Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.0B7H6P Arachis hypogaea HOM05D005154 ORTHO05D006270 2.8e-155 552.0 295 100.0
arahy.Tifrunner.gnm1.ann1.LGH16T Arachis hypogaea HOM05D005154 ORTHO05D006270 2.5e-151 538.9 295 97.6
Glyma.05G176600 Glycine max HOM05D005154 ORTHO05D006270 2.0e-60 236.9 225 66.2
Cfa002623 Carpinus fangiana HOM05D005154 ORTHO05D006270 6.4e-59 231.9 299 52.2
Ca_16517_v3 Cicer arietinum L. HOM05D005154 ORTHO05D006270 1.1e-58 231.1 296 50.0
Haze_24872 Corylus avellana HOM05D005154 ORTHO05D006270 4.2e-58 229.2 243 59.3
Haze_24881 Corylus avellana HOM05D005154 ORTHO05D006270 4.2e-58 229.2 243 59.3
Phvul.002G257700 Phaseolus vulgaris HOM05D005154 ORTHO05D006270 3.9e-56 222.6 277 53.4
QL06p048470 Quercus lobata HOM05D005154 ORTHO05D006270 6.7e-56 221.9 223 60.1
Thecc.01G097800 Theobroma cacao HOM05D005154 ORTHO05D006270 1.9e-55 220.3 304 51.6
Potri.005G073500 Populus trichocarpa HOM05D005154 ORTHO05D006270 3.3e-55 219.5 290 49.0
VMungo0251G0355 Vigna mungo HOM05D005154 ORTHO05D006270 3.3e-55 219.5 229 60.3
Eucgr.I00513 Eucalyptus grandis HOM05D005154 ORTHO05D006270 3.7e-54 216.1 291 51.9
Potri.007G095600 Populus trichocarpa HOM05D005154 ORTHO05D006270 1.4e-53 214.2 296 49.3
Dinv13215 Davidia involucrata HOM05D005154 ORTHO05D006270 1.8e-53 213.8 243 56.4
Lj4g0010322 Lotus japonicus HOM05D005154 ORTHO05D006270 9.0e-53 211.5 286 52.4
COL.COLO4_27276 Corchorus olitorius HOM05D005154 ORTHO05D006270 1.2e-52 211.1 303 49.2
Sabra05G0060000 Salix brachista HOM05D005154 ORTHO05D006270 1.5e-52 210.7 295 45.4
TWI77G0548 Tripterygium wilfordii HOM05D005154 ORTHO05D006270 1.5e-52 210.7 278 50.7
Duzib187G0267 Durio zibethinus HOM05D005154 ORTHO05D006270 2.0e-52 210.3 296 49.7
Sabra07G0078700 Salix brachista HOM05D005154 ORTHO05D006270 4.5e-52 209.1 296 48.3
Manes.12G131800 Manihot esculenta HOM05D005154 ORTHO05D006270 5.8e-52 208.8 240 54.2
Ciclev10026087m.g Citrus clementina HOM05D005154 ORTHO05D006270 1.0e-51 208.0 226 57.1
Nitab4.5_0004570g0010 Nicotiana tabacum HOM05D005154 ORTHO05D006270 6.5e-51 205.3 250 54.4
Rhsim08G0012700 Rhododendron simsii HOM05D005154 ORTHO05D006270 8.4e-51 204.9 286 51.4
Ca_17754_v3 Cicer arietinum L. HOM05D005154 ORTHO05D006270 1.4e-50 204.1 261 54.0
TWI53G2081 Tripterygium wilfordii HOM05D005154 ORTHO05D006270 1.4e-50 204.1 205 58.5
CiPaw.03G144000 Carya illinoinensis HOM05D005154 ORTHO05D006270 1.9e-50 203.8 245 54.3
Actinidia28853 Actinidia chinensis HOM05D005154 ORTHO05D006270 4.2e-50 202.6 274 50.4
Lalb_Chr07g0185271 Lupinus albus HOM05D005154 ORTHO05D006270 7.1e-50 201.8 278 50.7
MD00G1037300 Malus domestica HOM05D005154 ORTHO05D006270 7.1e-50 201.8 238 55.5
Duzib147G1408 Durio zibethinus HOM05D005154 ORTHO05D006270 2.7e-49 199.9 300 49.3
THA.LOC104807680 Tarenaya hassleriana HOM05D005154 ORTHO05D006270 4.6e-49 199.1 223 55.6
Medtr3g086990 Medicago truncatula HOM05D005154 ORTHO05D006270 7.9e-49 198.4 276 47.1
Atru.chr3.1372 Acer truncatum HOM05D005154 ORTHO05D006270 1.0e-48 198.0 308 46.8
CsaV3_6G045320 Cucumis sativus L. HOM05D005154 ORTHO05D006270 1.0e-48 198.0 283 48.1
TPR.G6195 Trifolium pratense HOM05D005154 ORTHO05D006270 1.3e-48 197.6 302 48.0
Solyc11g009070.2 Solanum lycopersicum HOM05D005154 ORTHO05D006270 1.8e-48 197.2 290 49.0
Sopen11g004840 Solanum pennellii HOM05D005154 ORTHO05D006270 1.8e-48 197.2 252 53.2
CAN.G905.36 Capsicum annuum HOM05D005154 ORTHO05D006270 2.3e-48 196.8 254 52.8
PGSC0003DMG400016159 Solanum tuberosum HOM05D005154 ORTHO05D006270 3.0e-48 196.4 252 53.2
CSS0008069 Camellia sinensis var. sinensis HOM05D005154 ORTHO05D006270 8.7e-48 194.9 288 46.9
MELO3C007745.2 Cucumis melo HOM05D005154 ORTHO05D006270 1.5e-47 194.1 226 53.5
Lsat_1_v5_gn_2_66460 Lactuca sativa HOM05D005154 ORTHO05D006270 5.7e-47 192.2 275 48.4
HanXRQChr14g0445521 Helianthus annuus HOM05D005154 ORTHO05D006270 9.7e-47 191.4 278 48.6
vmacro18586 Vaccinium macrocarpon HOM05D005154 ORTHO05D006270 9.7e-47 191.4 299 46.5
MSTRG.3768 Avicennia marina HOM05D005154 ORTHO05D006270 1.3e-46 191.0 281 45.6
Medtr8g089995 Medicago truncatula HOM05D005154 ORTHO05D006270 2.8e-46 189.9 306 47.7
RcHm_v2.0_Chr2g0112751 Rosa chinensis HOM05D005154 ORTHO05D006270 3.7e-46 189.5 242 52.5
Peaxi162Scf00381g00914 Petunia axillaris HOM05D005154 ORTHO05D006270 1.1e-45 188.0 226 54.0
Sed0021389 Sechium edule HOM05D005154 ORTHO05D006270 1.1e-45 188.0 215 56.3
PGR004G1180 Punica granatum HOM05D005154 ORTHO05D006270 1.8e-45 187.2 243 51.9
Gohir.A02G128100 Gossypium hirsutum HOM05D005154 ORTHO05D006270 2.4e-45 186.8 295 48.8
TAR362G0353 Trochodendron aralioides HOM05D005154 ORTHO05D006270 2.4e-45 186.8 252 50.4
Gorai.003G040700 Gossypium raimondii HOM05D005154 ORTHO05D006270 3.1e-45 186.4 295 48.1
TAR633G1456 Trochodendron aralioides HOM05D005154 ORTHO05D006270 3.1e-45 186.4 230 52.2
Sed0002157 Sechium edule HOM05D005154 ORTHO05D006270 6.9e-45 185.3 271 47.2
Sp2g28350 Schrenkiella parvula HOM05D005154 ORTHO05D006270 9.0e-45 184.9 279 43.7
FAN23G2516 Fragaria x ananassa HOM05D005154 ORTHO05D006270 2.6e-44 183.3 225 54.7
FAN28G0994 Fragaria x ananassa HOM05D005154 ORTHO05D006270 2.6e-44 183.3 225 54.7
Nn5g28615 Nelumbo nucifera HOM05D005154 ORTHO05D006270 5.9e-44 182.2 244 49.2
FvH4_1g20490 Fragaria vesca HOM05D005154 ORTHO05D006270 7.7e-44 181.8 225 54.2
Cpa.g.sc55.88 Carica papaya HOM05D005154 ORTHO05D006270 1.0e-43 181.4 166 62.7
Cc07_g14830 Coffea canephora HOM05D005154 ORTHO05D006270 1.7e-43 180.6 222 53.2
ClCG07G017400 Citrullus lanatus HOM05D005154 ORTHO05D006270 2.2e-43 180.3 288 43.8
Migut.L00147 Erythranthe guttata HOM05D005154 ORTHO05D006270 2.2e-43 180.3 201 53.7
SGA_v2.0_scaffold111G31501 Striga asiatica HOM05D005154 ORTHO05D006270 2.2e-43 180.3 233 51.9
MELO3C017601.2 Cucumis melo HOM05D005154 ORTHO05D006270 8.5e-43 178.3 295 43.4
Glyma.08G134000 Glycine max HOM05D005154 ORTHO05D006270 8.5e-43 178.3 241 51.9
Gohir.D03G039500 Gossypium hirsutum HOM05D005154 ORTHO05D006270 1.1e-42 177.9 169 62.7
Aa31LG1G16710 Aethionema arabicum HOM05D005154 ORTHO05D006270 1.4e-42 177.6 269 45.4
CARHR279200 Cardamine hirsuta HOM05D005154 ORTHO05D006270 1.4e-42 177.6 286 43.7
SalBow3G4482 Salvia bowleyana HOM05D005154 ORTHO05D006270 2.5e-42 176.8 224 53.1
SalBow3G3886 Salvia bowleyana HOM05D005154 ORTHO05D006270 3.2e-42 176.4 224 53.1
MBI02_g02178_MAGBIO Magnolia biondii HOM05D005154 ORTHO05D006270 5.5e-42 175.6 266 46.6
Carub.0008s2612 Capsella rubella HOM05D005154 ORTHO05D006270 9.4e-42 174.9 269 45.0
FAN19G2087 Fragaria x ananassa HOM05D005154 ORTHO05D006270 9.4e-42 174.9 232 52.6
Nn1g06223 Nelumbo nucifera HOM05D005154 ORTHO05D006270 1.6e-41 174.1 244 48.0
A02p43800 Brassica napus HOM05D005154 ORTHO05D006270 2.1e-41 173.7 219 51.1
BraA02t09304Z Brassica rapa HOM05D005154 ORTHO05D006270 2.1e-41 173.7 219 51.1
THA.LOC104798878 Tarenaya hassleriana HOM05D005154 ORTHO05D006270 7.9e-41 171.8 208 51.9
MSTRG.2575 Avicennia marina HOM05D005154 ORTHO05D006270 1.0e-40 171.4 287 43.6
AL8G42810 Arabidopsis lyrata HOM05D005154 ORTHO05D006270 1.4e-40 171.0 279 42.7
Thhalv10004756m.g Eutrema salsugineum HOM05D005154 ORTHO05D006270 1.4e-40 171.0 264 43.2
PSO210G3532 Papaver somniferum HOM05D005154 ORTHO05D006270 2.3e-40 170.2 240 49.2
Oeu001799.2 Olea europaea HOM05D005154 ORTHO05D006270 6.7e-40 168.7 355 37.5
Psat5g090640 Pisum sativum HOM05D005154 ORTHO05D006270 6.7e-40 168.7 258 42.6
BolC2t12462H Brassica oleracea HOM05D005154 ORTHO05D006270 1.1e-39 167.9 190 53.7
PSO447G0271 Papaver somniferum HOM05D005154 ORTHO05D006270 1.1e-39 167.9 240 49.2
BolC3t18339H Brassica oleracea HOM05D002046 ORTHO05D002180 1.5e-39 167.5 279 42.7
SGA_v2.0_scaffold335G49113 Striga asiatica HOM05D005154 ORTHO05D006270 1.5e-39 167.5 274 43.1
Actinidia20002 Actinidia chinensis HOM05D005154 ORTHO05D006270 2.0e-39 167.2 212 53.3
C03p60830 Brassica napus HOM05D005154 ORTHO05D006270 2.5e-39 166.8 279 41.9
BcaC01g02761 Brassica carinata HOM05D005154 ORTHO05D006270 3.3e-39 166.4 279 42.3
Migut.H02344 Erythranthe guttata HOM05D005154 ORTHO05D006270 4.3e-39 166.0 218 51.8
Prupe.6G191100 Prunus persica HOM05D005154 ORTHO05D006270 4.3e-39 166.0 224 50.9
Hma1.2p1_0019F.1_g013610 Hydrangea macrophylla HOM05D005154 ORTHO05D006270 1.3e-38 164.5 242 47.5
Hund13599 Selenicereus undatus HOM05D005154 ORTHO05D006270 1.3e-38 164.5 199 52.8
ClCG01G018660 Citrullus lanatus HOM05D005154 ORTHO05D006270 1.7e-38 164.1 312 39.4
A06p32100 Brassica napus HOM05D005154 ORTHO05D006270 8.2e-38 161.8 280 40.4
BraA06t26139Z Brassica rapa HOM05D005154 ORTHO05D006270 8.2e-38 161.8 280 40.4
AUR62001985 Chenopodium quinoa HOM05D005154 ORTHO05D006270 1.8e-37 160.6 203 50.7
CDE05G0874 Ceratophyllum demersum HOM05D005154 ORTHO05D006270 9.1e-37 158.3 237 46.8
SalBow5G0552 Salvia bowleyana HOM05D005154 ORTHO05D006270 1.5e-36 157.5 222 48.6
ECA238G2162 Erigeron canadensis HOM05D005154 ORTHO05D001925 3.4e-36 156.4 152 58.6
Oeu032406.1 Olea europaea HOM05D005154 ORTHO05D006270 3.4e-36 156.4 403 33.0
ATR1133G017 Amborella trichopoda HOM05D005154 ORTHO05D006270 1.7e-35 154.1 143 61.5
C02p63960 Brassica napus HOM05D005154 ORTHO05D006270 1.7e-35 154.1 207 48.3
Sed0027637 Sechium edule HOM05D005154 ORTHO05D006270 2.2e-35 153.7 206 48.5
AT5G65250 Arabidopsis thaliana HOM05D005154 ORTHO05D006270 6.5e-35 152.1 282 39.0
Aqoxy6G00745 Aquilegia oxysepala HOM05D005154 ORTHO05D006270 8.5e-35 151.8 285 42.5
EL10Ac6g15137 Beta vulgaris HOM05D005154 ORTHO05D006270 8.5e-35 151.8 203 48.8
HPP92_016780 Vanilla planifolia HOM05D005154 ORTHO05D006270 1.9e-34 150.6 152 57.9
MBI02_g27971_MAGBIO Magnolia biondii HOM05D005154 ORTHO05D006270 3.6e-33 146.4 241 44.4
Sc03g0000070 Simmondsia chinensis HOM05D005154 ORTHO05D006270 7.9e-33 145.2 275 39.3
unitig_899.g14551 Utricularia gibba HOM05D005154 ORTHO05D006270 7.9e-33 145.2 211 47.9
Os08g0484800 Oryza sativa ssp. japonica HOM05D005154 ORTHO05D006270 6.7e-32 142.1 161 51.6
unitig_748.g8652 Utricularia gibba HOM05D005154 ORTHO05D006270 1.1e-31 141.4 201 45.3
GSVIVG01006633001 Vitis vinifera HOM05D005154 ORTHO05D006270 2.0e-31 140.6 128 64.1
Psat7g056800 Pisum sativum HOM05D005154 ORTHO05D006270 2.6e-31 140.2 145 58.6
Lj4A897G79 Lonicera japonica HOM05D005154 ORTHO05D006270 7.4e-31 138.7 141 58.9
BcaB07g34227 Brassica carinata HOM05D005154 ORTHO05D006270 2.8e-30 136.7 114 64.9
SEGI_40329 Sequoiadendron giganteum HOM05D005154 ORTHO05D006270 4.8e-30 136.0 190 45.3
AUR62003820 Chenopodium quinoa HOM05D005154 ORTHO05D006270 1.1e-29 134.8 141 55.3
DCAR_014210 Daucus carota HOM05D005154 ORTHO05D006270 1.4e-29 134.4 140 54.3
CsaV3_UNG158170 Cucumis sativus L. HOM05D001364 ORTHO05D006270 1.8e-29 134.0 200 45.5
PGR102G1872 Punica granatum HOM05D005154 ORTHO05D006270 1.5e-26 124.4 110 65.5
CiPaw.04G102700 Carya illinoinensis HOM05D005154 ORTHO05D006270 9.4e-26 121.7 213 44.6
CsaV3_4G004630 Cucumis sativus L. HOM05D005154 ORTHO05D006270 1.4e-24 117.9 119 59.7
BcaNung07054 Brassica carinata HOM05D005154 ORTHO05D006270 1.5e-23 114.4 93 65.6
Lj2C542T5 Lonicera japonica HOM05D005154 ORTHO05D006270 4.4e-23 112.8 149 49.0
MD01G1033600 Malus domestica HOM05D005154 ORTHO05D006270 5.9e-20 102.4 119 54.6
CsaV3_UNG129000 Cucumis sativus L. HOM05D005154 ORTHO05D006270 5.0e-19 99.4 102 58.8
CDE05G3641 Ceratophyllum demersum HOM05D005154 ORTHO05D006270 7.2e-18 95.5 135 46.7
CDE03G0147 Ceratophyllum demersum HOM05D005154 ORTHO05D006270 3.0e-16 90.1 103 49.5
Pp3c10_24690 Physcomitrium patens HOM05D005154 ORTHO05D006270 3.0e-16 90.1 102 49.0
Mapoly0112s0020 Marchantia polymorpha HOM05D005154 ORTHO05D006270 1.5e-15 87.8 106 50.9
CsaV3_UNG223540 Cucumis sativus L. HOM05D005154 ORTHO05D006270 9.7e-15 85.1 117 51.3
CBR_g50776 Chara braunii HOM05D002289 ORTHO05D004369 2.8e-14 83.6 132 40.2
CiPaw.11G071200 Carya illinoinensis HOM05D005154 ORTHO05D006270 1.8e-13 80.9 61 75.4
Lj2C542T6 Lonicera japonica HOM05D005154 ORTHO05D006270 2.4e-13 80.5 88 60.2
SMO171G0129 Selaginella moellendorffii HOM05D005154 ORTHO05D006270 1.6e-12 77.8 103 40.8
Nitab4.5_0000743g0090 Nicotiana tabacum HOM05D005154 ORTHO05D006270 7.7e-12 75.5 78 53.8
AagrBONN_evm.TU.Sc2ySwM_344.1569 Anthoceros agrestis HOM05D005154 ORTHO05D006270 1.0e-11 75.1 124 38.7
Actinidia28244 Actinidia chinensis HOM05D005154 ORTHO05D006270 9.4e-10 68.6 119 46.2
CiPaw.02G062100 Carya illinoinensis HOM05D005154 ORTHO05D006270 1.2e-09 68.2 46 82.6
CDE06G0254 Ceratophyllum demersum HOM05D006096 ORTHO05D007775 6.8e-08 62.4 120 35.0
MBI02_g48054_MAGBIO Magnolia biondii HOM05D005154 ORTHO05D006270 2.6e-07 60.5 43 79.1


User provided reference genes

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