Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.084TER Arachis hypogaea HOM05D000729 ORTHO05D001063 2.8e-32 141.4 72 100.0
arahy.Tifrunner.gnm1.ann1.8IFR8Y Arachis hypogaea HOM05D000729 ORTHO05D001063 7.6e-30 133.3 68 98.5
arahy.Tifrunner.gnm1.ann1.FU0XIN Arachis hypogaea HOM05D000729 ORTHO05D001063 7.6e-30 133.3 68 98.5
arahy.Tifrunner.gnm1.ann1.HJG1UD Arachis hypogaea HOM05D000729 ORTHO05D001063 3.8e-29 131.0 68 97.1
FAN24G1010 Fragaria x ananassa HOM05D000729 ORTHO05D001063 3.2e-28 127.9 68 95.6
arahy.Tifrunner.gnm1.ann1.0BYT70 Arachis hypogaea HOM05D000729 ORTHO05D001063 5.7e-25 117.1 78 80.8
arahy.Tifrunner.gnm1.ann1.R4S00L Arachis hypogaea HOM05D000729 ORTHO05D001063 5.7e-25 117.1 68 91.2
Sed0008128 Sechium edule HOM05D000729 ORTHO05D001063 7.4e-25 116.7 63 93.7
arahy.Tifrunner.gnm1.ann1.A85ADF Arachis hypogaea HOM05D000729 ORTHO05D001063 1.6e-24 115.5 64 89.1
arahy.Tifrunner.gnm1.ann1.NGJ0AN Arachis hypogaea HOM05D000729 ORTHO05D001063 1.6e-24 115.5 64 89.1
arahy.Tifrunner.gnm1.ann1.S6TNUT Arachis hypogaea HOM05D000729 ORTHO05D001063 1.6e-24 115.5 64 89.1
CSS0022079 Camellia sinensis var. sinensis HOM05D000729 ORTHO05D001063 2.1e-24 115.2 66 87.9
CSS0038723 Camellia sinensis var. sinensis HOM05D000729 ORTHO05D001063 2.1e-24 115.2 66 87.9
SabraPtG0004800 Salix brachista HOM05D000729 ORTHO05D001063 8.2e-24 113.2 63 88.9
HanXRQChr00c0349g0574001 Helianthus annuus HOM05D000729 ORTHO05D001063 1.1e-23 112.8 63 90.5
HanXRQChr00c0585g0576201 Helianthus annuus HOM05D000729 ORTHO05D001063 1.1e-23 112.8 63 90.5
HanXRQChr07g0194901 Helianthus annuus HOM05D000729 ORTHO05D001063 1.1e-23 112.8 63 90.5
Nitab4.5_0012558g0030 Nicotiana tabacum HOM05D000729 ORTHO05D001063 1.4e-23 112.5 63 87.3
arahy.Tifrunner.gnm1.ann1.NIYG2M Arachis hypogaea HOM05D000729 ORTHO05D001063 2.4e-23 111.7 64 87.5
Nitab4.5_0007738g0070 Nicotiana tabacum HOM05D000729 ORTHO05D001063 3.1e-23 111.3 59 94.9
EL10As15g24113 Beta vulgaris HOM05D000729 ORTHO05D001063 4.0e-23 110.9 58 96.6
Nitab4.5_0027450g0010 Nicotiana tabacum HOM05D000729 ORTHO05D001063 4.0e-23 110.9 59 93.2
VMungo0643G0001 Vigna mungo HOM05D000729 ORTHO05D001063 4.0e-23 110.9 58 96.6
Medtr0002s0310 Medicago truncatula HOM05D000729 ORTHO05D001063 5.3e-23 110.5 62 90.3
Nitab4.5_0014666g0030 Nicotiana tabacum HOM05D000729 ORTHO05D001063 9.0e-23 109.8 63 85.7
HanXRQChr00c0264g0572891 Helianthus annuus HOM05D000729 ORTHO05D001063 1.2e-22 109.4 59 93.2
HanXRQChr00c0386g0574421 Helianthus annuus HOM05D000729 ORTHO05D001063 1.2e-22 109.4 59 93.2
HanXRQChr00c0434g0574661 Helianthus annuus HOM05D000729 ORTHO05D001063 1.2e-22 109.4 59 93.2
HanXRQChr00c0533g0575531 Helianthus annuus HOM05D000729 ORTHO05D001063 1.2e-22 109.4 59 93.2
HanXRQChr01g0020151 Helianthus annuus HOM05D000729 ORTHO05D001063 1.2e-22 109.4 59 93.2
HanXRQChr02g0059631 Helianthus annuus HOM05D000729 ORTHO05D001063 1.2e-22 109.4 59 93.2
HanXRQChr05g0152351 Helianthus annuus HOM05D000729 ORTHO05D001063 1.2e-22 109.4 59 93.2
HanXRQChr05g0152491 Helianthus annuus HOM05D000729 ORTHO05D001063 1.2e-22 109.4 59 93.2
HanXRQChr10g0284481 Helianthus annuus HOM05D000729 ORTHO05D001063 1.2e-22 109.4 59 93.2
HanXRQChr11g0321181 Helianthus annuus HOM05D000729 ORTHO05D001063 1.2e-22 109.4 59 93.2
HanXRQChr11g0327111 Helianthus annuus HOM05D000729 ORTHO05D001063 1.2e-22 109.4 59 93.2
HanXRQChr11g0333791 Helianthus annuus HOM05D000729 ORTHO05D001063 1.2e-22 109.4 59 93.2
HanXRQChr12g0369921 Helianthus annuus HOM05D000729 ORTHO05D001063 1.2e-22 109.4 59 93.2
HanXRQChr13g0418941 Helianthus annuus HOM05D000729 ORTHO05D001063 1.2e-22 109.4 59 93.2
HanXRQChr17g0569661 Helianthus annuus HOM05D000729 ORTHO05D001063 1.2e-22 109.4 59 93.2
HanXRQCPg0580271 Helianthus annuus HOM05D000729 ORTHO05D001063 1.2e-22 109.4 59 93.2
HanXRQCPg0580451 Helianthus annuus HOM05D000729 ORTHO05D001063 1.2e-22 109.4 59 93.2
EL10Ac4g08618 Beta vulgaris HOM05D000729 ORTHO05D001063 1.5e-22 109.0 60 90.0
C06p21330 Brassica napus HOM05D000729 ORTHO05D001063 1.5e-22 109.0 59 93.2
C06p23140 Brassica napus HOM05D000729 ORTHO05D001063 1.5e-22 109.0 59 93.2
C09p24730 Brassica napus HOM05D000729 ORTHO05D001063 1.5e-22 109.0 59 93.2
BolSC35t60680H Brassica oleracea HOM05D000729 ORTHO05D001063 1.5e-22 109.0 59 93.2
BolSC45t60895H Brassica oleracea HOM05D000729 ORTHO05D001063 1.5e-22 109.0 59 93.2
BolSC49t61130H Brassica oleracea HOM05D000729 ORTHO05D001063 1.5e-22 109.0 59 93.2
BolSC49t61215H Brassica oleracea HOM05D000729 ORTHO05D001063 1.5e-22 109.0 59 93.2
BraSC138t45543Z Brassica rapa HOM05D000729 ORTHO05D001063 1.5e-22 109.0 59 93.2
vmacro22398 Vaccinium macrocarpon HOM05D000729 ORTHO05D001063 2.0e-22 108.6 60 91.7
vmacro22423 Vaccinium macrocarpon HOM05D000729 ORTHO05D001063 2.0e-22 108.6 60 91.7
Lsat_1_v5_gn_3_112740 Lactuca sativa HOM05D000729 ORTHO05D001063 3.4e-22 107.8 59 91.5
Lsat_1_v5_gn_3_92301 Lactuca sativa HOM05D000729 ORTHO05D001063 3.4e-22 107.8 59 91.5
Lsat_1_v5_gn_4_11820 Lactuca sativa HOM05D000729 ORTHO05D001063 3.4e-22 107.8 59 91.5
Lsat_1_v5_gn_9_18660 Lactuca sativa HOM05D000729 ORTHO05D001063 3.4e-22 107.8 59 91.5
Medtr3g035660 Medicago truncatula HOM05D000729 ORTHO05D001063 4.5e-22 107.5 59 93.2
Lsat_1_v5_gn_6_37880 Lactuca sativa HOM05D000729 ORTHO05D001063 1.0e-21 106.3 67 83.6
EL10Ac5g11886 Beta vulgaris HOM05D000729 ORTHO05D001063 1.7e-21 105.5 55 96.4
HanXRQChr17g0567651 Helianthus annuus HOM05D000729 ORTHO05D001063 1.7e-21 105.5 59 91.5
Sed0001647 Sechium edule HOM05D000729 ORTHO05D001063 1.7e-21 105.5 55 96.4
LjContig00319g0001918 Lotus japonicus HOM05D000729 ORTHO05D001063 3.8e-21 104.4 57 91.2
Lalb_Chr12g0206651 Lupinus albus HOM05D000729 ORTHO05D001063 3.8e-21 104.4 59 89.8
Nitab4.5_0007104g0090 Nicotiana tabacum HOM05D000729 ORTHO05D001063 1.4e-20 102.4 59 88.1
arahy.Tifrunner.gnm1.ann1.KE24QQ Arachis hypogaea HOM05D000729 ORTHO05D001063 5.5e-20 100.5 54 92.6
Nitab4.5_0001305g0050 Nicotiana tabacum HOM05D000890 ORTHO05D000697 1.2e-19 99.4 57 87.7
HanXRQChr00c0572g0576001 Helianthus annuus HOM05D000729 ORTHO05D001063 2.1e-19 98.6 53 94.3
HanXRQChr00c0747g0577151 Helianthus annuus HOM05D000729 ORTHO05D001063 2.1e-19 98.6 53 94.3
HanXRQChr00c0634g0576581 Helianthus annuus HOM05D000729 ORTHO05D001063 3.5e-19 97.8 64 81.2
HanXRQChr00c0554g0575661 Helianthus annuus HOM05D000729 ORTHO05D001063 6.1e-19 97.1 52 94.2
Oeu015132.1 Olea europaea HOM05D000729 ORTHO05D001063 7.9e-19 96.7 58 82.8
Hma1.2p1_0052F.1_g030753 Hydrangea macrophylla HOM05D000729 ORTHO05D001063 1.5e-17 92.4 49 95.9
Hma1.2p1_0052F.1_g030756 Hydrangea macrophylla HOM05D000729 ORTHO05D001063 1.5e-17 92.4 49 95.9
Hma1.2p1_1244F.1_g270050 Hydrangea macrophylla HOM05D000729 ORTHO05D001063 1.5e-17 92.4 49 95.9
Hma1.2p1_1244F.1_g270060 Hydrangea macrophylla HOM05D000729 ORTHO05D001063 1.5e-17 92.4 49 95.9
Lj2P1239T117 Lonicera japonica HOM05D000729 ORTHO05D001063 1.9e-17 92.0 50 94.0
Nn031s41602 Nelumbo nucifera HOM05D000729 ORTHO05D001063 2.5e-17 91.7 68 76.5
AL1G51260 Arabidopsis lyrata HOM05D000729 ORTHO05D001063 7.4e-17 90.1 48 95.8
AL7G44080 Arabidopsis lyrata HOM05D000729 ORTHO05D001063 7.4e-17 90.1 48 95.8
ATCG00890 Arabidopsis thaliana HOM05D000729 ORTHO05D001063 7.4e-17 90.1 48 95.8
ATCG01250 Arabidopsis thaliana HOM05D000729 ORTHO05D001063 7.4e-17 90.1 48 95.8
Gohir.A05G323796 Gossypium hirsutum HOM05D000729 ORTHO05D001063 7.4e-17 90.1 48 95.8
HanXRQChr00c0496g0575221 Helianthus annuus HOM05D000729 ORTHO05D001063 7.4e-17 90.1 58 81.0
PGR111G0104 Punica granatum HOM05D000729 ORTHO05D001063 7.4e-17 90.1 48 95.8
PGR111G0125 Punica granatum HOM05D000729 ORTHO05D001063 7.4e-17 90.1 48 95.8
SalBow1G3941 Salvia bowleyana HOM05D000729 ORTHO05D001063 7.4e-17 90.1 48 95.8
SalBow1G4562 Salvia bowleyana HOM05D000729 ORTHO05D001063 7.4e-17 90.1 48 95.8
SalBow1G6647 Salvia bowleyana HOM05D000729 ORTHO05D001063 7.4e-17 90.1 48 95.8
Nitab4.5_0001392g0020 Nicotiana tabacum HOM05D000729 ORTHO05D001063 9.7e-17 89.7 58 77.6
DCAR_032530 Daucus carota HOM05D000729 ORTHO05D001063 2.8e-16 88.2 48 93.8
DCAR_032546 Daucus carota HOM05D000729 ORTHO05D001063 2.8e-16 88.2 48 93.8
PSO357G0279 Papaver somniferum HOM05D000729 ORTHO05D001063 2.8e-16 88.2 48 93.8
PSO548G0058 Papaver somniferum HOM05D000729 ORTHO05D001063 2.8e-16 88.2 48 93.8
PSO548G0065 Papaver somniferum HOM05D000729 ORTHO05D001063 2.8e-16 88.2 48 93.8
Gohir.A09G046338 Gossypium hirsutum HOM05D000729 ORTHO05D001063 3.1e-15 84.7 68 70.6
Solyc11g021100.2 Solanum lycopersicum HOM05D000729 ORTHO05D001063 3.1e-15 84.7 45 93.3
Sabra06G0064300 Salix brachista HOM05D000729 ORTHO05D001063 4.1e-15 84.3 50 88.0
VMungo0942G0002 Vigna mungo HOM05D000729 ORTHO05D001063 5.3e-15 84.0 48 91.7
HanXRQChr00c0454g0574901 Helianthus annuus HOM05D000729 ORTHO05D001063 1.5e-14 82.4 45 91.1
Migut.D01322 Erythranthe guttata HOM05D000729 ORTHO05D001063 2.0e-14 82.0 44 95.5
Nitab4.5_0000729g0100 Nicotiana tabacum HOM05D000729 ORTHO05D001063 2.0e-14 82.0 48 85.4
AL9U12020 Arabidopsis lyrata HOM05D000729 ORTHO05D001063 2.6e-14 81.6 44 93.2
CARHR282330 Cardamine hirsuta HOM05D000729 ORTHO05D001063 2.6e-14 81.6 44 93.2
CARHR282530 Cardamine hirsuta HOM05D000729 ORTHO05D001063 2.6e-14 81.6 44 93.2
CsaV3_UNG208980 Cucumis sativus L. HOM05D000729 ORTHO05D001063 2.6e-14 81.6 44 93.2
Gohir.D02G117466 Gossypium hirsutum HOM05D000729 ORTHO05D001063 2.6e-14 81.6 44 93.2
AL2G21870 Arabidopsis lyrata HOM05D000729 ORTHO05D001063 5.9e-14 80.5 43 95.3
HanXRQChr00c0451g0574811 Helianthus annuus HOM05D000729 ORTHO05D001063 5.9e-14 80.5 52 82.7
Potri.011G075051 Populus trichocarpa HOM05D000729 ORTHO05D001063 5.9e-14 80.5 44 90.9
Psat5g286120 Pisum sativum HOM05D000729 ORTHO05D001063 2.2e-13 78.6 46 89.1
SEGI_37255 Sequoiadendron giganteum HOM05D000729 ORTHO05D001063 6.5e-13 77.0 48 83.3
Gohir.D01G101839 Gossypium hirsutum HOM05D000729 ORTHO05D001063 8.5e-13 76.6 44 90.9
BraSC59t46525Z Brassica rapa HOM05D000729 ORTHO05D001063 1.1e-12 76.3 41 92.7
LjContig00489g0003974 Lotus japonicus HOM05D000729 ORTHO05D001063 1.9e-12 75.5 44 88.6
BolSC29t60517H Brassica oleracea HOM05D000729 ORTHO05D001063 2.5e-12 75.1 42 90.5
CSS0050494 Camellia sinensis var. sinensis HOM05D000729 ORTHO05D001063 4.2e-12 74.3 47 87.2
Nitab4.5_0012260g0090 Nicotiana tabacum HOM05D000729 ORTHO05D001063 4.2e-12 74.3 40 92.5
Nitab4.5_0000153g0170 Nicotiana tabacum HOM05D000729 ORTHO05D001063 5.5e-12 73.9 41 90.2
Sed0019191 Sechium edule HOM05D000729 ORTHO05D001063 1.6e-11 72.4 63 69.8
Nn064s42226 Nelumbo nucifera HOM05D000729 ORTHO05D001063 6.1e-11 70.5 37 94.6
Peaxi162Scf00014g00287 Petunia axillaris HOM05D000729 ORTHO05D001063 3.0e-10 68.2 39 89.7
Nitab4.5_0006542g0040 Nicotiana tabacum HOM05D000729 ORTHO05D001063 2.0e-09 65.5 33 97.0
Solyc10g061887.1 Solanum lycopersicum HOM05D000729 ORTHO05D001063 3.3e-09 64.7 53 69.8
Peaxi162Scf00299g00113 Petunia axillaris HOM05D000729 ORTHO05D001063 8.2e-08 60.1 33 90.9
BolC7t41702H Brassica oleracea HOM05D000729 ORTHO05D001063 1.4e-07 59.3 41 75.6
BolSC49t61156H Brassica oleracea HOM05D000729 ORTHO05D001063 1.4e-07 59.3 41 78.0
BolSC35t60718H Brassica oleracea HOM05D000729 ORTHO05D001063 3.1e-07 58.2 33 90.9
Lj4g0028091 Lotus japonicus HOM05D000729 ORTHO05D001063 3.1e-07 58.2 28 96.4
Nitab4.5_0004471g0070 Nicotiana tabacum HOM05D000729 ORTHO05D001063 3.1e-07 58.2 42 76.2


User provided reference genes

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