Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.087IU6 Arachis hypogaea HOM05D006614 ORTHO05D008217 0.0e+00 1182.5 628 100.0
arahy.Tifrunner.gnm1.ann1.UH0U35 Arachis hypogaea HOM05D006614 ORTHO05D008217 0.0e+00 1164.8 628 98.6
Glyma.14G066300 Glycine max HOM05D006614 ORTHO05D008217 9.0e-252 873.6 630 73.2
Ca_05900_v3 Cicer arietinum L. HOM05D006614 ORTHO05D008217 3.7e-245 851.7 643 70.9
TPR.G25839 Trifolium pratense HOM05D006614 ORTHO05D008217 3.7e-245 851.7 643 69.7
Psat2g179000 Pisum sativum HOM05D006614 ORTHO05D008217 4.0e-244 848.2 645 70.1
Phvul.008G231100 Phaseolus vulgaris HOM05D006614 ORTHO05D008217 1.2e-243 846.7 631 70.4
Lalb_Chr17g0346371 Lupinus albus HOM05D006614 ORTHO05D008217 5.8e-243 844.3 636 69.3
LjContig00141g0022614 Lotus japonicus HOM05D006614 ORTHO05D008217 6.5e-242 840.9 627 71.5
Medtr5g080700 Medicago truncatula HOM05D006614 ORTHO05D008217 3.9e-239 831.6 644 68.2
VMungo0647G0674 Vigna mungo HOM05D006614 ORTHO05D008217 1.0e-234 817.0 634 68.6
Thecc.07G117000 Theobroma cacao HOM05D006614 ORTHO05D008217 3.2e-201 705.7 618 63.1
COL.COLO4_17543 Corchorus olitorius HOM05D006614 ORTHO05D008217 5.5e-201 704.9 618 62.3
Cpa.g.sc77.8 Carica papaya HOM05D006614 ORTHO05D008217 4.0e-199 698.7 603 60.7
Sed0001562 Sechium edule HOM05D006614 ORTHO05D008217 3.4e-198 695.7 625 60.2
Dinv14994 Davidia involucrata HOM05D006614 ORTHO05D008217 5.7e-198 694.9 615 60.8
CSS0027020 Camellia sinensis var. sinensis HOM05D006614 ORTHO05D008217 4.8e-197 691.8 620 61.1
ClCG11G017450 Citrullus lanatus HOM05D006614 ORTHO05D008217 6.3e-197 691.4 618 62.8
Manes.15G094800 Manihot esculenta HOM05D006614 ORTHO05D008217 4.1e-196 688.7 553 64.9
TAR375G0652 Trochodendron aralioides HOM05D006614 ORTHO05D008217 1.6e-195 686.8 646 58.7
PGR142G0467 Punica granatum HOM05D006614 ORTHO05D008217 1.3e-194 683.7 546 66.5
Gohir.D07G233600 Gossypium hirsutum HOM05D006614 ORTHO05D008217 5.0e-194 681.8 599 64.4
MELO3C025640.2 Cucumis melo HOM05D006614 ORTHO05D008217 1.5e-193 680.2 626 60.7
TWI38G0322 Tripterygium wilfordii HOM05D006614 ORTHO05D008217 2.5e-193 679.5 628 60.4
Duzib213G0629 Durio zibethinus HOM05D006614 ORTHO05D008217 3.3e-193 679.1 567 65.1
Gorai.001G269000 Gossypium raimondii HOM05D006614 ORTHO05D008217 9.5e-193 677.6 571 65.7
Prupe.4G164700 Prunus persica HOM05D006614 ORTHO05D008217 2.1e-192 676.4 602 64.0
GSVIVG01014198001 Vitis vinifera HOM05D006614 ORTHO05D008217 2.1e-192 676.4 548 63.3
Gohir.A07G226400 Gossypium hirsutum HOM05D006614 ORTHO05D008217 2.8e-192 676.0 570 65.6
Sc16g0007600 Simmondsia chinensis HOM05D006614 ORTHO05D008217 8.0e-192 674.5 599 64.1
CiPaw.11G160300 Carya illinoinensis HOM05D006614 ORTHO05D008217 4.0e-191 672.2 564 66.1
MD03G1243600 Malus domestica HOM05D006614 ORTHO05D008217 4.0e-191 672.2 619 61.1
THA.LOC104822565 Tarenaya hassleriana HOM05D006614 ORTHO05D008217 8.9e-191 671.0 634 59.8
CsaV3_4G033120 Cucumis sativus L. HOM05D006614 ORTHO05D008217 1.2e-190 670.6 615 57.4
DCAR_021025 Daucus carota HOM05D006614 ORTHO05D008217 4.4e-190 668.7 622 57.6
FvH4_3g18290 Fragaria vesca HOM05D006614 ORTHO05D008217 3.7e-189 665.6 625 56.8
Rhsim06G0208100 Rhododendron simsii HOM05D006614 ORTHO05D008217 4.9e-189 665.2 619 58.2
FAN16G2994 Fragaria x ananassa HOM05D006614 ORTHO05D008217 6.3e-189 664.8 625 56.6
Hma1.2p1_0290F.1_g114830 Hydrangea macrophylla HOM05D006614 ORTHO05D008217 6.3e-189 664.8 621 59.4
Actinidia12578 Actinidia chinensis HOM05D006614 ORTHO05D008217 8.3e-189 664.5 546 61.4
Lj1P829T27 Lonicera japonica HOM05D006614 ORTHO05D008217 1.8e-188 663.3 619 60.3
RcHm_v2.0_Chr5g0030921 Rosa chinensis HOM05D006614 ORTHO05D008217 3.1e-188 662.5 625 58.9
FAN11G1715 Fragaria x ananassa HOM05D006614 ORTHO05D008217 4.1e-188 662.1 625 56.3
Thecc.07G116400 Theobroma cacao HOM05D006614 ORTHO05D008217 4.1e-188 662.1 524 67.0
Nitab4.5_0006953g0010 Nicotiana tabacum HOM05D006614 ORTHO05D008217 3.5e-187 659.1 621 55.4
HanXRQChr15g0476201 Helianthus annuus HOM05D006614 ORTHO05D008217 1.0e-186 657.5 625 58.4
Nitab4.5_0003565g0010 Nicotiana tabacum HOM05D006614 ORTHO05D008217 1.7e-186 656.8 630 54.9
Peaxi162Scf00111g01423 Petunia axillaris HOM05D006614 ORTHO05D008217 1.7e-186 656.8 571 59.0
CANSAT35G1108 Cannabis sativa HOM05D006614 ORTHO05D008217 2.9e-186 656.0 640 57.8
Cc05_g11080 Coffea canephora HOM05D006614 ORTHO05D008217 3.8e-186 655.6 623 59.1
Migut.M00728 Erythranthe guttata HOM05D006614 ORTHO05D008217 3.8e-186 655.6 573 60.9
vmacro23466 Vaccinium macrocarpon HOM05D006614 ORTHO05D008217 7.3e-185 651.4 622 55.3
Cfa019566 Carpinus fangiana HOM05D006614 ORTHO05D008217 6.1e-184 648.3 550 64.7
Haze_09323 Corylus avellana HOM05D006614 ORTHO05D008217 2.3e-183 646.4 554 63.7
MSTRG.6677 Avicennia marina HOM05D006614 ORTHO05D008217 4.0e-183 645.6 629 57.4
QL12p002313 Quercus lobata HOM05D006614 ORTHO05D008217 5.2e-183 645.2 560 63.2
Ah.09g230960 Amaranthus hybridus HOM05D006614 ORTHO05D008217 6.4e-181 638.3 610 59.8
Sp3g13110 Schrenkiella parvula HOM05D006614 ORTHO05D008217 3.2e-180 636.0 626 56.2
PGSC0003DMG400046940 Solanum tuberosum HOM05D006614 ORTHO05D008217 5.4e-180 635.2 620 57.4
Sopen07g030680 Solanum pennellii HOM05D006614 ORTHO05D008217 2.0e-179 633.3 616 56.7
ECA240G1555 Erigeron canadensis HOM05D006614 ORTHO05D008217 2.7e-179 632.9 623 57.8
Psat0s3066g0080 Pisum sativum HOM05D006614 ORTHO05D008217 4.6e-179 632.1 504 67.7
Potri.001G390600 Populus trichocarpa HOM05D006614 ORTHO05D008217 4.6e-179 632.1 625 55.8
AT3G14900 Arabidopsis thaliana HOM05D006614 ORTHO05D008217 6.0e-179 631.7 557 60.5
Solyc07g062440.1 Solanum lycopersicum HOM05D006614 ORTHO05D008217 7.8e-179 631.3 616 56.7
A05p34510 Brassica napus HOM05D006614 ORTHO05D008217 1.3e-178 630.6 628 54.6
BraA05t22271Z Brassica rapa HOM05D006614 ORTHO05D008217 1.3e-178 630.6 628 54.6
BolC5t33914H Brassica oleracea HOM05D006614 ORTHO05D008217 2.3e-178 629.8 629 56.9
Carub.0003s1456 Capsella rubella HOM05D006614 ORTHO05D008217 3.9e-178 629.0 563 60.7
C05p52250 Brassica napus HOM05D006614 ORTHO05D008217 5.0e-178 628.6 630 54.9
CAN.G375.15 Capsicum annuum HOM05D006614 ORTHO05D008217 1.1e-177 627.5 568 57.4
Aa31LG8G2110 Aethionema arabicum HOM05D006614 ORTHO05D008217 1.5e-177 627.1 636 56.3
PSO063G1163 Papaver somniferum HOM05D006614 ORTHO05D008217 1.5e-177 627.1 613 54.0
BcaB06g25331 Brassica carinata HOM05D006614 ORTHO05D008217 1.9e-177 626.7 625 57.8
AL3G27220 Arabidopsis lyrata HOM05D006614 ORTHO05D008217 2.5e-177 626.3 557 60.7
PSO421G0295 Papaver somniferum HOM05D006614 ORTHO05D008217 2.5e-177 626.3 633 53.4
EL10Ac8g18445 Beta vulgaris HOM05D006614 ORTHO05D008217 6.2e-176 621.7 561 62.2
Thhalv10022322m.g Eutrema salsugineum HOM05D006614 ORTHO05D008217 3.1e-175 619.4 623 56.5
SalBow5G0223 Salvia bowleyana HOM05D006614 ORTHO05D008217 5.2e-175 618.6 587 55.4
Oeu061358.1 Olea europaea HOM05D006614 ORTHO05D008217 8.9e-175 617.8 609 56.8
BcaB06g29517 Brassica carinata HOM05D006614 ORTHO05D008217 4.1e-172 609.0 550 57.6
Atru.chr2.2145 Acer truncatum HOM05D006614 ORTHO05D008217 2.1e-171 606.7 565 55.9
CDE12G0873 Ceratophyllum demersum HOM05D006614 ORTHO05D008217 3.5e-171 605.9 542 61.4
SGA_v2.0_scaffold34G13782 Striga asiatica HOM05D006614 ORTHO05D008217 1.3e-170 604.0 621 54.4
unitig_747.g21586 Utricularia gibba HOM05D006614 ORTHO05D008217 5.1e-170 602.1 547 55.8
CARHR089840 Cardamine hirsuta HOM05D006614 ORTHO05D008217 6.2e-168 595.1 565 58.1
Aqoxy1G00012 Aquilegia oxysepala HOM05D006614 ORTHO05D008217 2.9e-165 586.3 555 59.8
AUR62021467 Chenopodium quinoa HOM05D006614 ORTHO05D008217 6.4e-165 585.1 548 55.5
MBI12_g10753_MAGBIO Magnolia biondii HOM05D006614 ORTHO05D008217 9.2e-164 581.3 484 60.1
Hma1.2p1_0290F.1_g114840 Hydrangea macrophylla HOM05D006614 ORTHO05D008217 1.4e-159 567.4 443 65.5
AUR62010952 Chenopodium quinoa HOM05D006614 ORTHO05D008217 4.6e-155 552.4 576 51.7
HPP92_015867 Vanilla planifolia HOM05D006614 ORTHO05D008217 3.0e-154 549.7 652 48.3
vmacro11940 Vaccinium macrocarpon HOM05D006614 ORTHO05D008217 7.3e-153 545.0 599 49.6
FAN25G0567 Fragaria x ananassa HOM05D006614 ORTHO05D008217 1.4e-151 540.8 623 50.4
ATR0810G004 Amborella trichopoda HOM05D006614 ORTHO05D008217 4.3e-145 519.2 628 49.8
Eucgr.K01881 Eucalyptus grandis HOM05D006614 ORTHO05D008217 1.5e-137 494.2 573 49.9
Sabra16G0256000 Salix brachista HOM05D006614 ORTHO05D008217 2.4e-135 486.9 365 63.6
Zm00001eb078480 Zea mays HOM05D006614 ORTHO05D008217 4.3e-129 466.1 552 48.0
Os04g0497900 Oryza sativa ssp. japonica HOM05D006614 ORTHO05D008217 6.2e-128 462.2 547 49.5
Glyma.02G250300 Glycine max HOM05D006614 ORTHO05D008217 3.8e-125 453.0 342 73.7
Aqoxy3G00116 Aquilegia oxysepala HOM05D006614 ORTHO05D008217 8.8e-114 415.2 426 57.0
Ciclev10023881m.g Citrus clementina HOM05D006614 ORTHO05D008217 1.7e-101 374.4 354 59.3
SEGI_22211 Sequoiadendron giganteum HOM05D006614 ORTHO05D008217 7.5e-73 279.3 539 34.3
SMO356G0760 Selaginella moellendorffii HOM05D006614 ORTHO05D008217 1.1e-47 195.7 246 40.7
SMO356G0609 Selaginella moellendorffii HOM05D006614 ORTHO05D008217 1.4e-47 195.3 280 39.3
AagrBONN_evm.TU.Sc2ySwM_228.5094 Anthoceros agrestis HOM05D006614 ORTHO05D008217 1.9e-47 194.9 474 34.2
Pp3c16_3160 Physcomitrium patens HOM05D006614 ORTHO05D008217 4.7e-43 180.3 380 33.9
Mapoly0097s0086 Marchantia polymorpha HOM05D006614 ORTHO05D008217 5.4e-39 166.8 312 32.1
Cfa009322 Carpinus fangiana HOM05D006614 ORTHO05D008217 3.2e-31 141.0 139 54.0
MD11G1263800 Malus domestica HOM05D006614 ORTHO05D008217 4.6e-30 137.1 90 66.7
Psat0s3066g0040 Pisum sativum HOM05D006614 ORTHO05D008217 2.3e-29 134.8 77 80.5
Dinv02793 Davidia involucrata HOM05D006614 ORTHO05D008217 3.0e-29 134.4 84 75.0
FAN21G3229 Fragaria x ananassa HOM05D006614 ORTHO05D008217 1.0e-21 109.4 80 61.2
Cfa001947 Carpinus fangiana HOM05D006614 ORTHO05D008217 1.3e-21 109.0 83 65.1
HPP92_015860 Vanilla planifolia HOM05D006614 ORTHO05D008217 3.1e-18 97.8 58 70.7
CBR_g47994 Chara braunii HOM05D006614 ORTHO05D008217 5.8e-17 93.6 161 32.3
Aqoxy3G00115 Aquilegia oxysepala HOM05D006614 ORTHO05D008217 9.3e-15 86.3 99 54.5


User provided reference genes

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