Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.09GV4T Arachis hypogaea HOM05D005558 ORTHO05D006832 7.0e-101 370.5 177 100.0
arahy.Tifrunner.gnm1.ann1.H4MLSW Arachis hypogaea HOM05D005558 ORTHO05D006832 7.0e-101 370.5 177 100.0
Glyma.07G221200 Glycine max HOM05D005558 ORTHO05D006832 1.0e-88 330.1 177 89.3
Psat7g129880 Pisum sativum HOM05D005558 ORTHO05D006832 2.8e-86 322.0 177 86.4
Ca_18758_v3 Cicer arietinum L. HOM05D005558 ORTHO05D006832 9.1e-85 317.0 178 85.4
Lj4g0004166 Lotus japonicus HOM05D005558 ORTHO05D006832 1.6e-84 316.2 177 85.9
Medtr4g084120 Medicago truncatula HOM05D005558 ORTHO05D006832 1.7e-83 312.8 177 85.3
Phvul.002G097800 Phaseolus vulgaris HOM05D005558 ORTHO05D006832 2.9e-83 312.0 164 91.5
TPR.G20977 Trifolium pratense HOM05D005558 ORTHO05D006832 3.8e-83 311.6 177 83.1
Lalb_Chr05g0219661 Lupinus albus HOM05D005558 ORTHO05D006832 6.3e-78 294.3 146 92.5
arahy.Tifrunner.gnm1.ann1.8D2970 Arachis hypogaea HOM05D005558 ORTHO05D006832 8.6e-75 283.9 150 86.0
arahy.Tifrunner.gnm1.ann1.GVHP98 Arachis hypogaea HOM05D005558 ORTHO05D006832 8.6e-75 283.9 150 86.0
Glyma.15G161100 Glycine max HOM05D005558 ORTHO05D006832 8.6e-75 283.9 180 76.7
Prupe.5G000800 Prunus persica HOM05D005558 ORTHO05D006832 1.9e-74 282.7 156 82.7
Gohir.A05G177400 Gossypium hirsutum HOM05D005558 ORTHO05D006832 2.5e-74 282.3 178 77.5
Gorai.009G185800 Gossypium raimondii HOM05D005558 ORTHO05D006832 2.5e-74 282.3 175 77.1
Nn6g31548 Nelumbo nucifera HOM05D005558 ORTHO05D006832 2.5e-74 282.3 167 77.2
Sc17g0004140 Simmondsia chinensis HOM05D005558 ORTHO05D006832 2.5e-74 282.3 146 86.3
ClCG11G019260 Citrullus lanatus HOM05D005558 ORTHO05D006832 3.3e-74 282.0 150 84.7
Hma1.2p1_0914F.1_g236230 Hydrangea macrophylla HOM05D005558 ORTHO05D006832 5.6e-74 281.2 150 83.3
CiPaw.08G079200 Carya illinoinensis HOM05D005558 ORTHO05D006832 7.3e-74 280.8 181 73.5
Nitab4.5_0003423g0040 Nicotiana tabacum HOM05D005558 ORTHO05D006832 7.3e-74 280.8 150 84.7
PGR083G0867 Punica granatum HOM05D005558 ORTHO05D006832 7.3e-74 280.8 165 80.6
Manes.18G000600 Manihot esculenta HOM05D005558 ORTHO05D006832 1.2e-73 280.0 150 86.7
Gohir.D05G180800 Gossypium hirsutum HOM05D005558 ORTHO05D006832 1.6e-73 279.6 178 77.0
MSTRG.24533 Avicennia marina HOM05D005558 ORTHO05D006832 2.1e-73 279.3 143 87.4
Ah.08g212310 Amaranthus hybridus HOM05D005558 ORTHO05D006832 2.8e-73 278.9 163 77.9
CsaV3_4G037850 Cucumis sativus L. HOM05D005558 ORTHO05D006832 2.8e-73 278.9 150 84.0
Hund05339 Selenicereus undatus HOM05D005558 ORTHO05D006832 2.8e-73 278.9 143 86.7
Cc10_g00070 Coffea canephora HOM05D005558 ORTHO05D006832 3.6e-73 278.5 146 84.9
MD06G1057400 Malus domestica HOM05D005558 ORTHO05D006832 3.6e-73 278.5 156 82.7
PSO170G6225 Papaver somniferum HOM05D005558 ORTHO05D006832 3.6e-73 278.5 183 73.8
EL10Ac7g17248 Beta vulgaris HOM05D005558 ORTHO05D006832 4.7e-73 278.1 155 82.6
Cfa014170 Carpinus fangiana HOM05D005558 ORTHO05D006832 4.7e-73 278.1 156 81.4
RcHm_v2.0_Chr7g0217691 Rosa chinensis HOM05D005558 ORTHO05D006832 4.7e-73 278.1 156 82.7
Carub.0001s2052 Capsella rubella HOM05D005558 ORTHO05D006832 6.1e-73 277.7 152 82.2
Potri.002G001500 Populus trichocarpa HOM05D005558 ORTHO05D006832 6.1e-73 277.7 150 84.7
Lalb_Chr15g0083971 Lupinus albus HOM05D005558 ORTHO05D006832 8.0e-73 277.3 181 75.1
Aqoxy5G00965 Aquilegia oxysepala HOM05D005558 ORTHO05D006832 1.0e-72 276.9 145 82.8
TWI12G1391 Tripterygium wilfordii HOM05D005558 ORTHO05D006832 1.0e-72 276.9 152 84.9
CSS0024776 Camellia sinensis var. sinensis HOM05D005558 ORTHO05D006832 1.4e-72 276.6 184 71.7
COL.COLO4_12262 Corchorus olitorius HOM05D005558 ORTHO05D006832 1.4e-72 276.6 164 79.9
QL02p016334 Quercus lobata HOM05D005558 ORTHO05D006832 1.8e-72 276.2 155 81.3
PSO017G1036 Papaver somniferum HOM05D005558 ORTHO05D006832 2.3e-72 275.8 183 73.8
CANSAT25G0089 Cannabis sativa HOM05D005558 ORTHO05D006832 3.1e-72 275.4 156 80.1
Lsat_1_v5_gn_2_2740 Lactuca sativa HOM05D005558 ORTHO05D006832 3.1e-72 275.4 169 76.3
Sopen12g031670 Solanum pennellii HOM05D005558 ORTHO05D006832 3.1e-72 275.4 156 80.8
Thecc.08G097300 Theobroma cacao HOM05D005558 ORTHO05D006832 3.1e-72 275.4 166 77.7
PGSC0003DMG400029397 Solanum tuberosum HOM05D005558 ORTHO05D006832 4.0e-72 275.0 145 84.8
THA.LOC104813721 Tarenaya hassleriana HOM05D005558 ORTHO05D006832 4.0e-72 275.0 153 82.4
AL1G34110 Arabidopsis lyrata HOM05D005558 ORTHO05D006832 5.2e-72 274.6 152 82.2
CAN.G208.43 Capsicum annuum HOM05D005558 ORTHO05D006832 5.2e-72 274.6 156 80.8
MD07G1016000 Malus domestica HOM05D005558 ORTHO05D006832 5.2e-72 274.6 149 84.6
Rhsim06G0000500 Rhododendron simsii HOM05D005558 ORTHO05D006832 6.8e-72 274.2 181 72.4
Solyc12g095770.2 Solanum lycopersicum HOM05D005558 ORTHO05D006832 8.9e-72 273.9 156 80.1
BcaB07g32099 Brassica carinata HOM05D005558 ORTHO05D006832 1.2e-71 273.5 154 81.8
BraA06t24816Z Brassica rapa HOM05D005558 ORTHO05D006832 1.5e-71 273.1 154 81.8
Duzib116G0928 Durio zibethinus HOM05D005558 ORTHO05D006832 2.0e-71 272.7 164 78.0
A06p17130 Brassica napus HOM05D005558 ORTHO05D006832 2.6e-71 272.3 177 72.3
HPP92_021698 Vanilla planifolia HOM05D005558 ORTHO05D006832 2.6e-71 272.3 141 84.4
GSVIVG01013466001 Vitis vinifera HOM05D005558 ORTHO05D006832 2.6e-71 272.3 149 81.9
ATR0605G185 Amborella trichopoda HOM05D005558 ORTHO05D006832 3.4e-71 271.9 165 75.2
BcaC05g26014 Brassica carinata HOM05D005558 ORTHO05D006832 3.4e-71 271.9 154 81.2
CARHR021510 Cardamine hirsuta HOM05D005558 ORTHO05D006832 3.4e-71 271.9 152 81.6
Os02g0187500 Oryza sativa ssp. japonica HOM05D005558 ORTHO05D006832 7.5e-71 270.8 142 85.2
FvH4_5g26780 Fragaria vesca HOM05D005558 ORTHO05D006832 2.2e-70 269.2 155 80.6
FAN18G4437 Fragaria x ananassa HOM05D005558 ORTHO05D006832 2.2e-70 269.2 155 80.6
FAN04G1408 Fragaria x ananassa HOM05D005558 ORTHO05D006832 2.9e-70 268.9 155 80.6
AT1G21065 Arabidopsis thaliana HOM05D005558 ORTHO05D006832 4.9e-70 268.1 152 79.6
Migut.N03003 Erythranthe guttata HOM05D005558 ORTHO05D006832 4.9e-70 268.1 143 82.5
FAN08G1374 Fragaria x ananassa HOM05D005558 ORTHO05D006832 6.4e-70 267.7 155 80.0
Sp1g18730 Schrenkiella parvula HOM05D005558 ORTHO05D006832 1.1e-69 266.9 151 80.8
CiPaw.07G129900 Carya illinoinensis HOM05D005558 ORTHO05D006832 1.4e-69 266.5 153 81.0
Thhalv10008709m.g Eutrema salsugineum HOM05D005558 ORTHO05D006832 1.9e-69 266.2 153 80.4
Zm00001eb234660 Zea mays HOM05D005558 ORTHO05D006832 1.9e-69 266.2 142 81.7
BcaC07g39074 Brassica carinata HOM05D005558 ORTHO05D006832 3.2e-69 265.4 153 79.7
BcaB03g12837 Brassica carinata HOM05D005558 ORTHO05D006832 7.0e-69 264.2 153 79.7
BolC8t49687H Brassica oleracea HOM05D005558 ORTHO05D006832 7.0e-69 264.2 153 79.7
A08p29100 Brassica napus HOM05D005558 ORTHO05D006832 9.2e-69 263.8 153 79.7
BraA08t34846Z Brassica rapa HOM05D005558 ORTHO05D006832 9.2e-69 263.8 153 79.7
Eucgr.F01955 Eucalyptus grandis HOM05D005558 ORTHO05D006832 1.6e-68 263.1 179 72.6
Peaxi162Scf00064g01430 Petunia axillaris HOM05D005558 ORTHO05D006832 2.0e-68 262.7 156 78.2
SGA_v2.0_scaffold19G08925 Striga asiatica HOM05D005558 ORTHO05D006832 2.0e-68 262.7 150 80.0
Zm00001eb387340 Zea mays HOM05D005558 ORTHO05D006832 5.6e-66 254.6 150 75.3
SEGI_40156 Sequoiadendron giganteum HOM05D005558 ORTHO05D006832 1.2e-65 253.4 149 77.2
HPP92_017798 Vanilla planifolia HOM05D005558 ORTHO05D006832 1.2e-65 253.4 166 72.3
Mapoly0002s0034 Marchantia polymorpha HOM05D005558 ORTHO05D006832 3.6e-65 251.9 140 77.9
Pp3c1_31360 Physcomitrium patens HOM05D005558 ORTHO05D006832 6.2e-65 251.1 147 74.8
SMO259G0018 Selaginella moellendorffii HOM05D005558 ORTHO05D006832 4.0e-64 248.4 140 75.7
ECA238G0376 Erigeron canadensis HOM05D005558 ORTHO05D006832 6.4e-62 241.1 126 86.5
TAR381G1539 Trochodendron aralioides HOM05D005558 ORTHO05D006832 2.4e-61 239.2 158 76.6
Nitab4.5_0001309g0160 Nicotiana tabacum HOM05D005558 ORTHO05D006832 4.1e-61 238.4 127 84.3
MELO3C017079.2 Cucumis melo HOM05D005558 ORTHO05D006832 2.7e-60 235.7 119 88.2
Sabra02G0001000 Salix brachista HOM05D005558 ORTHO05D006832 2.3e-59 232.6 144 76.4
HanXRQChr14g0427511 Helianthus annuus HOM05D005558 ORTHO05D006832 3.9e-59 231.9 162 72.2
AUR62041000 Chenopodium quinoa HOM05D005558 ORTHO05D006832 6.6e-59 231.1 132 78.8
Atru.chr13.17 Acer truncatum HOM05D005558 ORTHO05D006832 1.9e-58 229.6 132 81.1
Ciclev10002303m.g Citrus clementina HOM05D005558 ORTHO05D006832 2.5e-58 229.2 127 83.5
Actinidia15539 Actinidia chinensis HOM05D005558 ORTHO05D006832 3.3e-58 228.8 122 85.2
VMungo0251G0776 Vigna mungo HOM05D005558 ORTHO05D006832 2.1e-57 226.1 124 87.1
Sed0017561 Sechium edule HOM05D005558 ORTHO05D006832 8.1e-57 224.2 126 81.7
Cre17.g739300 Chlamydomonas reinhardtii HOM05D005558 ORTHO05D006832 2.3e-56 222.6 140 70.0
BolC5t30678H Brassica oleracea HOM05D000370 ORTHO05D006832 5.2e-56 221.5 140 74.3
C08p20580 Brassica napus HOM05D005558 ORTHO05D006832 2.6e-55 219.2 131 78.6
Prupe.5G000700 Prunus persica HOM05D005558 ORTHO05D006832 3.4e-55 218.8 120 83.3
Phvul.009G240200 Phaseolus vulgaris HOM05D005558 ORTHO05D006832 3.7e-54 215.3 143 76.2
Lj4C814G4 Lonicera japonica HOM05D005558 ORTHO05D006832 5.4e-53 211.5 162 64.8
SGA_v2.0_scaffold25G11031 Striga asiatica HOM05D005558 ORTHO05D006832 1.6e-52 209.9 129 76.7
Dinv05517 Davidia involucrata HOM05D005558 ORTHO05D006832 3.5e-52 208.8 115 85.2
Os06g0638200 Oryza sativa ssp. japonica HOM05D005558 ORTHO05D006832 5.8e-47 191.4 99 84.8
SMO203G0115 Selaginella moellendorffii HOM05D005558 ORTHO05D006832 1.1e-42 177.2 151 53.6
vmacro21735 Vaccinium macrocarpon HOM05D005558 ORTHO05D006832 2.8e-41 172.6 92 87.0
TAR376G0283 Trochodendron aralioides HOM05D005558 ORTHO05D006832 3.6e-41 172.2 94 85.1
Pp3c2_25680 Physcomitrium patens HOM05D005558 ORTHO05D006832 2.4e-40 169.5 139 55.4
Peaxi162Scf00064g01422 Petunia axillaris HOM05D005558 ORTHO05D006832 5.3e-40 168.3 127 64.6
SEGI_39286 Sequoiadendron giganteum HOM05D005558 ORTHO05D006832 9.0e-40 167.5 153 52.3
Oeu000735.2 Olea europaea HOM05D005558 ORTHO05D006832 2.9e-38 162.5 87 83.9
Mapoly0065s0101 Marchantia polymorpha HOM05D005558 ORTHO05D006832 1.9e-37 159.8 140 53.6
Cre01.g043100 Chlamydomonas reinhardtii HOM05D005558 ORTHO05D006832 1.2e-36 157.1 163 46.6
Haze_22894 Corylus avellana HOM05D005558 ORTHO05D006832 2.1e-36 156.4 156 49.4
Cfa023908 Carpinus fangiana HOM05D005558 ORTHO05D006832 4.3e-34 148.7 140 48.6
CBR_g570 Chara braunii HOM05D005558 ORTHO05D006832 1.7e-30 136.7 85 70.6
SalBow6G6347 Salvia bowleyana HOM05D005558 ORTHO05D006832 1.7e-30 136.7 142 52.1
CDE04G3086 Ceratophyllum demersum HOM05D000433 ORTHO05D000443 2.4e-29 132.9 135 48.1
AL8G17720 Arabidopsis lyrata HOM05D005558 ORTHO05D006832 1.9e-26 123.2 72 80.6
C05p19780 Brassica napus HOM05D005558 ORTHO05D006832 4.3e-26 122.1 59 88.1
MCO09G054 Micromonas commoda HOM05D005558 ORTHO05D006832 9.6e-26 120.9 177 39.0
AL5G16180 Arabidopsis lyrata HOM05D005558 ORTHO05D006832 3.7e-25 119.0 70 80.0
HPP92_021704 Vanilla planifolia HOM05D005558 ORTHO05D006832 2.2e-22 109.8 118 48.3
BcaC07g39073 Brassica carinata HOM05D005558 ORTHO05D006832 1.4e-21 107.1 53 86.8
Aa31LG7G5210 Aethionema arabicum HOM05D005558 ORTHO05D006832 1.2e-15 87.4 151 39.1
AagrBONN_evm.TU.Sc2ySwM_344.2923 Anthoceros agrestis HOM05D005558 ORTHO05D006832 1.3e-14 84.0 82 51.2
PRCOL_00001425 Prasinoderma coloniale HOM05D005558 ORTHO05D006832 8.4e-14 81.3 166 30.1
Cre09.g396850 Chlamydomonas reinhardtii HOM05D005558 ORTHO05D034498 1.9e-10 70.1 141 32.6
Cpa.g.sc36.93 Carica papaya HOM05D005558 ORTHO05D006832 9.7e-10 67.8 31 90.3
DCAR_022964 Daucus carota HOM05D005558 ORTHO05D006832 3.7e-09 65.9 79 48.1
Cpa.g.sc36.94 Carica papaya HOM05D005558 ORTHO05D006832 1.2e-07 60.8 95 38.9
PRCOL_00001511 Prasinoderma coloniale HOM05D005558 ORTHO05D034498 7.7e-07 58.2 155 27.1


User provided reference genes

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