.8
Medtr7g059410 Medicago truncatula HOM05D003527 ORTHO05D004099 2.4e-10 70.1 143 42.0
arahy.Tifrunner.gnm1.ann1.95G3UD Arachis hypogaea HOM05D003527 ORTHO05D004099 5.3e-10 68.9 86 55.8
arahy.Tifrunner.gnm1.ann1.QWF1SC Arachis hypogaea HOM05D003527 ORTHO05D004099 5.3e-10 68.9 86 55.8
Nitab4.5_0000761g0070 Nicotiana tabacum HOM05D006626 ORTHO05D007352 6.9e-10 68.6 211 34.1
Duzib170G0558 Durio zibethinus HOM05D003527 ORTHO05D004099 9.0e-10 68.2 175 39.4
CARHR210970 Cardamine hirsuta HOM05D003527 ORTHO05D004099 1.2e-09 67.8 159 39.6
Ca_26083_v3 Cicer arietinum L. HOM05D003527 ORTHO05D004099 1.2e-09 67.8 153 41.2
Nitab4.5_0005575g0040 Nicotiana tabacum HOM05D006626 ORTHO05D007352 1.2e-09 67.8 211 34.1
ATR0559G115 Amborella trichopoda HOM05D003527 ORTHO05D004099 1.5e-09 67.4 204 35.3
CDE02G3270 Ceratophyllum demersum HOM05D003527 ORTHO05D004099 1.5e-09 67.4 188 36.2
Thhalv10014850m.g Eutrema salsugineum HOM05D003527 ORTHO05D004099 2.0e-09 67.0 163 39.3
Psat7g236840 Pisum sativum HOM05D003527 ORTHO05D004099 2.0e-09 67.0 163 38.0
Lalb_Chr03g0035091 Lupinus albus HOM05D003527 ORTHO05D004099 2.6e-09 66.6 150 40.0
TPR.G5587 Trifolium pratense HOM05D003527 ORTHO05D004099 2.6e-09 66.6 189 35.4
CDE08G1604 Ceratophyllum demersum HOM05D003527 ORTHO05D004099 3.4e-09 66.2 191 36.6
ClCG04G008250 Citrullus lanatus HOM05D003527 ORTHO05D004099 4.5e-09 65.9 111 52.3
AT5G02440 Arabidopsis thaliana HOM05D003527 ORTHO05D004099 5.9e-09 65.5 165 38.2
Carub.0006s0124 Capsella rubella HOM05D003527 ORTHO05D004099 5.9e-09 65.5 169 37.9
PSO339G2088 Papaver somniferum HOM05D003527 ORTHO05D004099 5.9e-09 65.5 165 37.6
TPR.G23255 Trifolium pratense HOM05D003527 ORTHO05D004099 7.6e-09 65.1 224 33.0
ATR0680G191 Amborella trichopoda HOM05D003527 ORTHO05D004099 1.0e-08 64.7 196 35.7
AL6G11680 Arabidopsis lyrata HOM05D003527 ORTHO05D004099 1.0e-08 64.7 160 38.8
MELO3C003124.2 Cucumis melo HOM05D003527 ORTHO05D004099 1.0e-08 64.7 111 49.5
C02p00460 Brassica napus HOM05D003527 ORTHO05D004099 1.7e-08 63.9 161 39.1
TAR623G1457 Trochodendron aralioides HOM05D003527 ORTHO05D004099 1.7e-08 63.9 158 38.6
ClCG10G021090 Citrullus lanatus HOM05D003527 ORTHO05D004099 5.0e-08 62.4 242 34.3
Eucgr.K03143 Eucalyptus grandis HOM05D003527 ORTHO05D004099 6.5e-08 62.0 105 47.6
CsaV3_4G024920 Cucumis sativus L. HOM05D003527 ORTHO05D004099 2.5e-07 60.1 106 49.1
BolC2t06046H Brassica oleracea HOM05D003527 ORTHO05D004099 4.2e-07 59.3 154 38.3
Prupe.6G253600 Prunus persica HOM05D003527 ORTHO05D004099 9.3e-07 58.2 235 31.5
LjContig00564g0015687 Lotus japonicus HOM05D003527 ORTHO05D004099 1.2e-06 57.8 144 38.2
MD01G1007300 Malus domestica HOM05D006794 ORTHO05D008322 2.1e-06 57.0 191 29.3
Oeu011402.1 Olea europaea HOM05D003527 ORTHO05D004099 3.6e-06 56.2 146 37.0
vmacro03078 Vaccinium macrocarpon HOM05D003527 ORTHO05D004099 3.6e-06 56.2 137 33.6
THA.LOC104816278 Tarenaya hassleriana HOM05D003527 ORTHO05D004099 7.9e-06 55.1 106 45.3


User provided reference genes

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