Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.07MWYB Arachis hypogaea HOM05D003943 ORTHO05D004753 1.4e-145 519.6 261 100.0
arahy.Tifrunner.gnm1.ann1.T05T6P Arachis hypogaea HOM05D003943 ORTHO05D004753 1.4e-145 519.6 261 100.0
Glyma.10G081400 Glycine max HOM05D003943 ORTHO05D004753 2.4e-142 508.8 261 96.9
Glyma.10G002300 Glycine max HOM05D003943 ORTHO05D004753 3.2e-142 508.4 261 96.9
VMungo0720G1310 Vigna mungo HOM05D003943 ORTHO05D004753 9.2e-142 506.9 261 96.6
Glyma.02G196900 Glycine max HOM05D003943 ORTHO05D004753 2.0e-141 505.8 261 96.2
Lalb_Chr02g0144091 Lupinus albus HOM05D003943 ORTHO05D004753 2.7e-141 505.4 261 96.6
VMungo0331G0074 Vigna mungo HOM05D003943 ORTHO05D004753 3.5e-141 505.0 261 96.2
Lalb_Chr11g0067891 Lupinus albus HOM05D003943 ORTHO05D004753 6.0e-141 504.2 261 96.6
Phvul.010G103000 Phaseolus vulgaris HOM05D003943 ORTHO05D004753 1.3e-140 503.1 261 95.8
Phvul.007G268100 Phaseolus vulgaris HOM05D003943 ORTHO05D004753 1.7e-140 502.7 261 95.8
Ca_16636_v3 Cicer arietinum L. HOM05D003943 ORTHO05D004753 6.2e-138 494.2 261 93.9
Lj1g0010263 Lotus japonicus HOM05D003943 ORTHO05D004753 1.4e-137 493.0 261 92.7
Potri.006G203400 Populus trichocarpa HOM05D003943 ORTHO05D004753 5.2e-137 491.1 261 93.1
TWI77G0554 Tripterygium wilfordii HOM05D003943 ORTHO05D004753 6.8e-137 490.7 261 92.7
Psat6g114680 Pisum sativum HOM05D003943 ORTHO05D004753 8.9e-137 490.3 261 93.1
Manes.08G033500 Manihot esculenta HOM05D003943 ORTHO05D004753 1.2e-136 490.0 261 92.0
TWI74G1172 Tripterygium wilfordii HOM05D003943 ORTHO05D004753 2.0e-136 489.2 261 92.3
Potri.016G070400 Populus trichocarpa HOM05D003943 ORTHO05D004753 2.6e-136 488.8 261 92.3
Manes.01G025400 Manihot esculenta HOM05D003943 ORTHO05D004753 3.4e-136 488.4 261 91.6
Ciclev10012509m.g Citrus clementina HOM05D003943 ORTHO05D004753 4.4e-136 488.0 261 92.7
Sabra16G0070600 Salix brachista HOM05D003943 ORTHO05D004753 5.8e-136 487.6 261 92.3
Sabra16G0072800 Salix brachista HOM05D003943 ORTHO05D004753 5.8e-136 487.6 261 92.3
Ca_11700_v3 Cicer arietinum L. HOM05D003943 ORTHO05D004753 1.3e-135 486.5 261 92.7
Atru.chr12.911 Acer truncatum HOM05D003943 ORTHO05D004753 2.2e-135 485.7 261 92.3
Atru.chr8.1362 Acer truncatum HOM05D003943 ORTHO05D004753 2.2e-135 485.7 261 92.3
CiPaw.10G017400 Carya illinoinensis HOM05D003943 ORTHO05D004753 8.3e-135 483.8 261 91.2
Aa31sc52G210 Aethionema arabicum HOM05D003943 ORTHO05D004753 1.1e-134 483.4 261 92.0
THA.LOC104826802 Tarenaya hassleriana HOM05D003943 ORTHO05D004753 1.4e-134 483.0 261 91.6
Dinv20358 Davidia involucrata HOM05D003943 ORTHO05D004753 4.1e-134 481.5 261 90.8
Sp6g36490 Schrenkiella parvula HOM05D003943 ORTHO05D004753 4.1e-134 481.5 261 91.6
THA.LOC104809953 Tarenaya hassleriana HOM05D003943 ORTHO05D004753 4.1e-134 481.5 261 91.2
Thecc.05G104300 Theobroma cacao HOM05D003943 ORTHO05D004753 5.4e-134 481.1 261 90.8
Oeu049654.1 Olea europaea HOM05D003943 ORTHO05D004753 9.2e-134 480.3 261 90.0
Sed0023950 Sechium edule HOM05D003943 ORTHO05D004753 9.2e-134 480.3 261 91.6
AT5G06360 Arabidopsis thaliana HOM05D003943 ORTHO05D004753 1.2e-133 479.9 261 91.2
PGR004G2105 Punica granatum HOM05D003943 ORTHO05D004753 2.1e-133 479.2 261 91.2
PGR142G4032 Punica granatum HOM05D003943 ORTHO05D004753 2.1e-133 479.2 261 91.2
ClCG01G015010 Citrullus lanatus HOM05D003943 ORTHO05D004753 3.5e-133 478.4 261 90.8
Lsat_1_v5_gn_4_88760 Lactuca sativa HOM05D003943 ORTHO05D004753 3.5e-133 478.4 261 90.4
Nn2g14305 Nelumbo nucifera HOM05D003943 ORTHO05D004753 3.5e-133 478.4 261 91.2
Gohir.A09G134200 Gossypium hirsutum HOM05D003943 ORTHO05D004753 4.6e-133 478.0 261 90.0
Gorai.006G149400 Gossypium raimondii HOM05D003943 ORTHO05D004753 4.6e-133 478.0 261 90.0
Medtr3g088865 Medicago truncatula HOM05D003943 ORTHO05D004753 4.6e-133 478.0 261 91.2
Prupe.4G241300 Prunus persica HOM05D003943 ORTHO05D004753 4.6e-133 478.0 261 90.0
QL07p036748 Quercus lobata HOM05D003943 ORTHO05D004753 4.6e-133 478.0 260 90.4
Carub.0006s0525 Capsella rubella HOM05D003943 ORTHO05D004753 6.0e-133 477.6 261 91.2
CsaV3_6G041100 Cucumis sativus L. HOM05D003943 ORTHO05D004753 6.0e-133 477.6 261 90.4
Sed0024685 Sechium edule HOM05D003943 ORTHO05D004753 6.0e-133 477.6 261 91.2
Duzib093G1950 Durio zibethinus HOM05D003943 ORTHO05D004753 7.8e-133 477.2 261 90.0
Oeu039454.1 Olea europaea HOM05D003943 ORTHO05D004753 1.3e-132 476.5 260 90.0
TAR623G0676 Trochodendron aralioides HOM05D003943 ORTHO05D004753 1.3e-132 476.5 261 89.3
MSTRG.10894 Avicennia marina HOM05D003943 ORTHO05D004753 1.7e-132 476.1 261 89.3
COL.COLO4_29575 Corchorus olitorius HOM05D003943 ORTHO05D004753 1.7e-132 476.1 261 90.8
MELO3C024586.2 Cucumis melo HOM05D003943 ORTHO05D004753 1.7e-132 476.1 261 90.0
Gorai.002G235200 Gossypium raimondii HOM05D003943 ORTHO05D004753 1.7e-132 476.1 261 89.7
Lsat_1_v5_gn_6_32361 Lactuca sativa HOM05D003943 ORTHO05D004753 1.7e-132 476.1 260 90.4
TPR.G5876 Trifolium pratense HOM05D003943 ORTHO05D004753 1.7e-132 476.1 261 91.6
Actinidia21868 Actinidia chinensis HOM05D003943 ORTHO05D004753 3.0e-132 475.3 261 90.0
CANSAT64G2459 Cannabis sativa HOM05D003943 ORTHO05D004753 3.0e-132 475.3 261 89.7
Gohir.D01G191300 Gossypium hirsutum HOM05D003943 ORTHO05D004753 5.1e-132 474.6 261 89.3
Sopen09g036280 Solanum pennellii HOM05D003943 ORTHO05D004753 5.1e-132 474.6 261 90.0
Actinidia38793 Actinidia chinensis HOM05D003943 ORTHO05D004753 6.6e-132 474.2 261 90.0
Eucgr.K02620 Eucalyptus grandis HOM05D003943 ORTHO05D004753 6.6e-132 474.2 261 89.7
Lj6A21G25 Lonicera japonica HOM05D003943 ORTHO05D004753 8.6e-132 473.8 261 89.7
ATR0772G207 Amborella trichopoda HOM05D003943 ORTHO05D004753 1.1e-131 473.4 261 87.7
CSS0000599 Camellia sinensis var. sinensis HOM05D003943 ORTHO05D004753 1.1e-131 473.4 258 90.7
Thhalv10014439m.g Eutrema salsugineum HOM05D003943 ORTHO05D004753 1.1e-131 473.4 261 89.7
Rhsim08G0248000 Rhododendron simsii HOM05D003943 ORTHO05D004753 1.1e-131 473.4 261 88.5
CDE10G1025 Ceratophyllum demersum HOM05D003943 ORTHO05D004753 1.5e-131 473.0 261 89.3
PGSC0003DMG400021625 Solanum tuberosum HOM05D003943 ORTHO05D004753 1.5e-131 473.0 261 89.7
Gohir.A01G201400 Gossypium hirsutum HOM05D003943 ORTHO05D004753 1.9e-131 472.6 261 89.3
AL6G16440 Arabidopsis lyrata HOM05D003943 ORTHO05D004753 2.5e-131 472.2 261 90.4
unitig_32.g11085 Utricularia gibba HOM05D003943 ORTHO05D004753 2.5e-131 472.2 260 89.2
Cpa.g.sc104.32 Carica papaya HOM05D003943 ORTHO05D004753 3.3e-131 471.9 261 88.9
Haze_03432 Corylus avellana HOM05D003943 ORTHO05D004753 3.3e-131 471.9 261 89.7
Haze_20185 Corylus avellana HOM05D003943 ORTHO05D004753 3.3e-131 471.9 261 89.7
TAR633G0404 Trochodendron aralioides HOM05D003943 ORTHO05D004753 3.3e-131 471.9 261 88.9
Lj6A3G40 Lonicera japonica HOM05D003943 ORTHO05D004753 4.3e-131 471.5 260 89.6
SalBow6G5742 Salvia bowleyana HOM05D003943 ORTHO05D004753 4.3e-131 471.5 261 88.5
GSVIVG01011153001 Vitis vinifera HOM05D003943 ORTHO05D004753 5.6e-131 471.1 260 90.0
BcaB05g21673 Brassica carinata HOM05D003943 ORTHO05D004753 7.3e-131 470.7 261 89.7
RcHm_v2.0_Chr2g0122251 Rosa chinensis HOM05D003943 ORTHO05D004753 7.3e-131 470.7 261 88.1
RcHm_v2.0_Chr4g0409741 Rosa chinensis HOM05D003943 ORTHO05D004753 7.3e-131 470.7 261 88.1
Sabra06G0156600 Salix brachista HOM05D003943 ORTHO05D004753 9.5e-131 470.3 285 83.9
C02p02670 Brassica napus HOM05D003943 ORTHO05D004753 1.6e-130 469.5 261 89.7
C09p70420 Brassica napus HOM05D003943 ORTHO05D004753 1.6e-130 469.5 260 90.0
BolC2t06233H Brassica oleracea HOM05D003943 ORTHO05D004753 1.6e-130 469.5 261 89.7
BolC9t59788H Brassica oleracea HOM05D003943 ORTHO05D004753 1.6e-130 469.5 260 90.0
vmacro18760 Vaccinium macrocarpon HOM05D003943 ORTHO05D004753 1.6e-130 469.5 265 87.5
FvH4_1g24730 Fragaria vesca HOM05D003943 ORTHO05D004753 2.1e-130 469.2 261 87.7
FvH4_1g24810 Fragaria vesca HOM05D003943 ORTHO05D004753 2.1e-130 469.2 261 87.7
FAN19G3070 Fragaria x ananassa HOM05D003943 ORTHO05D004753 2.1e-130 469.2 261 87.7
Medtr0508s0010 Medicago truncatula HOM05D003943 ORTHO05D004753 2.1e-130 469.2 261 90.0
BcaC03g13169 Brassica carinata HOM05D003943 ORTHO05D004753 2.8e-130 468.8 261 89.3
Cc04_g00390 Coffea canephora HOM05D003943 ORTHO05D004753 3.6e-130 468.4 269 87.4
HanXRQChr09g0277391 Helianthus annuus HOM05D003943 ORTHO05D004753 6.2e-130 467.6 261 88.9
CARHR207110 Cardamine hirsuta HOM05D003943 ORTHO05D004753 1.1e-129 466.8 261 87.0
Migut.I01176 Erythranthe guttata HOM05D003943 ORTHO05D004753 1.1e-129 466.8 261 87.7
HanXRQChr17g0533251 Helianthus annuus HOM05D003943 ORTHO05D004753 1.4e-129 466.5 261 88.5
Lj2g0010046 Lotus japonicus HOM05D003943 ORTHO05D004753 1.4e-129 466.5 261 89.7
MD05G1235300 Malus domestica HOM05D003943 ORTHO05D004753 1.4e-129 466.5 261 87.4
A10p30010 Brassica napus HOM05D003943 ORTHO05D004753 1.8e-129 466.1 259 90.0
BraA10t45041Z Brassica rapa HOM05D003943 ORTHO05D004753 1.8e-129 466.1 259 90.0
Cfa010504 Carpinus fangiana HOM05D003943 ORTHO05D004753 1.8e-129 466.1 261 88.1
Hund10875 Selenicereus undatus HOM05D003943 ORTHO05D004753 2.3e-129 465.7 261 87.7
MD10G1211300 Malus domestica HOM05D003943 ORTHO05D004753 3.1e-129 465.3 261 87.4
HPP92_002146 Vanilla planifolia HOM05D003943 ORTHO05D004753 3.1e-129 465.3 256 89.1
ECA233G4676 Erigeron canadensis HOM05D003943 ORTHO05D004753 4.0e-129 464.9 261 88.5
BraA02t04878Z Brassica rapa HOM05D003943 ORTHO05D004753 6.8e-129 464.2 260 88.8
PSO384G4082 Papaver somniferum HOM05D003943 ORTHO05D004753 6.8e-129 464.2 261 87.4
Peaxi162Scf00286g00330 Petunia axillaris HOM05D003943 ORTHO05D004753 8.9e-129 463.8 264 88.3
PSO339G3654 Papaver somniferum HOM05D003943 ORTHO05D004753 1.2e-128 463.4 261 87.0
Hma1.2p1_1104F.1_g257380 Hydrangea macrophylla HOM05D003943 ORTHO05D004753 3.7e-127 458.4 259 87.6
Mapoly0020s0123 Marchantia polymorpha HOM05D003943 ORTHO05D004753 3.7e-127 458.4 261 86.2
AagrBONN_evm.TU.Sc2ySwM_369.90 Anthoceros agrestis HOM05D003943 ORTHO05D004753 1.1e-126 456.8 261 84.7
SGA_v2.0_scaffold71G24009 Striga asiatica HOM05D003943 ORTHO05D004753 3.2e-126 455.3 261 85.8
Nitab4.5_0008073g0030 Nicotiana tabacum HOM05D003943 ORTHO05D004753 4.1e-126 454.9 261 87.0
Pp3c7_2280 Physcomitrium patens HOM05D003943 ORTHO05D004753 4.1e-126 454.9 261 85.1
TPR.G2813 Trifolium pratense HOM05D003943 ORTHO05D004753 5.4e-126 454.5 276 84.4
EL10Ac5g12966 Beta vulgaris HOM05D003943 ORTHO05D004753 1.2e-125 453.4 260 86.5
Aqoxy1G00659 Aquilegia oxysepala HOM05D003943 ORTHO05D004753 1.6e-125 453.0 261 86.6
SMO367G0573 Selaginella moellendorffii HOM05D003943 ORTHO05D004753 4.6e-125 451.4 261 85.1
Ah.12g059190 Amaranthus hybridus HOM05D003943 ORTHO05D004753 1.3e-124 449.9 261 84.3
AUR62036383 Chenopodium quinoa HOM05D003943 ORTHO05D004753 1.7e-124 449.5 261 84.7
FAN23G0735 Fragaria x ananassa HOM05D003943 ORTHO05D004753 1.7e-124 449.5 277 81.6
CiPaw.09G020900 Carya illinoinensis HOM05D003943 ORTHO05D004753 9.6e-123 443.7 240 91.2
CBR_g12036 Chara braunii HOM05D003943 ORTHO05D004753 1.2e-122 443.4 261 82.0
AUR62030745 Chenopodium quinoa HOM05D003943 ORTHO05D004753 2.1e-122 442.6 256 84.4
Os07g0673100 Oryza sativa ssp. japonica HOM05D003943 ORTHO05D004753 2.2e-119 432.6 261 83.1
FAN19G1372 Fragaria x ananassa HOM05D003943 ORTHO05D004753 7.1e-118 427.6 241 86.7
FAN28G2380 Fragaria x ananassa HOM05D003943 ORTHO05D004753 2.1e-117 426.0 241 86.3
Zm00001eb111290 Zea mays HOM05D003943 ORTHO05D004753 6.2e-114 414.5 261 80.5
Zm00001eb330440 Zea mays HOM05D003943 ORTHO05D004753 6.2e-114 414.5 261 80.5
Gohir.D09G130700 Gossypium hirsutum HOM05D003943 ORTHO05D004753 1.4e-113 413.3 261 81.2
MCO03G138 Micromonas commoda HOM05D003943 ORTHO05D004753 1.8e-113 412.9 261 74.7
PRCOL_00000915 Prasinoderma coloniale HOM05D003943 ORTHO05D004753 1.2e-112 410.2 261 78.5
Cre12.g507300 Chlamydomonas reinhardtii HOM05D003943 ORTHO05D004753 2.6e-112 409.1 261 77.0
AagrBONN_evm.TU.Sc2ySwM_340.394 Anthoceros agrestis HOM05D003943 ORTHO05D004753 2.2e-111 406.0 266 77.4
Dinv37798 Davidia involucrata HOM05D003943 ORTHO05D004753 9.3e-110 400.6 213 91.5
PGSC0003DMG400029099 Solanum tuberosum HOM05D003943 ORTHO05D004753 4.6e-109 398.3 261 78.5
Sc14g0006610 Simmondsia chinensis HOM05D003943 ORTHO05D004753 3.3e-107 392.1 222 87.4
Rhsim05G0206200 Rhododendron simsii HOM05D003943 ORTHO05D004753 4.8e-106 388.3 261 76.6
DCAR_016668 Daucus carota HOM05D003943 ORTHO05D004753 1.1e-105 387.1 254 77.2
FAN26G0481 Fragaria x ananassa HOM05D003943 ORTHO05D004753 2.4e-105 386.0 337 62.0
unitig_748.g7832 Utricularia gibba HOM05D003943 ORTHO05D004753 5.3e-105 384.8 201 92.0
CAN.G710.48 Capsicum annuum HOM05D003943 ORTHO05D004753 6.9e-105 384.4 309 68.6
DCAR_017903 Daucus carota HOM05D003943 ORTHO05D004753 5.8e-104 381.3 240 79.2
SEGI_04875 Sequoiadendron giganteum HOM05D003943 ORTHO05D004753 3.2e-102 375.6 195 92.8
Aa31LG3G5080 Aethionema arabicum HOM05D003943 ORTHO05D004753 2.7e-101 372.5 200 91.5
Nitab4.5_0003291g0080 Nicotiana tabacum HOM05D003943 ORTHO05D004753 7.4e-91 337.8 256 71.1
Haze_27191 Corylus avellana HOM05D003943 ORTHO05D004753 6.9e-89 331.3 260 63.1
FAN23G1436 Fragaria x ananassa HOM05D003943 ORTHO05D004753 3.8e-87 325.5 177 87.6
Peaxi162Scf01149g00220 Petunia axillaris HOM05D003943 ORTHO05D004753 1.1e-83 313.9 161 93.2
Cfa024104 Carpinus fangiana HOM05D003943 ORTHO05D123184 7.7e-72 274.6 229 60.3
TPR.G6300 Trifolium pratense HOM05D003943 ORTHO05D004753 1.9e-70 270.0 240 62.9
BcaC06g32370 Brassica carinata HOM05D003943 ORTHO05D004753 7.5e-59 231.5 142 84.5
BcaNung06320 Brassica carinata HOM05D003943 ORTHO05D004753 2.2e-58 229.9 143 83.2
CDE10G0220 Ceratophyllum demersum HOM05D003943 ORTHO05D004753 1.1e-57 227.6 113 95.6
CDE10G0110 Ceratophyllum demersum HOM05D003943 ORTHO05D004753 2.0e-56 223.4 135 84.4
SHI12410 Sapria himalayana HOM05D003943 ORTHO05D004753 3.1e-49 199.5 98 93.9
RcHm_v2.0_Chr7g0216551 Rosa chinensis HOM05D003943 ORTHO05D004753 6.8e-44 181.8 270 46.3
Duzib106G1686 Durio zibethinus HOM05D003943 ORTHO05D004753 2.2e-42 176.8 196 53.1
Lsat_1_v5_gn_8_162181 Lactuca sativa HOM05D003943 ORTHO05D004753 2.2e-42 176.8 109 80.7
RcHm_v2.0_Chr7g0216591 Rosa chinensis HOM05D003943 ORTHO05D004753 4.5e-40 169.1 108 77.8
EL10Ac3g06422 Beta vulgaris HOM05D003943 ORTHO05D004753 5.0e-39 165.6 135 64.4
HanXRQChr03g0072971 Helianthus annuus HOM05D003943 ORTHO05D004753 1.2e-37 161.0 92 84.8
BcaC01g01015 Brassica carinata HOM05D003943 ORTHO05D004753 2.3e-36 156.8 100 84.0
Lj9C540G13 Lonicera japonica HOM05D003943 ORTHO05D004753 4.4e-35 152.5 195 48.2
SHI12413 Sapria himalayana HOM05D003943 ORTHO05D004753 7.3e-30 135.2 81 84.0
Lsat_1_v5_gn_6_65181 Lactuca sativa HOM05D003943 ORTHO05D000236 1.4e-28 131.0 83 78.3
Actinidia21636 Actinidia chinensis HOM05D003943 ORTHO05D004753 2.0e-24 117.1 111 61.3
SHI12416 Sapria himalayana HOM05D001600 ORTHO05D001502 3.4e-19 99.8 64 75.0
RcHm_v2.0_Chr7g0216581 Rosa chinensis HOM05D003943 ORTHO05D004753 1.8e-12 77.4 81 54.3
SHI17182 Sapria himalayana HOM05D000004 ORTHO05D367797 6.4e-10 68.9 56 62.5
C03p87270 Brassica napus HOM05D000836 ORTHO05D000709 1.4e-09 67.8 44 81.8
SHI30650 Sapria himalayana HOM05D004596 ORTHO05D005853 1.2e-08 64.7 62 56.5
Nitab4.5_0006519g0020 Nicotiana tabacum HOM05D000032 ORTHO05D005217 3.5e-08 63.2 42 78.6
BcaC05g26689 Brassica carinata HOM05D003943 ORTHO05D004753 6.0e-08 62.4 38 76.3
CAN.G1001.28 Capsicum annuum HOM05D003943 ORTHO05D005733 1.0e-07 61.6 59 54.2
C04p30500 Brassica napus HOM05D002284 ORTHO05D033292 1.3e-07 61.2 34 85.3
BolC4t24585H Brassica oleracea HOM05D002284 ORTHO05D033292 2.5e-06 57.0 34 79.4
SHI32256 Sapria himalayana HOM05D003943 ORTHO05D001502 4.3e-06 56.2 36 69.4


User provided reference genes

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