Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.043Q1E Arachis hypogaea HOM05D005922 ORTHO05D006934 3.1e-125 451.8 230 100.0
arahy.Tifrunner.gnm1.ann1.F0VD4J Arachis hypogaea HOM05D005922 ORTHO05D006934 2.3e-48 196.4 115 85.2
arahy.Tifrunner.gnm1.ann1.QNE0FJ Arachis hypogaea HOM05D002181 ORTHO05D003287 9.6e-26 121.3 65 89.2
arahy.Tifrunner.gnm1.ann1.05ZMZX Arachis hypogaea HOM05D005922 ORTHO05D006934 6.2e-25 118.6 63 90.5
arahy.Tifrunner.gnm1.ann1.VAQ7MX Arachis hypogaea HOM05D034879 ORTHO05D006934 1.3e-22 110.9 64 84.4
arahy.Tifrunner.gnm1.ann1.62WV2A Arachis hypogaea HOM05D005922 ORTHO05D006934 1.4e-21 107.5 55 89.1
arahy.Tifrunner.gnm1.ann1.QG6U7W Arachis hypogaea HOM05D005922 ORTHO05D006934 1.4e-21 107.5 55 89.1
arahy.Tifrunner.gnm1.ann1.39MP9Z Arachis hypogaea HOM05D002181 ORTHO05D003287 7.8e-20 101.7 49 93.9
arahy.Tifrunner.gnm1.ann1.DV72QU Arachis hypogaea HOM05D005922 ORTHO05D006934 7.8e-20 101.7 50 92.0
arahy.Tifrunner.gnm1.ann1.XTWJ7M Arachis hypogaea HOM05D002181 ORTHO05D006934 1.0e-19 101.3 49 93.9
arahy.Tifrunner.gnm1.ann1.4JU6QM Arachis hypogaea HOM05D034879 ORTHO05D006934 7.3e-18 95.1 68 75.0
VMungo0251G3333 Vigna mungo HOM05D005922 ORTHO05D006934 8.1e-17 91.7 51 78.4
Lj4g0028223 Lotus japonicus HOM05D005922 ORTHO05D006934 1.1e-16 91.3 50 80.0
Lalb_Chr13g0293631 Lupinus albus HOM05D005922 ORTHO05D006934 1.1e-16 91.3 49 79.6
Psat7g084400 Pisum sativum HOM05D005922 ORTHO05D006934 1.8e-16 90.5 50 78.0
TPR.G5128 Trifolium pratense HOM05D005922 ORTHO05D006934 3.1e-16 89.7 50 78.0
arahy.Tifrunner.gnm1.ann1.8F1CK2 Arachis hypogaea HOM05D007513 ORTHO05D008148 6.9e-16 88.6 46 93.5
arahy.Tifrunner.gnm1.ann1.LDCV9W Arachis hypogaea HOM05D007513 ORTHO05D008148 6.9e-16 88.6 46 93.5
arahy.Tifrunner.gnm1.ann1.P2RW0X Arachis hypogaea HOM05D007513 ORTHO05D008148 6.9e-16 88.6 46 93.5
arahy.Tifrunner.gnm1.ann1.QIRY5C Arachis hypogaea HOM05D007513 ORTHO05D008148 6.9e-16 88.6 46 93.5
Ca_11580_v3 Cicer arietinum L. HOM05D005922 ORTHO05D006934 6.9e-16 88.6 50 74.0
Glyma.08G093700 Glycine max HOM05D005922 ORTHO05D006934 1.2e-15 87.8 49 77.6
Aqoxy3G04113 Aquilegia oxysepala HOM05D005922 ORTHO05D006934 2.0e-15 87.0 49 75.5
Nn4g24501 Nelumbo nucifera HOM05D005922 ORTHO05D006934 2.0e-15 87.0 50 74.0
arahy.Tifrunner.gnm1.ann1.S3QGNL Arachis hypogaea HOM05D000640 ORTHO05D008148 2.6e-15 86.7 47 89.4
Aa31LG10G3720 Aethionema arabicum HOM05D005922 ORTHO05D006934 5.8e-15 85.5 49 77.6
Phvul.002G181600 Phaseolus vulgaris HOM05D005922 ORTHO05D006934 7.6e-15 85.1 49 73.5
CSS0049283 Camellia sinensis var. sinensis HOM05D005922 ORTHO05D006934 9.9e-15 84.7 49 75.5
Haze_10819 Corylus avellana HOM05D005922 ORTHO05D006934 9.9e-15 84.7 49 73.5
Dinv14365 Davidia involucrata HOM05D001297 ORTHO05D001135 9.9e-15 84.7 49 73.5
Eucgr.B02658 Eucalyptus grandis HOM05D005922 ORTHO05D006934 9.9e-15 84.7 49 71.4
Lsat_1_v5_gn_4_23861 Lactuca sativa HOM05D005922 ORTHO05D006934 9.9e-15 84.7 49 73.5
BcaC08g45999 Brassica carinata HOM05D005922 ORTHO05D006934 1.3e-14 84.3 49 75.5
C06p37940 Brassica napus HOM05D005922 ORTHO05D006934 1.3e-14 84.3 49 75.5
BolC6t38893H Brassica oleracea HOM05D005922 ORTHO05D006934 1.3e-14 84.3 49 75.5
Cfa015069 Carpinus fangiana HOM05D005922 ORTHO05D006934 1.3e-14 84.3 49 73.5
Actinidia20108 Actinidia chinensis HOM05D005922 ORTHO05D006934 1.7e-14 84.0 49 71.4
Ah.03g138110 Amaranthus hybridus HOM05D005922 ORTHO05D006934 1.7e-14 84.0 55 60.0
arahy.Tifrunner.gnm1.ann1.QIF42D Arachis hypogaea HOM05D007513 ORTHO05D008148 1.7e-14 84.0 45 91.1
THA.LOC104809799 Tarenaya hassleriana HOM05D005922 ORTHO05D006934 1.7e-14 84.0 49 73.5
Ciclev10015473m.g Citrus clementina HOM05D005922 ORTHO05D006934 2.2e-14 83.6 49 73.5
Migut.L00620 Erythranthe guttata HOM05D005922 ORTHO05D006934 2.2e-14 83.6 49 71.4
Rhsim09G0086000 Rhododendron simsii HOM05D005922 ORTHO05D006934 2.2e-14 83.6 49 73.5
HPP92_016714 Vanilla planifolia HOM05D005922 ORTHO05D006934 2.2e-14 83.6 49 73.5
A07p32170 Brassica napus HOM05D005922 ORTHO05D006934 2.9e-14 83.2 49 75.5
BraA07t30847Z Brassica rapa HOM05D005922 ORTHO05D006934 2.9e-14 83.2 49 75.5
BcaB03g15398 Brassica carinata HOM05D005922 ORTHO05D006934 3.8e-14 82.8 49 73.5
BcaC08g45997 Brassica carinata HOM05D005922 ORTHO05D006934 3.8e-14 82.8 49 73.5
Thhalv10018688m.g Eutrema salsugineum HOM05D005922 ORTHO05D006934 3.8e-14 82.8 49 73.5
Lj3A860T49 Lonicera japonica HOM05D005922 ORTHO05D006934 3.8e-14 82.8 49 73.5
SalBow7G4797 Salvia bowleyana HOM05D005922 ORTHO05D006934 3.8e-14 82.8 49 73.5
GSVIVG01011600001 Vitis vinifera HOM05D005922 ORTHO05D006934 3.8e-14 82.8 49 73.5
AL2G26830 Arabidopsis lyrata HOM05D005922 ORTHO05D006934 4.9e-14 82.4 49 71.4
CiPaw.06G059000 Carya illinoinensis HOM05D005922 ORTHO05D006934 4.9e-14 82.4 49 71.4
ECA234G0994 Erigeron canadensis HOM05D005922 ORTHO05D006934 4.9e-14 82.4 49 71.4
Gohir.D04G188200 Gossypium hirsutum HOM05D005922 ORTHO05D006934 4.9e-14 82.4 51 70.6
HanXRQChr17g0566161 Helianthus annuus HOM05D005922 ORTHO05D006934 4.9e-14 82.4 49 69.4
Nitab4.5_0001935g0050 Nicotiana tabacum HOM05D005922 ORTHO05D006934 4.9e-14 82.4 51 66.7
TAR622G0311 Trochodendron aralioides HOM05D005922 ORTHO05D006934 6.4e-14 82.0 49 71.4
Atru.chr11.736 Acer truncatum HOM05D005922 ORTHO05D006934 8.4e-14 81.6 49 73.5
MSTRG.418 Avicennia marina HOM05D005922 ORTHO05D006934 8.4e-14 81.6 49 71.4
Potri.008G139000 Populus trichocarpa HOM05D005922 ORTHO05D006934 8.4e-14 81.6 49 69.4
PGSC0003DMG400022790 Solanum tuberosum HOM05D005922 ORTHO05D006934 8.4e-14 81.6 49 69.4
CANSAT78G1412 Cannabis sativa HOM05D005922 ORTHO05D006934 1.1e-13 81.3 48 68.8
CAN.G282.103 Capsicum annuum HOM05D005922 ORTHO05D006934 1.1e-13 81.3 49 67.3
Cc11_g05840 Coffea canephora HOM05D005922 ORTHO05D006934 1.1e-13 81.3 49 71.4
Carub.0002s1456 Capsella rubella HOM05D005922 ORTHO05D006934 1.4e-13 80.9 49 71.4
CARHR060740 Cardamine hirsuta HOM05D005922 ORTHO05D006934 1.4e-13 80.9 49 73.5
Sp5g23080 Schrenkiella parvula HOM05D005922 ORTHO05D006934 1.4e-13 80.9 49 69.4
arahy.Tifrunner.gnm1.ann1.N7EVBW Arachis hypogaea HOM05D007513 ORTHO05D008148 2.4e-13 80.1 44 90.9
Ca_18552_v3 Cicer arietinum L. HOM05D007513 ORTHO05D008148 2.4e-13 80.1 46 82.6
Solyc01g005100.4 Solanum lycopersicum HOM05D005922 ORTHO05D006934 2.4e-13 80.1 49 67.3
Sopen01g001120 Solanum pennellii HOM05D005922 ORTHO05D006934 2.4e-13 80.1 49 67.3
DCAR_026820 Daucus carota HOM05D005922 ORTHO05D006934 3.2e-13 79.7 49 69.4
Nitab4.5_0000521g0110 Nicotiana tabacum HOM05D005922 ORTHO05D006934 3.2e-13 79.7 49 67.3
PSO017G1338 Papaver somniferum HOM05D005922 ORTHO05D006934 3.2e-13 79.7 49 65.3
PSO478G3575 Papaver somniferum HOM05D005922 ORTHO05D006934 3.2e-13 79.7 49 65.3
Psat6g076840 Pisum sativum HOM05D007513 ORTHO05D008148 3.2e-13 79.7 49 77.6
ATR0598G299 Amborella trichopoda HOM05D005922 ORTHO05D006934 4.2e-13 79.3 49 67.3
QL03p038994 Quercus lobata HOM05D005922 ORTHO05D006934 4.2e-13 79.3 49 67.3
AUR62002964 Chenopodium quinoa HOM05D005922 ORTHO05D006934 5.4e-13 79.0 49 63.3
Gohir.A04G143900 Gossypium hirsutum HOM05D005922 ORTHO05D006934 5.4e-13 79.0 48 68.8
Psat6g024240 Pisum sativum HOM05D007513 ORTHO05D008148 5.4e-13 79.0 47 78.7
PGR102G1589 Punica granatum HOM05D005922 ORTHO05D006934 5.4e-13 79.0 48 66.7
Gorai.012G183700 Gossypium raimondii HOM05D005922 ORTHO05D006934 7.1e-13 78.6 51 68.6
Sabra08G0105600 Salix brachista HOM05D005922 ORTHO05D006934 7.1e-13 78.6 49 67.3
Manes.17G088400 Manihot esculenta HOM05D005922 ORTHO05D006934 9.3e-13 78.2 49 65.3
Sc10g0003730 Simmondsia chinensis HOM05D005922 ORTHO05D006934 1.2e-12 77.8 49 61.2
SGA_v2.0_scaffold57G20105 Striga asiatica HOM05D005922 ORTHO05D006934 1.2e-12 77.8 48 68.8
AUR62007770 Chenopodium quinoa HOM05D005922 ORTHO05D006934 2.1e-12 77.0 49 61.2
RcHm_v2.0_Chr4g0442081 Rosa chinensis HOM05D005922 ORTHO05D006934 2.1e-12 77.0 49 67.3
Hund05787 Selenicereus undatus HOM05D005922 ORTHO05D006934 2.1e-12 77.0 48 64.6
MD16G1013700 Malus domestica HOM05D005922 ORTHO05D006934 2.7e-12 76.6 49 67.3
Medtr4g088715 Medicago truncatula HOM05D007513 ORTHO05D008148 2.7e-12 76.6 46 80.4
EL10Ac6g14554 Beta vulgaris HOM05D005922 ORTHO05D006934 6.0e-12 75.5 49 59.2
ClCG11G001170 Citrullus lanatus HOM05D005922 ORTHO05D006934 6.0e-12 75.5 49 65.3
unitig_748.g7591 Utricularia gibba HOM05D005922 ORTHO05D006934 6.0e-12 75.5 49 69.4
FvH4_4g33040 Fragaria vesca HOM05D005922 ORTHO05D006934 7.9e-12 75.1 49 67.3
FAN12G4156 Fragaria x ananassa HOM05D005922 ORTHO05D006934 7.9e-12 75.1 49 67.3
FAN17G1819 Fragaria x ananassa HOM05D005922 ORTHO05D006934 1.0e-11 74.7 49 67.3
MELO3C020028.2 Cucumis melo HOM05D005922 ORTHO05D006934 1.3e-11 74.3 49 63.3
CsaV3_5G013220 Cucumis sativus L. HOM05D005922 ORTHO05D006934 1.3e-11 74.3 49 63.3
TWI74G0639 Tripterygium wilfordii HOM05D005922 ORTHO05D006934 2.3e-11 73.6 49 67.3
arahy.Tifrunner.gnm1.ann1.X3Z0KH Arachis hypogaea HOM05D003009 ORTHO05D008148 3.9e-11 72.8 46 73.9
Mapoly0075s0019 Marchantia polymorpha HOM05D005922 ORTHO05D006934 3.9e-11 72.8 49 57.1
Phvul.005G004100 Phaseolus vulgaris HOM05D007513 ORTHO05D008148 3.9e-11 72.8 50 68.0
TPR.G24448 Trifolium pratense HOM05D007513 ORTHO05D008148 3.9e-11 72.8 46 78.3
FAN22G1644 Fragaria x ananassa HOM05D005922 ORTHO05D006934 5.1e-11 72.4 49 67.3
Os03g0238700 Oryza sativa ssp. japonica HOM05D005922 ORTHO05D006934 5.1e-11 72.4 49 61.2
CBR_g16882 Chara braunii HOM05D005922 ORTHO05D006934 6.7e-11 72.0 51 58.8
DCAR_017173 Daucus carota HOM05D007513 ORTHO05D008148 6.7e-11 72.0 46 73.9
FAN07G1633 Fragaria x ananassa HOM05D005922 ORTHO05D006934 8.7e-11 71.6 49 65.3
Glyma.06G321800 Glycine max HOM05D007513 ORTHO05D008148 8.7e-11 71.6 47 72.3
ClCG10G015420 Citrullus lanatus HOM05D007513 ORTHO05D008148 1.5e-10 70.9 49 67.3
Nitab4.5_0001294g0040 Nicotiana tabacum HOM05D005922 ORTHO05D006934 1.5e-10 70.9 51 56.9
Sed0026869 Sechium edule HOM05D005922 ORTHO05D006934 1.9e-10 70.5 49 61.2
Dinv26918 Davidia involucrata HOM05D007513 ORTHO05D008148 2.5e-10 70.1 56 62.5
Pp3c27_7680 Physcomitrium patens HOM05D005922 ORTHO05D006934 2.5e-10 70.1 49 57.1
COL.COLO4_27589 Corchorus olitorius HOM05D005922 ORTHO05D006934 3.3e-10 69.7 67 52.2
Nitab4.5_0001294g0050 Nicotiana tabacum HOM05D005922 ORTHO05D006934 3.3e-10 69.7 44 65.9
BcaB05g23450 Brassica carinata HOM05D005922 ORTHO05D006934 4.3e-10 69.3 49 59.2
CsaV3_3G041080 Cucumis sativus L. HOM05D007513 ORTHO05D008148 4.3e-10 69.3 59 59.3
TWI09G0373 Tripterygium wilfordii HOM05D007513 ORTHO05D008148 4.3e-10 69.3 49 63.3
arahy.Tifrunner.gnm1.ann1.NLBN4J Arachis hypogaea HOM05D007513 ORTHO05D008148 5.6e-10 68.9 43 76.7
CANSAT01G0833 Cannabis sativa HOM05D007513 ORTHO05D008148 5.6e-10 68.9 50 64.0
CiPaw.02G003300 Carya illinoinensis HOM05D007513 ORTHO05D008148 5.6e-10 68.9 49 65.3
Dinv04064 Davidia involucrata HOM05D007513 ORTHO05D008148 5.6e-10 68.9 46 71.7
Eucgr.A01208 Eucalyptus grandis HOM05D007513 ORTHO05D008148 5.6e-10 68.9 46 71.7
Hma1.2p1_0730F.1_g209790 Hydrangea macrophylla HOM05D007513 ORTHO05D008148 7.4e-10 68.6 54 63.0
MELO3C030975.2 Cucumis melo HOM05D007513 ORTHO05D008148 9.6e-10 68.2 46 69.6
Glyma.04G112900 Glycine max HOM05D007513 ORTHO05D008148 9.6e-10 68.2 45 71.1
AagrBONN_evm.TU.Sc2ySwM_117.2043 Anthoceros agrestis HOM05D005922 ORTHO05D006934 1.3e-09 67.8 49 53.1
Manes.13G112700 Manihot esculenta HOM05D007513 ORTHO05D008148 1.6e-09 67.4 49 63.3
VMungo1080G1633 Vigna mungo HOM05D007513 ORTHO05D008148 2.1e-09 67.0 47 66.0
Actinidia03699 Actinidia chinensis HOM05D007513 ORTHO05D008148 2.8e-09 66.6 46 69.6
Ciclev10023109m.g Citrus clementina HOM05D007513 ORTHO05D008148 6.2e-09 65.5 46 65.2
Cc04_g16170 Coffea canephora HOM05D007513 ORTHO05D008148 6.2e-09 65.5 46 67.4
Sed0010624 Sechium edule HOM05D007513 ORTHO05D008148 6.2e-09 65.5 49 61.2
Potri.009G004400 Populus trichocarpa HOM05D007513 ORTHO05D008148 1.1e-08 64.7 49 61.2
Thecc.02G304700 Theobroma cacao HOM05D005922 ORTHO05D006934 1.8e-08 63.9 41 68.3
TWI73G0368 Tripterygium wilfordii HOM05D007513 ORTHO05D008148 1.8e-08 63.9 46 63.0
CSS0003656 Camellia sinensis var. sinensis HOM05D007513 ORTHO05D008148 2.4e-08 63.5 49 59.2
CSS0045444 Camellia sinensis var. sinensis HOM05D007513 ORTHO05D008148 2.4e-08 63.5 49 59.2
HanXRQChr08g0219071 Helianthus annuus HOM05D007513 ORTHO05D008148 2.4e-08 63.5 49 63.3
TAR381G0870 Trochodendron aralioides HOM05D001879 ORTHO05D007648 2.4e-08 63.5 46 63.0
arahy.Tifrunner.gnm1.ann1.PACU1L Arachis hypogaea HOM05D000690 ORTHO05D001022 4.0e-08 62.8 32 87.5
HanXRQChr08g0219141 Helianthus annuus HOM05D007513 ORTHO05D008148 4.0e-08 62.8 49 63.3
Aqoxy7G03437 Aquilegia oxysepala HOM05D007513 ORTHO05D008148 5.3e-08 62.4 46 63.0
DCAR_013160 Daucus carota HOM05D007513 ORTHO05D008148 5.3e-08 62.4 104 43.3
Lalb_Chr08g0235081 Lupinus albus HOM05D007513 ORTHO05D008148 9.0e-08 61.6 46 60.9
Nitab4.5_0000714g0120 Nicotiana tabacum HOM05D007513 ORTHO05D008148 1.2e-07 61.2 52 53.8
unitig_0.g544 Utricularia gibba HOM05D007513 ORTHO05D008148 1.2e-07 61.2 46 60.9
Lalb_Chr24g0403261 Lupinus albus HOM05D007513 ORTHO05D008148 1.5e-07 60.8 46 60.9
SHI04278 Sapria himalayana HOM05D005922 ORTHO05D006934 2.0e-07 60.5 40 62.5
CDE07G2080 Ceratophyllum demersum HOM05D007513 ORTHO05D008148 2.6e-07 60.1 55 52.7
Lsat_1_v5_gn_8_17020 Lactuca sativa HOM05D007513 ORTHO05D008148 3.4e-07 59.7 46 60.9
ECA233G3995 Erigeron canadensis HOM05D007513 ORTHO05D008148 4.5e-07 59.3 49 57.1
Lsat_1_v5_gn_8_19701 Lactuca sativa HOM05D007513 ORTHO05D008148 4.5e-07 59.3 46 60.9
SGA_v2.0_scaffold486G52374 Striga asiatica HOM05D007513 ORTHO05D008148 4.5e-07 59.3 63 50.8
Os03g0205150 Oryza sativa ssp. japonica HOM05D007513 ORTHO05D008148 5.8e-07 58.9 46 58.7
Nitab4.5_0001417g0120 Nicotiana tabacum HOM05D007513 ORTHO05D008148 7.6e-07 58.5 49 55.1
PGR102G1378 Punica granatum HOM05D007513 ORTHO05D008148 7.6e-07 58.5 49 55.1
GSVIVG01023476001 Vitis vinifera HOM05D007513 ORTHO05D008148 7.6e-07 58.5 49 57.1
vmacro07203 Vaccinium macrocarpon HOM05D007513 ORTHO05D008148 1.0e-06 58.2 47 61.7
Rhsim11G0028000 Rhododendron simsii HOM05D007513 ORTHO05D008148 1.7e-06 57.4 46 60.9
Peaxi162Scf00118g02024 Petunia axillaris HOM05D007513 ORTHO05D008148 2.2e-06 57.0 48 52.1
vmacro14398 Vaccinium macrocarpon HOM05D007513 ORTHO05D008148 2.2e-06 57.0 57 52.6
Atru.chr3.182 Acer truncatum HOM05D007513 ORTHO05D008148 2.9e-06 56.6 46 56.5
AUR62016920 Chenopodium quinoa HOM05D007513 ORTHO05D008148 2.9e-06 56.6 46 58.7
CSS0005454 Camellia sinensis var. sinensis HOM05D007513 ORTHO05D008148 3.8e-06 56.2 48 56.2
CSS0011696 Camellia sinensis var. sinensis HOM05D007513 ORTHO05D008148 3.8e-06 56.2 48 56.2
Thecc.01G071100 Theobroma cacao HOM05D007513 ORTHO05D008148 4.9e-06 55.8 55 47.3
Atru.chr3.153 Acer truncatum HOM05D007513 ORTHO05D008148 6.4e-06 55.5 46 54.3
Carub.0004s0224 Capsella rubella HOM05D007513 ORTHO05D008148 8.4e-06 55.1 50 48.0
MD15G1295400 Malus domestica HOM05D007513 ORTHO05D008148 8.4e-06 55.1 49 53.1
Sc16g0003000 Simmondsia chinensis HOM05D007513 ORTHO05D008148 8.4e-06 55.1 49 51.0


User provided reference genes

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