Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.06FJIN Arachis hypogaea HOM05D004986 ORTHO05D005898 6.3e-32 140.2 73 100.0
arahy.Tifrunner.gnm1.ann1.757MF4 Arachis hypogaea HOM05D004986 ORTHO05D005898 6.3e-32 140.2 73 100.0
Lalb_Chr05g0214931 Lupinus albus HOM05D004986 ORTHO05D005898 3.8e-21 104.4 66 81.8
VMungo0331G1669 Vigna mungo HOM05D004986 ORTHO05D005898 7.2e-20 100.1 65 78.5
Phvul.010G020700 Phaseolus vulgaris HOM05D004986 ORTHO05D005898 6.8e-18 93.6 59 79.7
Ca_02840_v3 Cicer arietinum L. HOM05D004986 ORTHO05D005898 1.5e-17 92.4 64 76.6
arahy.Tifrunner.gnm1.ann1.H550X0 Arachis hypogaea HOM05D004986 ORTHO05D005898 4.4e-17 90.9 56 82.1
Medtr8g073110 Medicago truncatula HOM05D004986 ORTHO05D005898 4.4e-17 90.9 64 76.6
arahy.Tifrunner.gnm1.ann1.UZ6AL0 Arachis hypogaea HOM05D004986 ORTHO05D005898 5.7e-17 90.5 56 82.1
Glyma.16G112300 Glycine max HOM05D004986 ORTHO05D005898 5.7e-17 90.5 64 75.0
Glyma.09G196600 Glycine max HOM05D004986 ORTHO05D005898 1.3e-16 89.4 65 72.3
Lj3g0020964 Lotus japonicus HOM05D004986 ORTHO05D005898 1.7e-16 89.0 63 76.2
Psat4g105800 Pisum sativum HOM05D004986 ORTHO05D005898 2.8e-16 88.2 58 77.6
FAN23G2177 Fragaria x ananassa HOM05D004986 ORTHO05D005898 3.7e-16 87.8 63 69.8
FAN26G2552 Fragaria x ananassa HOM05D004986 ORTHO05D005898 3.7e-16 87.8 63 69.8
FAN28G2129 Fragaria x ananassa HOM05D004986 ORTHO05D005898 3.7e-16 87.8 63 69.8
Thecc.01G002600 Theobroma cacao HOM05D004986 ORTHO05D005898 3.7e-16 87.8 65 67.7
RcHm_v2.0_Chr2g0096901 Rosa chinensis HOM05D004986 ORTHO05D005898 8.3e-16 86.7 61 72.1
Gorai.003G001100 Gossypium raimondii HOM05D004986 ORTHO05D005898 1.1e-15 86.3 59 71.2
Prupe.7G185600 Prunus persica HOM05D004986 ORTHO05D005898 1.1e-15 86.3 63 69.8
FvH4_1g10130 Fragaria vesca HOM05D004986 ORTHO05D005898 1.8e-15 85.5 63 68.3
FAN19G1207 Fragaria x ananassa HOM05D004986 ORTHO05D005898 1.8e-15 85.5 63 68.3
FAN23G1121 Fragaria x ananassa HOM05D004986 ORTHO05D005898 1.8e-15 85.5 63 68.3
Gohir.D03G000700 Gossypium hirsutum HOM05D004986 ORTHO05D005898 2.4e-15 85.1 59 69.5
CsaV3_4G027660 Cucumis sativus L. HOM05D004986 ORTHO05D005898 3.2e-15 84.7 55 76.4
Haze_03636 Corylus avellana HOM05D004986 ORTHO05D005898 5.4e-15 84.0 59 72.9
Gohir.A02G179000 Gossypium hirsutum HOM05D004986 ORTHO05D005898 5.4e-15 84.0 59 67.8
Sed0027663 Sechium edule HOM05D004986 ORTHO05D005898 5.4e-15 84.0 56 76.8
Cfa007104 Carpinus fangiana HOM05D004986 ORTHO05D005898 7.0e-15 83.6 59 72.9
Gohir.D02G061000 Gossypium hirsutum HOM05D004986 ORTHO05D005898 7.0e-15 83.6 59 67.8
Gorai.005G068600 Gossypium raimondii HOM05D004986 ORTHO05D005898 7.0e-15 83.6 59 67.8
Gohir.A02G055800 Gossypium hirsutum HOM05D004986 ORTHO05D005898 9.2e-15 83.2 59 67.8
MD15G1228500 Malus domestica HOM05D004986 ORTHO05D005898 1.2e-14 82.8 63 66.7
CiPaw.07G000800 Carya illinoinensis HOM05D004986 ORTHO05D005898 1.6e-14 82.4 56 75.0
Duzib106G1274 Durio zibethinus HOM05D004986 ORTHO05D005898 2.7e-14 81.6 63 66.7
AUR62006055 Chenopodium quinoa HOM05D004986 ORTHO05D005898 3.5e-14 81.3 60 66.7
MELO3C026343.2 Cucumis melo HOM05D004986 ORTHO05D005898 3.5e-14 81.3 51 80.4
ClCG04G005010 Citrullus lanatus HOM05D004986 ORTHO05D005898 4.6e-14 80.9 51 80.4
Nn5g31026 Nelumbo nucifera HOM05D004986 ORTHO05D005898 4.6e-14 80.9 55 76.4
GSVIVG01022308001 Vitis vinifera HOM05D004986 ORTHO05D005898 4.6e-14 80.9 64 67.2
Dinv28304 Davidia involucrata HOM05D004986 ORTHO05D005898 5.9e-14 80.5 61 67.2
QL11p035166 Quercus lobata HOM05D004986 ORTHO05D005898 5.9e-14 80.5 59 67.8
Actinidia32993 Actinidia chinensis HOM05D004986 ORTHO05D005898 7.8e-14 80.1 61 67.2
Ah.10g026930 Amaranthus hybridus HOM05D004986 ORTHO05D005898 7.8e-14 80.1 59 66.1
Cpa.g.sc91.49 Carica papaya HOM05D004986 ORTHO05D005898 7.8e-14 80.1 56 69.6
TWI53G0851 Tripterygium wilfordii HOM05D004986 ORTHO05D005898 7.8e-14 80.1 57 71.9
Atru.chr3.37 Acer truncatum HOM05D004986 ORTHO05D005898 1.0e-13 79.7 56 71.4
Cc07_g12070 Coffea canephora HOM05D004986 ORTHO05D005898 1.0e-13 79.7 56 71.4
THA.LOC104826450 Tarenaya hassleriana HOM05D004986 ORTHO05D005898 1.0e-13 79.7 67 62.7
Lj2C503G0 Lonicera japonica HOM05D004986 ORTHO05D005898 1.3e-13 79.3 61 67.2
Manes.02G115500 Manihot esculenta HOM05D004986 ORTHO05D005898 1.3e-13 79.3 50 80.0
Actinidia22885 Actinidia chinensis HOM05D004986 ORTHO05D005898 1.7e-13 79.0 61 65.6
Os04g0584800 Oryza sativa ssp. japonica HOM05D004986 ORTHO05D005898 1.7e-13 79.0 60 68.3
TAR628G0962 Trochodendron aralioides HOM05D004986 ORTHO05D005898 1.7e-13 79.0 56 71.4
Atru.chr10.1816 Acer truncatum HOM05D004986 ORTHO05D005898 2.3e-13 78.6 60 65.0
Atru.chr10.1831 Acer truncatum HOM05D004986 ORTHO05D005898 2.3e-13 78.6 60 65.0
Oeu002901.1 Olea europaea HOM05D004986 ORTHO05D005898 2.3e-13 78.6 58 69.0
CARHR257450 Cardamine hirsuta HOM05D004986 ORTHO05D005898 2.9e-13 78.2 59 64.4
Ciclev10025602m.g Citrus clementina HOM05D004986 ORTHO05D005898 2.9e-13 78.2 61 63.9
Eucgr.I02210 Eucalyptus grandis HOM05D004986 ORTHO05D005898 2.9e-13 78.2 51 76.5
Rhsim10G0191900 Rhododendron simsii HOM05D004986 ORTHO05D005898 2.9e-13 78.2 61 65.6
CSS0007723 Camellia sinensis var. sinensis HOM05D004986 ORTHO05D005898 3.9e-13 77.8 62 62.9
ECA240G4103 Erigeron canadensis HOM05D004986 ORTHO05D005898 3.9e-13 77.8 62 67.7
AL8G45680 Arabidopsis lyrata HOM05D004986 ORTHO05D005898 5.0e-13 77.4 54 70.4
vmacro20612 Vaccinium macrocarpon HOM05D004986 ORTHO05D005898 5.0e-13 77.4 61 65.6
Lsat_1_v5_gn_2_73561 Lactuca sativa HOM05D004986 ORTHO05D005898 6.6e-13 77.0 55 70.9
Carub.0008s2856 Capsella rubella HOM05D004986 ORTHO05D005898 8.6e-13 76.6 54 70.4
Atru.chr3.32 Acer truncatum HOM05D004986 ORTHO05D005898 1.1e-12 76.3 56 69.6
Aa31LG1G14460 Aethionema arabicum HOM05D004986 ORTHO05D005898 1.1e-12 76.3 56 67.9
AT5G65960 Arabidopsis thaliana HOM05D004986 ORTHO05D005898 1.1e-12 76.3 54 68.5
Dinv40206 Davidia involucrata HOM05D004986 ORTHO05D005898 1.1e-12 76.3 63 61.9
Sabra02G0136200 Salix brachista HOM05D004986 ORTHO05D005898 1.1e-12 76.3 49 77.6
BcaB04g20132 Brassica carinata HOM05D004986 ORTHO05D005898 1.5e-12 75.9 53 69.8
Thhalv10004346m.g Eutrema salsugineum HOM05D004986 ORTHO05D005898 1.5e-12 75.9 57 64.9
PGR119G1257 Punica granatum HOM05D004986 ORTHO05D005898 1.5e-12 75.9 63 63.5
Sp2g30730 Schrenkiella parvula HOM05D004986 ORTHO05D005898 1.5e-12 75.9 65 61.5
HanXRQChr10g0316221 Helianthus annuus HOM05D004986 ORTHO05D005898 1.9e-12 75.5 61 65.6
Sed0024004 Sechium edule HOM05D004986 ORTHO05D005898 1.9e-12 75.5 56 71.4
Migut.B01487 Erythranthe guttata HOM05D004986 ORTHO05D005898 2.5e-12 75.1 64 65.6
Hma1.2p1_0085F.1_g044450 Hydrangea macrophylla HOM05D004986 ORTHO05D005898 2.5e-12 75.1 59 67.8
PSO170G5246 Papaver somniferum HOM05D004986 ORTHO05D005898 2.5e-12 75.1 52 71.2
MSTRG.17107 Avicennia marina HOM05D004986 ORTHO05D005898 3.3e-12 74.7 65 60.0
Zm00001eb072790 Zea mays HOM05D004986 ORTHO05D005898 3.3e-12 74.7 60 66.7
BraA09t36669Z Brassica rapa HOM05D004986 ORTHO05D005898 4.3e-12 74.3 65 61.5
CANSAT21G0416 Cannabis sativa HOM05D004986 ORTHO05D005898 4.3e-12 74.3 66 57.6
COL.COLO4_34271 Corchorus olitorius HOM05D004986 ORTHO05D005898 4.3e-12 74.3 60 65.0
Nitab4.5_0000495g0010 Nicotiana tabacum HOM05D004986 ORTHO05D005898 4.3e-12 74.3 62 66.1
Hund21384 Selenicereus undatus HOM05D004986 ORTHO05D005898 4.3e-12 74.3 53 69.8
Nitab4.5_0004269g0070 Nicotiana tabacum HOM05D004986 ORTHO05D005898 5.6e-12 73.9 55 69.1
A09p10240 Brassica napus HOM05D004986 ORTHO05D005898 7.3e-12 73.6 67 62.7
DCAR_024399 Daucus carota HOM05D004986 ORTHO05D005898 7.3e-12 73.6 56 71.4
HanXRQChr13g0388311 Helianthus annuus HOM05D004986 ORTHO05D005898 7.3e-12 73.6 61 63.9
PGSC0003DMG400018667 Solanum tuberosum HOM05D004986 ORTHO05D005898 7.3e-12 73.6 55 69.1
SGA_v2.0_scaffold52G19267 Striga asiatica HOM05D004986 ORTHO05D005898 7.3e-12 73.6 54 70.4
Solyc03g032050.4 Solanum lycopersicum HOM05D004986 ORTHO05D005898 9.5e-12 73.2 63 65.1
Sopen03g005900 Solanum pennellii HOM05D004986 ORTHO05D005898 9.5e-12 73.2 63 65.1
BcaC04g23101 Brassica carinata HOM05D004986 ORTHO05D005898 1.2e-11 72.8 61 63.9
BolC9t54105H Brassica oleracea HOM05D004986 ORTHO05D005898 1.2e-11 72.8 61 63.9
Potri.002G177100 Populus trichocarpa HOM05D004986 ORTHO05D005898 1.2e-11 72.8 52 75.0
SalBow5G3763 Salvia bowleyana HOM05D004986 ORTHO05D005898 1.2e-11 72.8 59 62.7
HPP92_007280 Vanilla planifolia HOM05D004986 ORTHO05D005898 1.2e-11 72.8 52 67.3
CAN.G647.4 Capsicum annuum HOM05D004986 ORTHO05D005898 1.6e-11 72.4 63 65.1
MD02G1113100 Malus domestica HOM05D004986 ORTHO05D005898 1.6e-11 72.4 58 65.5
Peaxi162Scf00920g00114 Petunia axillaris HOM05D004986 ORTHO05D005898 1.6e-11 72.4 55 67.3
unitig_26.g8860 Utricularia gibba HOM05D004986 ORTHO05D005898 2.8e-11 71.6 56 64.3
CARHR281800 Cardamine hirsuta HOM05D004986 ORTHO05D005898 3.6e-11 71.2 50 70.0
Manes.01G157000 Manihot esculenta HOM05D004986 ORTHO05D005898 3.6e-11 71.2 50 68.0
EL10Ac3g05234 Beta vulgaris HOM05D004986 ORTHO05D005898 4.7e-11 70.9 55 65.5
C09p12150 Brassica napus HOM05D004986 ORTHO05D005898 4.7e-11 70.9 61 62.3
TAR381G0383 Trochodendron aralioides HOM05D004986 ORTHO05D005898 8.0e-11 70.1 50 72.0
SGA_v2.0_scaffold34G13577 Striga asiatica HOM05D004986 ORTHO05D005898 1.0e-10 69.7 63 57.1
SGA_v2.0_scaffold578G53029 Striga asiatica HOM05D004986 ORTHO05D005898 1.0e-10 69.7 63 57.1
Lj4g0017944 Lotus japonicus HOM05D004986 ORTHO05D005898 1.4e-10 69.3 38 89.5
Aqoxy6G01559 Aquilegia oxysepala HOM05D004986 ORTHO05D005898 4.0e-10 67.8 65 56.9
Sc05g0009010 Simmondsia chinensis HOM05D004986 ORTHO05D005898 6.8e-10 67.0 58 60.3
MBI13_g20494_MAGBIO Magnolia biondii HOM05D004986 ORTHO05D005898 8.9e-10 66.6 50 72.0
ATR0807G113 Amborella trichopoda HOM05D004986 ORTHO05D005898 2.0e-09 65.5 49 67.3
Oeu037412.2 Olea europaea HOM05D004986 ORTHO05D005898 3.4e-09 64.7 55 61.8
CDE04G0629 Ceratophyllum demersum HOM05D004986 ORTHO05D005898 4.1e-07 57.8 57 56.1
SEGI_13138 Sequoiadendron giganteum HOM05D004986 ORTHO05D005898 4.1e-07 57.8 48 56.2
Pp3c17_5460 Physcomitrium patens HOM05D004986 ORTHO05D005898 6.0e-06 53.9 49 59.2


User provided reference genes

Program Settings