Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.04YHM3 Arachis hypogaea HOM05D004239 ORTHO05D005191 1.8e-38 162.2 83 100.0
arahy.Tifrunner.gnm1.ann1.5NK7V3 Arachis hypogaea HOM05D004239 ORTHO05D005191 1.1e-24 116.3 100 69.0
arahy.Tifrunner.gnm1.ann1.VWT09S Arachis hypogaea HOM05D004239 ORTHO05D005191 1.1e-24 116.3 100 69.0
CiPaw.07G016500 Carya illinoinensis HOM05D004239 ORTHO05D005191 2.6e-13 78.6 100 50.0
Cfa006576 Carpinus fangiana HOM05D004239 ORTHO05D005191 7.5e-13 77.0 100 49.0
Ca_09364_v3 Cicer arietinum L. HOM05D004239 ORTHO05D005191 7.5e-13 77.0 101 52.5
Haze_04207 Corylus avellana HOM05D004239 ORTHO05D005191 7.5e-13 77.0 100 49.0
Glyma.03G239000 Glycine max HOM05D004239 ORTHO05D005191 7.5e-13 77.0 100 51.0
Lj1g0017751 Lotus japonicus HOM05D004239 ORTHO05D005191 7.5e-13 77.0 99 54.5
MD12G1220700 Malus domestica HOM05D004239 ORTHO05D005191 9.8e-13 76.6 100 50.0
Prupe.6G327600 Prunus persica HOM05D004239 ORTHO05D005191 9.8e-13 76.6 100 49.0
Phvul.006G092900 Phaseolus vulgaris HOM05D004239 ORTHO05D005191 1.3e-12 76.3 100 52.0
TPR.G33198 Trifolium pratense HOM05D004239 ORTHO05D005191 2.8e-12 75.1 102 52.0
Medtr7g113660 Medicago truncatula HOM05D004239 ORTHO05D005191 3.7e-12 74.7 101 51.5
Lalb_Chr04g0260811 Lupinus albus HOM05D004239 ORTHO05D005191 4.8e-12 74.3 100 50.0
Aqoxy2G03302 Aquilegia oxysepala HOM05D004239 ORTHO05D005191 6.3e-12 73.9 102 50.0
MD04G1206900 Malus domestica HOM05D004239 ORTHO05D005191 6.3e-12 73.9 100 49.0
Nn4g26228 Nelumbo nucifera HOM05D004239 ORTHO05D005191 6.3e-12 73.9 101 49.5
VMungo0540G1286 Vigna mungo HOM05D004239 ORTHO05D005191 8.3e-12 73.6 100 52.0
Nitab4.5_0002031g0070 Nicotiana tabacum HOM05D004239 ORTHO05D005191 1.4e-11 72.8 100 51.0
Nitab4.5_0005388g0060 Nicotiana tabacum HOM05D004239 ORTHO05D005191 1.4e-11 72.8 100 51.0
Peaxi162Scf00037g00226 Petunia axillaris HOM05D004239 ORTHO05D005191 1.4e-11 72.8 101 50.5
Solyc01g098840.3 Solanum lycopersicum HOM05D004239 ORTHO05D005191 1.4e-11 72.8 101 48.5
Sopen01g042380 Solanum pennellii HOM05D004239 ORTHO05D005191 1.4e-11 72.8 101 48.5
Nitab4.5_0009323g0010 Nicotiana tabacum HOM05D004239 ORTHO05D005191 2.4e-11 72.0 101 50.5
Manes.08G122300 Manihot esculenta HOM05D004239 ORTHO05D005191 4.1e-11 71.2 99 46.5
PGSC0003DMG401028586 Solanum tuberosum HOM05D004239 ORTHO05D005191 4.1e-11 71.2 101 47.5
MSTRG.5107 Avicennia marina HOM05D004239 ORTHO05D005191 5.4e-11 70.9 100 48.0
CANSAT54G0620 Cannabis sativa HOM05D004239 ORTHO05D005191 5.4e-11 70.9 100 47.0
PSO063G4628 Papaver somniferum HOM05D004239 ORTHO05D005191 5.4e-11 70.9 101 49.5
QL03p006503 Quercus lobata HOM05D004239 ORTHO05D005191 5.4e-11 70.9 100 48.0
Manes.09G165700 Manihot esculenta HOM05D004239 ORTHO05D005191 7.0e-11 70.5 99 49.5
Hund21687 Selenicereus undatus HOM05D004239 ORTHO05D005191 7.0e-11 70.5 97 49.5
Migut.N01997 Erythranthe guttata HOM05D004239 ORTHO05D005191 9.1e-11 70.1 100 47.0
Oeu038249.1 Olea europaea HOM05D004239 ORTHO05D005191 1.2e-10 69.7 100 46.0
Psat3g010600 Pisum sativum HOM05D004239 ORTHO05D005191 1.6e-10 69.3 101 48.5
EL10Ac4g09340 Beta vulgaris HOM05D004239 ORTHO05D005191 2.0e-10 68.9 97 49.5
Oeu027738.1 Olea europaea HOM05D004239 ORTHO05D005191 2.0e-10 68.9 100 45.0
Peaxi162Scf00471g00018 Petunia axillaris HOM05D004239 ORTHO05D005191 2.0e-10 68.9 101 49.5
TWI36G1635 Tripterygium wilfordii HOM05D004239 ORTHO05D005191 2.0e-10 68.9 100 48.0
TAR365G0701 Trochodendron aralioides HOM05D004239 ORTHO05D005191 4.5e-10 67.8 100 47.0
SalBow3G0110 Salvia bowleyana HOM05D004239 ORTHO05D005191 5.9e-10 67.4 100 45.0
TWI12G0310 Tripterygium wilfordii HOM05D004239 ORTHO05D005191 5.9e-10 67.4 100 48.0
Cc00_g15600 Coffea canephora HOM05D004239 ORTHO05D005191 7.7e-10 67.0 100 45.0
AT5G27450 Arabidopsis thaliana HOM05D004239 ORTHO05D005191 1.3e-09 66.2 101 45.5
Lsat_1_v5_gn_4_139401 Lactuca sativa HOM05D004239 ORTHO05D005191 1.3e-09 66.2 101 46.5
Sed0007278 Sechium edule HOM05D004239 ORTHO05D005191 1.7e-09 65.9 100 45.0
CAN.G1077.21 Capsicum annuum HOM05D004239 ORTHO05D005191 2.2e-09 65.5 100 48.0
FAN02G3565 Fragaria x ananassa HOM05D004239 ORTHO05D005191 2.2e-09 65.5 100 45.0
BraA09t36167Z Brassica rapa HOM05D004239 ORTHO05D005191 2.9e-09 65.1 101 43.6
FvH4_6g05650 Fragaria vesca HOM05D004239 ORTHO05D005191 2.9e-09 65.1 100 45.0
FAN14G1612 Fragaria x ananassa HOM05D004239 ORTHO05D005191 2.9e-09 65.1 100 45.0
FAN14G2823 Fragaria x ananassa HOM05D004239 ORTHO05D005191 2.9e-09 65.1 100 45.0
TAR636G0428 Trochodendron aralioides HOM05D004239 ORTHO05D005191 2.9e-09 65.1 100 48.0
A09p05280 Brassica napus HOM05D004239 ORTHO05D005191 3.8e-09 64.7 102 45.1
CSS0041428 Camellia sinensis var. sinensis HOM05D004239 ORTHO05D005191 3.8e-09 64.7 100 46.0
FAN05G0638 Fragaria x ananassa HOM05D004239 ORTHO05D005191 3.8e-09 64.7 100 46.0
FAN05G5256 Fragaria x ananassa HOM05D004239 ORTHO05D005191 3.8e-09 64.7 100 46.0
Dinv23953 Davidia involucrata HOM05D004239 ORTHO05D005191 5.0e-09 64.3 100 45.0
RcHm_v2.0_Chr3g0454501 Rosa chinensis HOM05D004239 ORTHO05D005191 5.0e-09 64.3 100 45.0
SGA_v2.0_scaffold81G26082 Striga asiatica HOM05D004239 ORTHO05D005191 8.5e-09 63.5 100 44.0
AL6G39560 Arabidopsis lyrata HOM05D004239 ORTHO05D005191 1.1e-08 63.2 101 44.6
BcaB04g19671 Brassica carinata HOM05D004239 ORTHO05D005191 1.1e-08 63.2 103 43.7
Potri.013G024000 Populus trichocarpa HOM05D004239 ORTHO05D005191 1.1e-08 63.2 100 46.0
Carub.0006s2508 Capsella rubella HOM05D004239 ORTHO05D005191 1.5e-08 62.8 101 42.6
Thhalv10004396m.g Eutrema salsugineum HOM05D004239 ORTHO05D005191 1.5e-08 62.8 102 46.1
Lj9A25G19 Lonicera japonica HOM05D004239 ORTHO05D005191 1.5e-08 62.8 98 46.9
Lj9A26G17 Lonicera japonica HOM05D004239 ORTHO05D005191 1.5e-08 62.8 98 46.9
Thecc.05G305000 Theobroma cacao HOM05D004239 ORTHO05D005191 1.5e-08 62.8 98 44.9
Actinidia23624 Actinidia chinensis HOM05D004239 ORTHO05D005191 1.9e-08 62.4 100 44.0
Dinv40275 Davidia involucrata HOM05D004239 ORTHO05D005191 1.9e-08 62.4 100 44.0
FAN09G3705 Fragaria x ananassa HOM05D004239 ORTHO05D005191 1.9e-08 62.4 100 44.0
Sabra13G0025600 Salix brachista HOM05D004239 ORTHO05D005191 3.2e-08 61.6 100 44.0
Sp2g20670 Schrenkiella parvula HOM05D004239 ORTHO05D005191 3.2e-08 61.6 101 41.6
A02p38630 Brassica napus HOM05D004239 ORTHO05D005191 4.2e-08 61.2 101 40.6
C09p05760 Brassica napus HOM05D004239 ORTHO05D005191 4.2e-08 61.2 102 44.1
BraA02t08839Z Brassica rapa HOM05D004239 ORTHO05D005191 4.2e-08 61.2 101 40.6
CARHR186060 Cardamine hirsuta HOM05D004239 ORTHO05D005191 4.2e-08 61.2 101 42.6
Nn1g02198 Nelumbo nucifera HOM05D004239 ORTHO05D005191 4.2e-08 61.2 101 44.6
Potri.005G035300 Populus trichocarpa HOM05D004239 ORTHO05D005191 4.2e-08 61.2 100 45.0
Rhsim05G0142700 Rhododendron simsii HOM05D004239 ORTHO05D005191 4.2e-08 61.2 100 42.0
AUR62005132 Chenopodium quinoa HOM05D004239 ORTHO05D005191 5.5e-08 60.8 98 45.9
MELO3C004278.2 Cucumis melo HOM05D004239 ORTHO05D005191 5.5e-08 60.8 100 43.0
C02p58120 Brassica napus HOM05D004239 ORTHO05D005191 7.2e-08 60.5 101 40.6
BolC2t11880H Brassica oleracea HOM05D004239 ORTHO05D005191 7.2e-08 60.5 101 40.6
MELO3C004281.2 Cucumis melo HOM05D004239 ORTHO05D005191 7.2e-08 60.5 100 44.0
DCAR_029425 Daucus carota HOM05D004239 ORTHO05D005191 7.2e-08 60.5 100 47.0
Eucgr.B01993 Eucalyptus grandis HOM05D004239 ORTHO05D005191 7.2e-08 60.5 100 44.0
Gohir.A11G295900 Gossypium hirsutum HOM05D004239 ORTHO05D005191 7.2e-08 60.5 98 44.9
unitig_0.g2376 Utricularia gibba HOM05D004239 ORTHO05D005191 7.2e-08 60.5 100 43.0
BcaC04g23678 Brassica carinata HOM05D004239 ORTHO05D005191 9.4e-08 60.1 102 43.1
BolC9t53503H Brassica oleracea HOM05D004239 ORTHO05D005191 9.4e-08 60.1 102 43.1
Duzib106G0174 Durio zibethinus HOM05D004239 ORTHO05D005191 9.4e-08 60.1 98 43.9
vmacro19629 Vaccinium macrocarpon HOM05D004239 ORTHO05D005191 9.4e-08 60.1 100 41.0
CsaV3_2G005140 Cucumis sativus L. HOM05D004239 ORTHO05D005191 1.2e-07 59.7 100 43.0
Gohir.D11G311000 Gossypium hirsutum HOM05D004239 ORTHO05D005191 1.2e-07 59.7 98 43.9
Gorai.007G342800 Gossypium raimondii HOM05D004239 ORTHO05D005191 1.2e-07 59.7 98 43.9
vmacro05023 Vaccinium macrocarpon HOM05D004239 ORTHO05D005191 1.2e-07 59.7 100 45.0
vmacro23128 Vaccinium macrocarpon HOM05D004239 ORTHO05D005191 1.2e-07 59.7 100 45.0
Aa31LG11G9210 Aethionema arabicum HOM05D004239 ORTHO05D005191 1.6e-07 59.3 102 44.1
Cpa.g.sc48.35 Carica papaya HOM05D004239 ORTHO05D005191 1.6e-07 59.3 100 44.0
ECA234G2741 Erigeron canadensis HOM05D004239 ORTHO05D005191 1.6e-07 59.3 104 40.4
Gohir.D11G274300 Gossypium hirsutum HOM05D004239 ORTHO05D005191 1.6e-07 59.3 97 45.4
AUR62000841 Chenopodium quinoa HOM05D004239 ORTHO05D005191 2.1e-07 58.9 96 46.9
Gorai.007G296000 Gossypium raimondii HOM05D004239 ORTHO05D005191 2.1e-07 58.9 98 44.9
Lsat_1_v5_gn_2_64361 Lactuca sativa HOM05D004239 ORTHO05D005191 2.1e-07 58.9 116 38.8
Sc09g0003220 Simmondsia chinensis HOM05D004239 ORTHO05D005191 2.1e-07 58.9 100 42.0
THA.LOC104802807 Tarenaya hassleriana HOM05D004239 ORTHO05D005191 2.1e-07 58.9 102 45.1
Glyma.19G236200 Glycine max HOM05D004239 ORTHO05D005191 3.6e-07 58.2 61 54.1
HPP92_020860 Vanilla planifolia HOM05D004239 ORTHO05D005191 3.6e-07 58.2 99 42.4
Sed0017775 Sechium edule HOM05D004239 ORTHO05D005191 4.7e-07 57.8 100 43.0
Zm00001eb209270 Zea mays HOM05D004239 ORTHO05D005191 4.7e-07 57.8 107 40.2
ClCG02G015900 Citrullus lanatus HOM05D004239 ORTHO05D005191 6.1e-07 57.4 100 43.0
ClCG10G005450 Citrullus lanatus HOM05D004239 ORTHO05D005191 6.1e-07 57.4 102 45.1
Sed0006954 Sechium edule HOM05D004239 ORTHO05D005191 6.1e-07 57.4 100 45.0
Zm00001eb209470 Zea mays HOM05D004239 ORTHO05D005191 6.1e-07 57.4 107 40.2
HanXRQChr09g0259671 Helianthus annuus HOM05D004239 ORTHO05D005191 8.0e-07 57.0 100 42.0
BcaC03g17788 Brassica carinata HOM05D004239 ORTHO05D005191 1.0e-06 56.6 101 39.6
Ciclev10001383m.g Citrus clementina HOM05D004239 ORTHO05D005191 1.4e-06 56.2 100 41.0
GSVIVG01000037001 Vitis vinifera HOM05D004239 ORTHO05D005191 5.2e-06 54.3 99 42.4


User provided reference genes

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