Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.06CE9J Arachis hypogaea HOM05D004997 ORTHO05D005921 5.2e-67 257.7 140 100.0
arahy.Tifrunner.gnm1.ann1.FF119L Arachis hypogaea HOM05D004997 ORTHO05D005921 4.1e-56 221.5 137 89.1
Eucgr.E02397 Eucalyptus grandis HOM05D004997 ORTHO05D005921 2.1e-52 209.1 138 84.1
CSS0020008 Camellia sinensis var. sinensis HOM05D004997 ORTHO05D005921 4.7e-52 208.0 136 85.3
Duzib192G0549 Durio zibethinus HOM05D004997 ORTHO05D005921 4.7e-52 208.0 139 82.7
CANSAT35G1260 Cannabis sativa HOM05D004997 ORTHO05D005921 8.1e-52 207.2 139 82.7
Dinv32261 Davidia involucrata HOM05D004997 ORTHO05D005921 8.1e-52 207.2 136 83.8
Lj5g0010316 Lotus japonicus HOM05D004997 ORTHO05D005921 1.8e-51 206.1 136 84.6
SGA_v2.0_scaffold333G48998 Striga asiatica HOM05D004997 ORTHO05D005921 1.8e-51 206.1 140 80.0
Lalb_Chr05g0222161 Lupinus albus HOM05D004997 ORTHO05D005921 2.3e-51 205.7 135 85.2
Actinidia07691 Actinidia chinensis HOM05D004997 ORTHO05D005921 4.0e-51 204.9 136 83.8
Gohir.A10G040300 Gossypium hirsutum HOM05D004997 ORTHO05D005921 4.0e-51 204.9 140 80.7
Lj4g0009583 Lotus japonicus HOM05D004997 ORTHO05D005921 4.0e-51 204.9 136 83.8
VMungo0251G3606 Vigna mungo HOM05D004997 ORTHO05D005921 5.2e-51 204.5 136 83.8
Medtr5g055650 Medicago truncatula HOM05D004997 ORTHO05D005921 6.8e-51 204.1 136 82.4
Cfa000953 Carpinus fangiana HOM05D004997 ORTHO05D005921 1.5e-50 203.0 135 83.7
TWI38G1166 Tripterygium wilfordii HOM05D004997 ORTHO05D005921 1.5e-50 203.0 137 81.0
TWI38G0351 Tripterygium wilfordii HOM05D004997 ORTHO05D005921 2.0e-50 202.6 136 81.6
Glyma.12G006600 Glycine max HOM05D004997 ORTHO05D005921 2.6e-50 202.2 136 83.1
Gorai.011G043400 Gossypium raimondii HOM05D004997 ORTHO05D005921 2.6e-50 202.2 140 80.0
Phvul.002G321900 Phaseolus vulgaris HOM05D004997 ORTHO05D005921 2.6e-50 202.2 136 81.6
Glyma.08G046600 Glycine max HOM05D004997 ORTHO05D005921 3.4e-50 201.8 136 83.1
Psat2g084800 Pisum sativum HOM05D004997 ORTHO05D005921 4.4e-50 201.4 136 81.6
Thecc.06G151500 Theobroma cacao HOM05D004997 ORTHO05D005921 4.4e-50 201.4 140 80.0
Gohir.D05G151300 Gossypium hirsutum HOM05D004997 ORTHO05D005921 7.6e-50 200.7 140 79.3
Gorai.009G155300 Gossypium raimondii HOM05D004997 ORTHO05D005921 7.6e-50 200.7 140 79.3
Potri.004G131900 Populus trichocarpa HOM05D004997 ORTHO05D005921 7.6e-50 200.7 136 81.6
ECA233G0220 Erigeron canadensis HOM05D004997 ORTHO05D005921 1.7e-49 199.5 136 80.1
Migut.M00914 Erythranthe guttata HOM05D004997 ORTHO05D005921 1.7e-49 199.5 135 80.0
PSO339G4484 Papaver somniferum HOM05D004997 ORTHO05D005921 1.7e-49 199.5 138 79.7
SGA_v2.0_scaffold1G00167 Striga asiatica HOM05D004997 ORTHO05D005921 1.7e-49 199.5 135 80.0
TAR626G0896 Trochodendron aralioides HOM05D004997 ORTHO05D005921 1.7e-49 199.5 136 80.1
MSTRG.16239 Avicennia marina HOM05D004997 ORTHO05D005921 2.2e-49 199.1 135 80.0
Sed0006544 Sechium edule HOM05D004997 ORTHO05D005921 2.2e-49 199.1 138 80.4
THA.LOC104814295 Tarenaya hassleriana HOM05D004997 ORTHO05D005921 2.2e-49 199.1 138 79.0
Gohir.A05G148700 Gossypium hirsutum HOM05D004997 ORTHO05D005921 3.8e-49 198.4 140 79.3
CiPaw.10G092400 Carya illinoinensis HOM05D004997 ORTHO05D005921 4.9e-49 198.0 135 79.3
Nn4g24866 Nelumbo nucifera HOM05D004997 ORTHO05D005921 4.9e-49 198.0 138 79.7
PSO384G3576 Papaver somniferum HOM05D004997 ORTHO05D005921 4.9e-49 198.0 138 79.0
MELO3C002717.2 Cucumis melo HOM05D004997 ORTHO05D005921 6.4e-49 197.6 138 80.4
FAN11G3072 Fragaria x ananassa HOM05D004997 ORTHO05D005921 6.4e-49 197.6 139 79.1
THA.LOC104812669 Tarenaya hassleriana HOM05D004997 ORTHO05D005921 8.4e-49 197.2 138 78.3
Sed0005528 Sechium edule HOM05D004997 ORTHO05D005921 1.1e-48 196.8 138 79.7
Solyc08g016420.3 Solanum lycopersicum HOM05D004997 ORTHO05D005921 1.1e-48 196.8 136 77.2
Carub.0001s2824 Capsella rubella HOM05D004997 ORTHO05D005921 1.4e-48 196.4 138 76.8
Gohir.D10G041200 Gossypium hirsutum HOM05D004997 ORTHO05D005921 1.4e-48 196.4 140 78.6
Ciclev10017164m.g Citrus clementina HOM05D004997 ORTHO05D005921 1.9e-48 196.1 136 80.1
FvH4_3g05660 Fragaria vesca HOM05D004997 ORTHO05D005921 1.9e-48 196.1 139 78.4
CARHR029400 Cardamine hirsuta HOM05D004997 ORTHO05D005921 2.4e-48 195.7 138 77.5
MD05G1284500 Malus domestica HOM05D004997 ORTHO05D005921 4.1e-48 194.9 136 79.4
RcHm_v2.0_Chr5g0013981 Rosa chinensis HOM05D004997 ORTHO05D005921 4.1e-48 194.9 136 79.4
Sopen08g006800 Solanum pennellii HOM05D004997 ORTHO05D005921 4.1e-48 194.9 136 76.5
HanXRQChr11g0340951 Helianthus annuus HOM05D004997 ORTHO05D005921 5.4e-48 194.5 135 78.5
MSTRG.7483 Avicennia marina HOM05D004997 ORTHO05D005921 7.1e-48 194.1 135 78.5
MD10G1262900 Malus domestica HOM05D004997 ORTHO05D005921 7.1e-48 194.1 136 78.7
AL1G43880 Arabidopsis lyrata HOM05D004997 ORTHO05D005921 9.2e-48 193.7 138 75.4
CiPaw.09G124400 Carya illinoinensis HOM05D004997 ORTHO05D005921 9.2e-48 193.7 135 77.0
FAN21G2809 Fragaria x ananassa HOM05D004997 ORTHO05D005921 1.6e-47 193.0 136 78.7
GSVIVG01021444001 Vitis vinifera HOM05D004997 ORTHO05D005921 1.6e-47 193.0 133 78.9
AT1G29990 Arabidopsis thaliana HOM05D004997 ORTHO05D005921 2.1e-47 192.6 136 75.7
Prupe.4G079900 Prunus persica HOM05D004997 ORTHO05D005921 2.7e-47 192.2 136 77.9
Gorai.002G185400 Gossypium raimondii HOM05D004997 ORTHO05D005921 3.5e-47 191.8 139 77.7
Aqoxy3G00593 Aquilegia oxysepala HOM05D004997 ORTHO05D005921 6.0e-47 191.0 139 74.8
HanXRQChr01g0020611 Helianthus annuus HOM05D004997 ORTHO05D005921 1.0e-46 190.3 139 77.7
unitig_32.g11442 Utricularia gibba HOM05D004997 ORTHO05D005921 1.0e-46 190.3 134 76.9
Sp1g25870 Schrenkiella parvula HOM05D004997 ORTHO05D005921 1.3e-46 189.9 136 75.7
BcaC06g35482 Brassica carinata HOM05D004997 ORTHO05D005921 3.0e-46 188.7 140 72.9
BolC7t42045H Brassica oleracea HOM05D004997 ORTHO05D005921 3.0e-46 188.7 140 72.9
BcaB07g32600 Brassica carinata HOM05D004997 ORTHO05D005921 3.3e-45 185.3 138 72.5
A09p36530 Brassica napus HOM05D004997 ORTHO05D005921 3.3e-45 185.3 138 72.5
BraA09t39174Z Brassica rapa HOM05D004997 ORTHO05D005921 3.3e-45 185.3 138 72.5
Thhalv10009093m.g Eutrema salsugineum HOM05D004997 ORTHO05D005921 9.6e-45 183.7 138 73.2
TPR.G13287 Trifolium pratense HOM05D004997 ORTHO05D005921 9.6e-45 183.7 118 83.9
C05p28750 Brassica napus HOM05D004997 ORTHO05D005921 1.2e-44 183.3 138 71.7
BolC5t31593H Brassica oleracea HOM05D004997 ORTHO05D005921 1.2e-44 183.3 138 71.7
Manes.11G058500 Manihot esculenta HOM05D004997 ORTHO05D005921 1.6e-44 183.0 118 83.1
PGR042G1500 Punica granatum HOM05D004997 ORTHO05D005921 8.1e-44 180.6 136 74.3
Atru.chr10.1243 Acer truncatum HOM05D004997 ORTHO05D005921 1.4e-43 179.9 127 78.7
BcaB03g13847 Brassica carinata HOM05D004997 ORTHO05D005921 2.4e-43 179.1 140 71.4
HPP92_006252 Vanilla planifolia HOM05D004997 ORTHO05D005921 2.4e-43 179.1 136 69.9
FAN25G0101 Fragaria x ananassa HOM05D004997 ORTHO05D005921 3.1e-43 178.7 152 68.4
Duzib235G0692 Durio zibethinus HOM05D004997 ORTHO05D005921 5.2e-43 177.9 121 80.2
CDE02G0055 Ceratophyllum demersum HOM05D004997 ORTHO05D005921 2.6e-42 175.6 134 70.1
ClCG03G007080 Citrullus lanatus HOM05D004997 ORTHO05D005921 2.6e-42 175.6 193 57.5
Gohir.D01G100600 Gossypium hirsutum HOM05D004997 ORTHO05D005921 3.4e-42 175.3 130 76.2
CDE09G0791 Ceratophyllum demersum HOM05D004997 ORTHO05D005921 4.4e-42 174.9 134 70.1
Ah.09g232610 Amaranthus hybridus HOM05D000413 ORTHO05D000292 9.9e-42 173.7 116 80.2
A07p10100 Brassica napus HOM05D004997 ORTHO05D005921 1.3e-41 173.3 144 69.4
arahy.Tifrunner.gnm1.ann1.7IX92P Arachis hypogaea HOM05D004997 ORTHO05D005921 1.7e-41 172.9 92 100.0
Gorai.002G125400 Gossypium raimondii HOM05D004997 ORTHO05D005921 1.7e-41 172.9 130 75.4
SEGI_33388 Sequoiadendron giganteum HOM05D004997 ORTHO05D005921 3.8e-41 171.8 134 69.4
Lsat_1_v5_gn_1_91801 Lactuca sativa HOM05D004997 ORTHO05D005921 6.4e-41 171.0 114 81.6
CSS0046404 Camellia sinensis var. sinensis HOM05D004997 ORTHO05D005921 1.9e-40 169.5 113 83.2
CsaV3_1G032650 Cucumis sativus L. HOM05D004997 ORTHO05D005921 2.4e-40 169.1 120 75.8
Os02g0246300 Oryza sativa ssp. japonica HOM05D004997 ORTHO05D005921 3.2e-40 168.7 132 66.7
Hund21531 Selenicereus undatus HOM05D004997 ORTHO05D005921 4.2e-40 168.3 115 79.1
Rhsim13G0211800 Rhododendron simsii HOM05D004997 ORTHO05D005921 5.4e-40 167.9 112 83.0
EL10Ac8g19712 Beta vulgaris HOM05D004997 ORTHO05D005921 7.1e-40 167.5 165 59.4
CAN.G134.135 Capsicum annuum HOM05D004997 ORTHO05D000105 9.3e-40 167.2 115 75.7
DCAR_027919 Daucus carota HOM05D000413 ORTHO05D000292 2.1e-39 166.0 129 73.6
MBI07_g26358_MAGBIO Magnolia biondii HOM05D004997 ORTHO05D005921 2.1e-39 166.0 116 76.7
CAN.G134.136 Capsicum annuum HOM05D004997 ORTHO05D005921 2.3e-38 162.5 115 73.9
BcaC05g27010 Brassica carinata HOM05D004997 ORTHO05D005921 3.9e-38 161.8 120 71.7
Prupe.3G104900 Prunus persica HOM05D004997 ORTHO05D005921 3.9e-38 161.8 113 78.8
QL05p058391 Quercus lobata HOM05D004997 ORTHO05D005921 6.6e-38 161.0 136 68.4
BraA07t28803Z Brassica rapa HOM05D004997 ORTHO05D005921 2.5e-37 159.1 129 68.2
FAN16G0953 Fragaria x ananassa HOM05D004997 ORTHO05D005921 2.8e-36 155.6 113 74.3
ATR0743G157 Amborella trichopoda HOM05D004997 ORTHO05D005921 6.2e-36 154.5 118 70.3
Pp3c22_1770 Physcomitrium patens HOM05D004997 ORTHO05D005921 6.2e-36 154.5 134 59.7
Cc02_g37190 Coffea canephora HOM05D004997 ORTHO05D005921 1.1e-35 153.7 112 73.2
AagrBONN_evm.TU.Sc2ySwM_344.2433 Anthoceros agrestis HOM05D004997 ORTHO05D005921 1.8e-35 152.9 138 58.0
Oeu034156.1 Olea europaea HOM05D004997 ORTHO05D005921 1.8e-35 152.9 88 87.5
PGSC0003DMG400009647 Solanum tuberosum HOM05D004997 ORTHO05D005921 3.1e-35 152.1 90 83.3
Oeu052376.1 Olea europaea HOM05D004997 ORTHO05D005921 9.0e-35 150.6 88 85.2
C07p15580 Brassica napus HOM05D004997 ORTHO05D005921 1.5e-34 149.8 129 65.9
Dinv30737 Davidia involucrata HOM05D004997 ORTHO05D005921 4.5e-34 148.3 88 87.5
Sc17g0004940 Simmondsia chinensis HOM05D004997 ORTHO05D005921 4.5e-34 148.3 91 81.3
vmacro04021 Vaccinium macrocarpon HOM05D004997 ORTHO05D005921 4.5e-34 148.3 95 82.1
Aa31LG6G5670 Aethionema arabicum HOM05D004997 ORTHO05D005921 7.6e-34 147.5 138 63.0
Mapoly0006s0079 Marchantia polymorpha HOM05D004997 ORTHO05D005921 9.9e-34 147.1 135 57.8
COL.COLO4_31081 Corchorus olitorius HOM05D004997 ORTHO05D005921 1.7e-33 146.4 95 81.1
QL06p022817 Quercus lobata HOM05D004997 ORTHO05D005921 2.9e-33 145.6 117 71.8
Zm00001eb238610 Zea mays HOM05D004997 ORTHO05D005921 1.1e-32 143.7 132 61.4
CAN.G3523.1 Capsicum annuum HOM05D004997 ORTHO05D005921 7.1e-32 141.0 87 80.5
AUR62039776 Chenopodium quinoa HOM05D004997 ORTHO05D005921 9.3e-32 140.6 92 80.4
CAN.G134.137 Capsicum annuum HOM05D004997 ORTHO05D005921 1.6e-31 139.8 85 81.2
SMO367G0874 Selaginella moellendorffii HOM05D004997 ORTHO05D005921 6.0e-31 137.9 119 58.0
SEGI_19850 Sequoiadendron giganteum HOM05D004997 ORTHO05D005921 1.3e-30 136.7 86 80.2
Phvul.009G128800 Phaseolus vulgaris HOM05D004997 ORTHO05D005921 2.3e-30 136.0 95 81.1
Gohir.D01G149300 Gossypium hirsutum HOM05D004997 ORTHO05D005921 4.3e-29 131.7 103 72.8
SalBow8G3614 Salvia bowleyana HOM05D004997 ORTHO05D005921 4.3e-29 131.7 98 71.4
Peaxi162Scf01211g00142 Petunia axillaris HOM05D004997 ORTHO05D005921 5.6e-29 131.3 96 76.0
Actinidia39569 Actinidia chinensis HOM05D004997 ORTHO05D005921 2.1e-28 129.4 136 61.0
Lsat_1_v5_gn_5_30841 Lactuca sativa HOM05D004997 ORTHO05D005921 1.1e-27 127.1 72 87.5
CDE02G2003 Ceratophyllum demersum HOM05D004997 ORTHO05D005921 3.8e-25 118.6 98 64.3
Nitab4.5_0010327g0020 Nicotiana tabacum HOM05D004997 ORTHO05D005921 8.4e-25 117.5 88 71.6
Nitab4.5_0000348g0240 Nicotiana tabacum HOM05D004997 ORTHO05D005921 1.9e-24 116.3 88 71.6
Haze_05586 Corylus avellana HOM05D004997 ORTHO05D005921 8.7e-22 107.5 79 77.2
Sabra04G0085700 Salix brachista HOM05D004997 ORTHO05D005921 6.2e-20 101.3 71 76.1
AUR62030207 Chenopodium quinoa HOM05D004997 ORTHO05D005921 3.1e-19 99.0 69 76.8
PRCOL_00000028 Prasinoderma coloniale HOM05D004997 ORTHO05D005921 4.5e-18 95.1 134 40.3
Manes.09G021201 Manihot esculenta HOM05D004997 ORTHO05D005921 3.8e-17 92.0 116 51.7
MCO01G210 Micromonas commoda HOM05D004997 ORTHO05D005921 8.4e-17 90.9 127 40.2
arahy.Tifrunner.gnm1.ann1.MPJ1GQ Arachis hypogaea HOM05D004997 ORTHO05D005921 5.5e-16 88.2 54 88.9
Zm00001eb258640 Zea mays HOM05D004997 ORTHO05D005921 1.6e-15 86.7 75 60.0
Zm00001eb151600 Zea mays HOM05D000394 ORTHO05D016690 4.6e-15 85.1 72 61.1
Zm00001eb310800 Zea mays HOM05D000394 ORTHO05D016690 1.3e-14 83.6 72 59.7
Zm00001eb139040 Zea mays HOM05D000901 ORTHO05D005921 2.3e-14 82.8 85 54.1
Zm00001eb225310 Zea mays HOM05D000901 ORTHO05D005921 6.7e-14 81.3 74 58.1
Zm00001eb269380 Zea mays HOM05D000901 ORTHO05D005921 1.5e-13 80.1 73 58.9
Haze_05599 Corylus avellana HOM05D004997 ORTHO05D005921 4.3e-13 78.6 42 92.9
Cre12.g502750 Chlamydomonas reinhardtii HOM05D004997 ORTHO05D005921 5.7e-13 78.2 130 39.2
Zm00001eb344510 Zea mays HOM05D000901 ORTHO05D000768 1.3e-12 77.0 76 53.9
Cfa022129 Carpinus fangiana HOM05D004997 ORTHO05D005921 1.4e-08 63.5 128 32.8
CBR_g48714 Chara braunii HOM05D004997 ORTHO05D005921 2.5e-08 62.8 132 34.8


User provided reference genes

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