Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.03IC02 Arachis hypogaea HOM05D000403 ORTHO05D000350 3.5e-35 151.0 72 100.0
Glyma.06G222500 Glycine max HOM05D000403 ORTHO05D000350 7.1e-20 100.1 60 78.3
Psat6g198680 Pisum sativum HOM05D000403 ORTHO05D000350 1.2e-19 99.4 60 78.3
VMungo1309G0955 Vigna mungo HOM05D000403 ORTHO05D000350 1.2e-19 99.4 60 78.3
Ca_02669_v3 Cicer arietinum L. HOM05D000403 ORTHO05D000350 1.6e-19 99.0 60 78.3
Phvul.009G197800 Phaseolus vulgaris HOM05D000403 ORTHO05D000350 2.1e-19 98.6 60 75.0
arahy.Tifrunner.gnm1.ann1.DYEK8W Arachis hypogaea HOM05D000403 ORTHO05D000350 2.7e-19 98.2 62 77.4
TPR.G21251 Trifolium pratense HOM05D000403 ORTHO05D000350 3.5e-19 97.8 60 76.7
arahy.Tifrunner.gnm1.ann1.W1G8YE Arachis hypogaea HOM05D000403 ORTHO05D000350 6.1e-19 97.1 61 77.0
Psat1g027280 Pisum sativum HOM05D000403 ORTHO05D000350 6.1e-19 97.1 60 76.7
Medtr0011s0280 Medicago truncatula HOM05D000403 ORTHO05D000350 3.0e-18 94.7 60 73.3
Lj3g0023823 Lotus japonicus HOM05D000403 ORTHO05D000350 3.9e-18 94.4 60 73.3
Lj5g0018126 Lotus japonicus HOM05D000403 ORTHO05D000350 5.1e-18 94.0 60 73.3
Lj5g0020426 Lotus japonicus HOM05D000403 ORTHO05D000350 8.7e-18 93.2 60 73.3
Lj5g0005223 Lotus japonicus HOM05D000403 ORTHO05D000350 1.3e-16 89.4 60 70.0
Cfa003369 Carpinus fangiana HOM05D000403 ORTHO05D000350 4.1e-15 84.3 60 65.0
Haze_25583 Corylus avellana HOM05D000403 ORTHO05D000350 9.0e-15 83.2 64 62.5
GSVIVG01029269001 Vitis vinifera HOM05D000403 ORTHO05D000350 2.2e-13 78.6 60 60.0
Cc06_g19030 Coffea canephora HOM05D000403 ORTHO05D000350 8.5e-13 76.6 62 53.2
AUR62013363 Chenopodium quinoa HOM05D000403 ORTHO05D000350 1.1e-12 76.3 58 56.9
AUR62013364 Chenopodium quinoa HOM05D000403 ORTHO05D000350 1.1e-12 76.3 58 56.9
CiPaw.07G009100 Carya illinoinensis HOM05D000403 ORTHO05D000350 1.4e-12 75.9 58 53.4
DCAR_020921 Daucus carota HOM05D000403 ORTHO05D000350 1.9e-12 75.5 66 54.5
Manes.05G119600 Manihot esculenta HOM05D000403 ORTHO05D000350 1.9e-12 75.5 60 55.0
GSVIVG01029270001 Vitis vinifera HOM05D000403 ORTHO05D000350 1.9e-12 75.5 60 58.3
AUR62011126 Chenopodium quinoa HOM05D000403 ORTHO05D000350 3.2e-12 74.7 61 52.5
Prupe.7G242400 Prunus persica HOM05D000403 ORTHO05D000350 5.5e-12 73.9 60 53.3
Lj7A629T70 Lonicera japonica HOM05D000403 ORTHO05D000350 1.2e-11 72.8 61 54.1
CsaV3_1G030030 Cucumis sativus L. HOM05D000403 ORTHO05D000350 1.6e-11 72.4 65 52.3
AUR62013365 Chenopodium quinoa HOM05D000403 ORTHO05D000350 2.1e-11 72.0 59 54.2
Haze_25589 Corylus avellana HOM05D000403 ORTHO05D000350 2.1e-11 72.0 60 51.7
Haze_25619 Corylus avellana HOM05D000403 ORTHO05D000350 2.1e-11 72.0 60 51.7
Actinidia40469 Actinidia chinensis HOM05D000403 ORTHO05D000350 2.7e-11 71.6 60 50.0
Ciclev10008330m.g Citrus clementina HOM05D000403 ORTHO05D000350 2.7e-11 71.6 61 50.8
MD15G1173200 Malus domestica HOM05D000403 ORTHO05D000350 3.6e-11 71.2 58 53.4
Dinv22101 Davidia involucrata HOM05D000403 ORTHO05D000350 4.6e-11 70.9 60 50.0
Actinidia21989 Actinidia chinensis HOM05D000403 ORTHO05D000350 6.1e-11 70.5 68 47.1
CSS0045380 Camellia sinensis var. sinensis HOM05D000403 ORTHO05D000350 6.1e-11 70.5 66 48.5
HanXRQChr09g0242241 Helianthus annuus HOM05D000403 ORTHO05D000350 7.9e-11 70.1 60 51.7
MD15G1173400 Malus domestica HOM05D000403 ORTHO05D000350 7.9e-11 70.1 58 53.4
EL10Ac8g18649 Beta vulgaris HOM05D000403 ORTHO05D000350 1.0e-10 69.7 57 52.6
EL10Ac8g18650 Beta vulgaris HOM05D000403 ORTHO05D000350 1.0e-10 69.7 57 52.6
CSS0003862 Camellia sinensis var. sinensis HOM05D000403 ORTHO05D000350 1.4e-10 69.3 65 47.7
Cfa003368 Carpinus fangiana HOM05D000403 ORTHO05D000350 1.4e-10 69.3 60 50.0
TWI34G0854 Tripterygium wilfordii HOM05D000403 ORTHO05D000350 1.4e-10 69.3 60 48.3
TAR383G0350 Trochodendron aralioides HOM05D000403 ORTHO05D000350 1.4e-10 69.3 63 47.6
DCAR_009188 Daucus carota HOM05D000403 ORTHO05D000350 1.8e-10 68.9 60 53.3
Thecc.09G126100 Theobroma cacao HOM05D000403 ORTHO05D000350 1.8e-10 68.9 66 45.5
MELO3C010352.2 Cucumis melo HOM05D000403 ORTHO05D000350 2.3e-10 68.6 61 52.5
Peaxi162Scf00047g00084 Petunia axillaris HOM05D000403 ORTHO05D000350 2.3e-10 68.6 59 50.8
CANSAT11G2512 Cannabis sativa HOM05D000403 ORTHO05D000350 3.0e-10 68.2 62 50.0
Sed0005217 Sechium edule HOM05D000403 ORTHO05D000350 3.0e-10 68.2 61 50.8
Sed0005292 Sechium edule HOM05D000403 ORTHO05D000350 3.0e-10 68.2 61 50.8
Sed0006463 Sechium edule HOM05D000403 ORTHO05D000350 3.0e-10 68.2 61 50.8
Sed0023094 Sechium edule HOM05D000403 ORTHO05D000350 3.0e-10 68.2 61 50.8
Atru.chr12.2287 Acer truncatum HOM05D000403 ORTHO05D000350 3.9e-10 67.8 60 46.7
HanXRQChr03g0062761 Helianthus annuus HOM05D000403 ORTHO05D000350 3.9e-10 67.8 64 48.4
GSVIVG01015527001 Vitis vinifera HOM05D000403 ORTHO05D000350 3.9e-10 67.8 58 50.0
Ah.09g226130 Amaranthus hybridus HOM05D000403 ORTHO05D000350 5.1e-10 67.4 62 51.6
EL10Ac8g18651 Beta vulgaris HOM05D000403 ORTHO05D000350 5.1e-10 67.4 58 46.6
Cpa.g.sc75.38 Carica papaya HOM05D000403 ORTHO05D000350 5.1e-10 67.4 60 51.7
Duzib168G0622 Durio zibethinus HOM05D000403 ORTHO05D000350 5.1e-10 67.4 66 45.5
Eucgr.C01170 Eucalyptus grandis HOM05D000403 ORTHO05D000350 5.1e-10 67.4 60 48.3
CAN.G3369.2 Capsicum annuum HOM05D000403 ORTHO05D000350 6.7e-10 67.0 60 51.7
CAN.G500.36 Capsicum annuum HOM05D000403 ORTHO05D000350 6.7e-10 67.0 60 51.7
Eucgr.C01169 Eucalyptus grandis HOM05D000403 ORTHO05D000350 6.7e-10 67.0 62 46.8
HanXRQChr03g0062701 Helianthus annuus HOM05D000403 ORTHO05D000350 6.7e-10 67.0 60 50.0
MD15G1173300 Malus domestica HOM05D000403 ORTHO05D000350 6.7e-10 67.0 58 51.7
Manes.05G120000 Manihot esculenta HOM05D000403 ORTHO05D000350 8.8e-10 66.6 60 48.3
Nitab4.5_0002398g0020 Nicotiana tabacum HOM05D000403 ORTHO05D000350 8.8e-10 66.6 58 51.7
CSS0012100 Camellia sinensis var. sinensis HOM05D000403 ORTHO05D000350 1.1e-09 66.2 65 46.2
MBI04_g08011_MAGBIO Magnolia biondii HOM05D000403 ORTHO05D000350 1.5e-09 65.9 59 49.2
TWI32G0267 Tripterygium wilfordii HOM05D000403 ORTHO05D000350 1.5e-09 65.9 60 46.7
Aqoxy7G02239 Aquilegia oxysepala HOM05D000403 ORTHO05D000350 2.0e-09 65.5 62 45.2
Gohir.A05G016500 Gossypium hirsutum HOM05D000403 ORTHO05D000350 2.0e-09 65.5 60 46.7
Cc06_g19020 Coffea canephora HOM05D000403 ORTHO05D000350 2.5e-09 65.1 61 47.5
FAN17G2970 Fragaria x ananassa HOM05D000403 ORTHO05D000350 2.5e-09 65.1 59 52.5
RcHm_v2.0_Chr2g0088551 Rosa chinensis HOM05D000403 ORTHO05D000350 2.5e-09 65.1 61 47.5
ECA240G3868 Erigeron canadensis HOM05D000403 ORTHO05D000350 4.3e-09 64.3 60 46.7
FvH4_5g03870 Fragaria vesca HOM05D000403 ORTHO05D000350 4.3e-09 64.3 59 50.8
Nn8g39444 Nelumbo nucifera HOM05D000403 ORTHO05D000350 4.3e-09 64.3 60 46.7
CAN.G500.43 Capsicum annuum HOM05D000403 ORTHO05D000350 5.7e-09 63.9 60 48.3
ECA240G1070 Erigeron canadensis HOM05D000403 ORTHO05D000350 5.7e-09 63.9 60 48.3
Eucgr.C01171 Eucalyptus grandis HOM05D000403 ORTHO05D000350 5.7e-09 63.9 61 45.9
Nitab4.5_0000941g0160 Nicotiana tabacum HOM05D000403 ORTHO05D000350 5.7e-09 63.9 58 51.7
Potri.006G070000 Populus trichocarpa HOM05D000403 ORTHO05D000350 5.7e-09 63.9 61 49.2
CAN.G500.35 Capsicum annuum HOM05D000403 ORTHO05D000350 9.7e-09 63.2 60 48.3
ClCG06G011080 Citrullus lanatus HOM05D000403 ORTHO05D000350 9.7e-09 63.2 61 52.5
ECA172G0002 Erigeron canadensis HOM05D000402 ORTHO05D000263 9.7e-09 63.2 58 48.3
Oeu018468.1 Olea europaea HOM05D000403 ORTHO05D000350 9.7e-09 63.2 60 46.7
CAN.G500.34 Capsicum annuum HOM05D000403 ORTHO05D000350 1.3e-08 62.8 61 47.5
CAN.G500.37 Capsicum annuum HOM05D000403 ORTHO05D000350 1.7e-08 62.4 60 48.3
CAN.G500.42 Capsicum annuum HOM05D000403 ORTHO05D000350 1.7e-08 62.4 60 48.3
FvH4_4g10130 Fragaria vesca HOM05D000403 ORTHO05D000350 1.7e-08 62.4 57 52.6
Gohir.D05G017500 Gossypium hirsutum HOM05D000403 ORTHO05D000350 1.7e-08 62.4 60 45.0
Gorai.009G017900 Gossypium raimondii HOM05D000403 ORTHO05D000350 1.7e-08 62.4 60 45.0
Sopen09g034600 Solanum pennellii HOM05D000403 ORTHO05D000350 2.2e-08 62.0 60 45.0
CiPaw.03G243800 Carya illinoinensis HOM05D000403 ORTHO05D000350 2.8e-08 61.6 57 49.1
Solyc09g091700.4 Solanum lycopersicum HOM05D000403 ORTHO05D000350 2.8e-08 61.6 60 46.7
vmacro20555 Vaccinium macrocarpon HOM05D000403 ORTHO05D000350 2.8e-08 61.6 67 43.3
CAN.G500.33 Capsicum annuum HOM05D000403 ORTHO05D000350 3.7e-08 61.2 60 48.3
ECA240G0384 Erigeron canadensis HOM05D000403 ORTHO05D000350 3.7e-08 61.2 64 45.3
CDE01G0766 Ceratophyllum demersum HOM05D000403 ORTHO05D000350 6.3e-08 60.5 59 47.5
Eucgr.C01168 Eucalyptus grandis HOM05D000403 ORTHO05D000350 8.2e-08 60.1 52 48.1
HanXRQChr09g0242231 Helianthus annuus HOM05D000403 ORTHO05D000350 8.2e-08 60.1 53 50.9
PGR142G2362 Punica granatum HOM05D000403 ORTHO05D000350 8.2e-08 60.1 60 43.3
CANSAT25G1418 Cannabis sativa HOM05D000403 ORTHO05D000350 1.1e-07 59.7 62 48.4
CAN.G500.40 Capsicum annuum HOM05D000403 ORTHO05D000350 1.1e-07 59.7 60 46.7
Cc03_g15640 Coffea canephora HOM05D000403 ORTHO05D000350 1.1e-07 59.7 58 46.6
HanXRQChr03g0062741 Helianthus annuus HOM05D000403 ORTHO05D000350 1.1e-07 59.7 55 49.1
Sabra06G0052200 Salix brachista HOM05D000403 ORTHO05D000350 1.1e-07 59.7 61 49.2
PGSC0003DMG400038453 Solanum tuberosum HOM05D000403 ORTHO05D000350 1.1e-07 59.7 60 46.7
Haze_11152 Corylus avellana HOM05D000403 ORTHO05D000350 1.4e-07 59.3 58 44.8
Lsat_1_v5_gn_7_45340 Lactuca sativa HOM05D000403 ORTHO05D000350 1.4e-07 59.3 53 47.2
arahy.Tifrunner.gnm1.ann1.F8KNAT Arachis hypogaea HOM05D000403 ORTHO05D000350 1.8e-07 58.9 50 62.0
Cc11_g04260 Coffea canephora HOM05D000403 ORTHO05D000350 1.8e-07 58.9 66 43.9
ATR0322G034 Amborella trichopoda HOM05D000403 ORTHO05D000350 2.4e-07 58.5 61 47.5
TWI32G0529 Tripterygium wilfordii HOM05D000403 ORTHO05D000350 2.4e-07 58.5 59 45.8
Peaxi162Scf00148g01211 Petunia axillaris HOM05D000403 ORTHO05D000350 3.1e-07 58.2 59 39.0
Cc06_g08540 Coffea canephora HOM05D000403 ORTHO05D000350 4.1e-07 57.8 66 42.4
DCAR_023783 Daucus carota HOM05D000403 ORTHO05D000350 4.1e-07 57.8 67 44.8
PSO170G3060 Papaver somniferum HOM05D000403 ORTHO05D000350 5.3e-07 57.4 64 45.3
Lsat_1_v5_gn_7_45300 Lactuca sativa HOM05D000403 ORTHO05D000350 6.9e-07 57.0 60 43.3
Aqoxy7G00658 Aquilegia oxysepala HOM05D000403 ORTHO05D000350 9.1e-07 56.6 63 42.9
Prupe.6G365900 Prunus persica HOM05D000403 ORTHO05D000350 9.1e-07 56.6 60 38.3
arahy.Tifrunner.gnm1.ann1.48E7F5 Arachis hypogaea HOM05D000403 ORTHO05D000350 1.2e-06 56.2 53 45.3
CiPaw.08G111000 Carya illinoinensis HOM05D000403 ORTHO05D000350 1.2e-06 56.2 60 41.7
Gohir.A13G017600 Gossypium hirsutum HOM05D000403 ORTHO05D000350 1.2e-06 56.2 61 41.0
Gohir.D13G018700 Gossypium hirsutum HOM05D000403 ORTHO05D000350 1.2e-06 56.2 61 41.0
Gorai.013G020700 Gossypium raimondii HOM05D000403 ORTHO05D000350 1.2e-06 56.2 61 41.0
PSO455G0085 Papaver somniferum HOM05D000403 ORTHO05D000350 1.2e-06 56.2 64 43.8
PSO832G0021 Papaver somniferum HOM05D000403 ORTHO05D000350 1.2e-06 56.2 53 41.5
Cpa.g.sc250.12 Carica papaya HOM05D000403 ORTHO05D000350 1.5e-06 55.8 58 44.8
CiPaw.08G111200 Carya illinoinensis HOM05D000403 ORTHO05D000350 1.5e-06 55.8 60 41.7
Cc00_g00740 Coffea canephora HOM05D000403 ORTHO05D000350 1.5e-06 55.8 68 44.1
Eucgr.B01450 Eucalyptus grandis HOM05D000403 ORTHO05D000350 1.5e-06 55.8 60 40.0
HanXRQChr01g0023781 Helianthus annuus HOM05D000403 ORTHO05D000350 1.5e-06 55.8 67 40.3
RcHm_v2.0_Chr2g0088561 Rosa chinensis HOM05D000403 ORTHO05D000350 1.5e-06 55.8 52 53.8
CDE02G3741 Ceratophyllum demersum HOM05D000403 ORTHO05D000350 2.0e-06 55.5 57 42.1
Lalb_Chr12g0210201 Lupinus albus HOM05D000403 ORTHO05D000350 2.0e-06 55.5 59 44.1
PSO170G5910 Papaver somniferum HOM05D000403 ORTHO05D000350 2.0e-06 55.5 64 45.3
PSO170G6583 Papaver somniferum HOM05D000403 ORTHO05D000350 2.0e-06 55.5 64 45.3
SGA_v2.0_scaffold83G26366 Striga asiatica HOM05D000403 ORTHO05D000350 2.0e-06 55.5 60 38.3
vmacro00716 Vaccinium macrocarpon HOM05D000403 ORTHO05D000350 2.0e-06 55.5 70 35.7
Medtr8g009820 Medicago truncatula HOM05D000403 ORTHO05D000350 2.6e-06 55.1 58 41.4
TAR365G1207 Trochodendron aralioides HOM05D000403 ORTHO05D000350 2.6e-06 55.1 59 40.7
ClCG06G010580 Citrullus lanatus HOM05D000403 ORTHO05D000350 3.4e-06 54.7 61 44.3
ClCG06G011060 Citrullus lanatus HOM05D000403 ORTHO05D000350 3.4e-06 54.7 64 46.9
FvH4_6g00020 Fragaria vesca HOM05D000403 ORTHO05D000350 3.4e-06 54.7 60 40.0
PSO210G1976 Papaver somniferum HOM05D000403 ORTHO05D000350 3.4e-06 54.7 53 41.5
MSTRG.346 Avicennia marina HOM05D000403 ORTHO05D000350 4.5e-06 54.3 58 39.7
Dinv24768 Davidia involucrata HOM05D000403 ORTHO05D000350 4.5e-06 54.3 58 39.7
Potri.017G004032 Populus trichocarpa HOM05D000403 ORTHO05D000350 4.5e-06 54.3 53 43.4
QL10p066234 Quercus lobata HOM05D000403 ORTHO05D000350 4.5e-06 54.3 69 36.2
Hund07389 Selenicereus undatus HOM05D000403 ORTHO05D000350 4.5e-06 54.3 58 41.4
Cc03_g15630 Coffea canephora HOM05D000403 ORTHO05D000350 5.9e-06 53.9 58 41.4
Cc03_g15660 Coffea canephora HOM05D000403 ORTHO05D000350 5.9e-06 53.9 58 41.4
MELO3C008767.2 Cucumis melo HOM05D000403 ORTHO05D000350 5.9e-06 53.9 61 37.7
Lalb_Chr07g0194841 Lupinus albus HOM05D000403 ORTHO05D000350 5.9e-06 53.9 58 41.4
MBI07_g32593_MAGBIO Magnolia biondii HOM05D000403 ORTHO05D000350 5.9e-06 53.9 64 35.9
Medtr8g007325 Medicago truncatula HOM05D000403 ORTHO05D000350 5.9e-06 53.9 58 41.4
Medtr8g009830 Medicago truncatula HOM05D000403 ORTHO05D000350 5.9e-06 53.9 53 47.2
Rhsim09G0004100 Rhododendron simsii HOM05D000403 ORTHO05D010388 5.9e-06 53.9 60 36.7
ClCG11G011050 Citrullus lanatus HOM05D000403 ORTHO05D000350 7.7e-06 53.5 61 37.7
MD02G1002600 Malus domestica HOM05D000403 ORTHO05D000350 7.7e-06 53.5 60 40.0
Phvul.010G039300 Phaseolus vulgaris HOM05D000403 ORTHO05D000350 7.7e-06 53.5 58 39.7
Potri.017G002950 Populus trichocarpa HOM05D000403 ORTHO05D000350 7.7e-06 53.5 53 43.4


User provided reference genes

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