Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb382940 Zea mays HOM05D001560 ORTHO05D004675 1.3e-37 159.1 74 100.0
Zm00001eb436070 Zea mays HOM05D001560 ORTHO05D004675 1.3e-37 159.1 74 100.0
Zm00001eb440310 Zea mays HOM05D001560 ORTHO05D004675 1.3e-37 159.1 74 100.0
Zm00001eb440380 Zea mays HOM05D001560 ORTHO05D004675 1.3e-37 159.1 74 100.0
Zm00001eb442180 Zea mays HOM05D001560 ORTHO05D004675 1.3e-37 159.1 74 100.0
CAN.G223.15 Capsicum annuum HOM05D001560 ORTHO05D004675 3.3e-36 154.5 74 97.3
CsaV3_UNG210330 Cucumis sativus L. HOM05D001560 ORTHO05D004675 3.3e-36 154.5 74 97.3
Gohir.A01G022400 Gossypium hirsutum HOM05D001560 ORTHO05D004675 3.3e-36 154.5 74 97.3
LjContig00439g0006307 Lotus japonicus HOM05D001560 ORTHO05D004675 3.3e-36 154.5 74 97.3
LjContig00446g0014136 Lotus japonicus HOM05D001560 ORTHO05D004675 3.3e-36 154.5 74 97.3
Lalb_Chr00c21g0406161 Lupinus albus HOM05D001560 ORTHO05D004675 3.3e-36 154.5 74 97.3
Lalb_Chr00c39g0409121 Lupinus albus HOM05D001560 ORTHO05D004675 3.3e-36 154.5 74 97.3
Lalb_Chr00c39g0409261 Lupinus albus HOM05D001560 ORTHO05D004675 3.3e-36 154.5 74 97.3
Lalb_Chr00c51g0413181 Lupinus albus HOM05D001560 ORTHO05D004675 3.3e-36 154.5 74 97.3
Peaxi162Scf01588g00002 Petunia axillaris HOM05D001560 ORTHO05D004675 3.3e-36 154.5 74 97.3
RcHm_v2.0_Chr6g0257991 Rosa chinensis HOM05D001560 ORTHO05D004675 3.3e-36 154.5 74 97.3
RcHm_v2.0_MTg0498881 Rosa chinensis HOM05D001560 ORTHO05D004675 3.3e-36 154.5 74 97.3
SalBow1G1852 Salvia bowleyana HOM05D001560 ORTHO05D004675 3.3e-36 154.5 74 97.3
Solyc00g019950.1 Solanum lycopersicum HOM05D001560 ORTHO05D004675 3.3e-36 154.5 74 97.3
Sopen00g002540 Solanum pennellii HOM05D001560 ORTHO05D004675 3.3e-36 154.5 74 97.3
arahy.Tifrunner.gnm1.ann1.11DKXG Arachis hypogaea HOM05D001560 ORTHO05D004675 7.3e-36 153.3 74 95.9
arahy.Tifrunner.gnm1.ann1.HAH5KR Arachis hypogaea HOM05D001560 ORTHO05D004675 7.3e-36 153.3 74 95.9
Sed0020323 Sechium edule HOM05D001560 ORTHO05D004675 7.3e-36 153.3 74 95.9
SGA_v2.0_scaffold245G44645 Striga asiatica HOM05D001560 ORTHO05D004675 7.3e-36 153.3 74 95.9
CANSAT16G0009 Cannabis sativa HOM05D001560 ORTHO05D004675 1.2e-35 152.5 74 95.9
CAN.G134.23 Capsicum annuum HOM05D001560 ORTHO05D004675 1.2e-35 152.5 74 95.9
Migut.D01524 Erythranthe guttata HOM05D001560 ORTHO05D004675 1.2e-35 152.5 74 95.9
Gohir.A03G134200 Gossypium hirsutum HOM05D001560 ORTHO05D004675 1.2e-35 152.5 74 95.9
Aa31csc239G40 Aethionema arabicum HOM05D001560 ORTHO05D004675 1.6e-35 152.1 74 95.9
BcaC09g49590 Brassica carinata HOM05D001560 ORTHO05D004675 1.6e-35 152.1 74 95.9
BolSC28t60362H Brassica oleracea HOM05D001560 ORTHO05D004675 1.6e-35 152.1 74 95.9
BraSC48t46349Z Brassica rapa HOM05D001560 ORTHO05D004675 1.6e-35 152.1 74 95.9
CARHR287160 Cardamine hirsuta HOM05D001560 ORTHO05D004675 1.6e-35 152.1 74 95.9
Thhalv10022839m.g Eutrema salsugineum HOM05D001560 ORTHO05D004675 1.6e-35 152.1 74 95.9
RhsimMtG0004600 Rhododendron simsii HOM05D001560 ORTHO05D004675 1.6e-35 152.1 74 95.9
RhsimMtG0006100 Rhododendron simsii HOM05D001560 ORTHO05D004675 1.6e-35 152.1 74 95.9
Sp3g25870 Schrenkiella parvula HOM05D001560 ORTHO05D004675 1.6e-35 152.1 74 95.9
MBI05_g23323_MAGBIO Magnolia biondii HOM05D001560 ORTHO05D004675 2.1e-35 151.8 74 95.9
Nn1g10115 Nelumbo nucifera HOM05D001560 ORTHO05D004675 2.1e-35 151.8 74 95.9
Actinidia34872 Actinidia chinensis HOM05D001560 ORTHO05D004675 2.8e-35 151.4 74 95.9
Dinv29327 Davidia involucrata HOM05D001560 ORTHO05D004675 2.8e-35 151.4 74 95.9
HanXRQChr00c0055g0571471 Helianthus annuus HOM05D001560 ORTHO05D004675 2.8e-35 151.4 74 95.9
HanXRQChr12g0358671 Helianthus annuus HOM05D001560 ORTHO05D004675 2.8e-35 151.4 74 95.9
HanXRQMTg0579651 Helianthus annuus HOM05D001560 ORTHO05D004675 2.8e-35 151.4 74 95.9
Lj2P1224T99 Lonicera japonica HOM05D001560 ORTHO05D004675 2.8e-35 151.4 74 95.9
Lj2P1227T100 Lonicera japonica HOM05D001560 ORTHO05D004675 2.8e-35 151.4 74 95.9
unitig_87.g28016 Utricularia gibba HOM05D001560 ORTHO05D004675 2.8e-35 151.4 74 95.9
ATMG00070 Arabidopsis thaliana HOM05D001560 ORTHO05D004675 3.6e-35 151.0 74 94.6
CARHR282620 Cardamine hirsuta HOM05D001560 ORTHO05D004675 3.6e-35 151.0 74 94.6
CDE02G0735 Ceratophyllum demersum HOM05D001560 ORTHO05D004675 4.7e-35 150.6 72 97.2
CDE02G2746 Ceratophyllum demersum HOM05D001560 ORTHO05D004675 4.7e-35 150.6 72 97.2
SabraMtG0007900 Salix brachista HOM05D001560 ORTHO05D004675 8.1e-35 149.8 74 94.6
HanXRQChr02g0035261 Helianthus annuus HOM05D001560 ORTHO05D004675 1.1e-34 149.4 74 94.6
arahy.Tifrunner.gnm1.ann1.E4X7TI Arachis hypogaea HOM05D001560 ORTHO05D004675 1.4e-34 149.1 72 95.8
ECA039G0015 Erigeron canadensis HOM05D001560 ORTHO05D004675 1.4e-34 149.1 74 94.6
ECA039G0026 Erigeron canadensis HOM05D001560 ORTHO05D004675 1.4e-34 149.1 74 94.6
ECA041G0003 Erigeron canadensis HOM05D001560 ORTHO05D004675 1.4e-34 149.1 74 94.6
ECA238G3729 Erigeron canadensis HOM05D001560 ORTHO05D004675 1.4e-34 149.1 74 94.6
C01p34750 Brassica napus HOM05D001560 ORTHO05D004675 2.4e-34 148.3 74 94.6
BolC1t03442H Brassica oleracea HOM05D001560 ORTHO05D004675 2.4e-34 148.3 74 94.6
DCAR_031657 Daucus carota HOM05D001560 ORTHO05D004675 2.4e-34 148.3 72 95.8
DCAR_032439 Daucus carota HOM05D001560 ORTHO05D004675 2.4e-34 148.3 72 95.8
Ah.02g118870 Amaranthus hybridus HOM05D001560 ORTHO05D004675 3.1e-34 147.9 71 95.8
Ah.08g210720 Amaranthus hybridus HOM05D001560 ORTHO05D004675 3.1e-34 147.9 71 95.8
Ah.10g027950 Amaranthus hybridus HOM05D001560 ORTHO05D004675 3.1e-34 147.9 71 95.8
AUR62042344 Chenopodium quinoa HOM05D001560 ORTHO05D004675 3.1e-34 147.9 71 95.8
Potri.013G066660 Populus trichocarpa HOM05D001560 ORTHO05D004675 4.0e-34 147.5 74 93.2
Thhalv10002997m.g Eutrema salsugineum HOM05D001560 ORTHO05D004675 8.9e-34 146.4 74 93.2
CsaV3_5G015950 Cucumis sativus L. HOM05D001560 ORTHO05D004675 1.2e-33 146.0 74 93.2
Ca_22175_v3 Cicer arietinum L. HOM05D001560 ORTHO05D004675 1.5e-33 145.6 69 97.1
DCAR_032222 Daucus carota HOM05D001560 ORTHO05D004675 1.5e-33 145.6 72 94.4
Medtr0212s0080 Medicago truncatula HOM05D001560 ORTHO05D004675 1.5e-33 145.6 69 97.1
Psat7g198960 Pisum sativum HOM05D001560 ORTHO05D004675 1.5e-33 145.6 69 97.1
TPR.G40193 Trifolium pratense HOM05D001560 ORTHO05D004675 1.5e-33 145.6 69 97.1
BcaC09g49591 Brassica carinata HOM05D001560 ORTHO05D004675 2.6e-33 144.8 71 94.4
Cpa.g.sc38.8 Carica papaya HOM05D001560 ORTHO05D004675 9.9e-33 142.9 74 89.2
Dinv06677 Davidia involucrata HOM05D001560 ORTHO05D004675 9.9e-33 142.9 70 94.3
SHI54579 Sapria himalayana HOM05D001560 ORTHO05D004675 1.7e-32 142.1 74 90.5
BolSC28t60305H Brassica oleracea HOM05D001560 ORTHO05D004675 2.9e-32 141.4 68 95.6
Nitab4.5_0013170g0020 Nicotiana tabacum HOM05D001560 ORTHO05D004675 8.4e-32 139.8 72 90.3
SHI42286 Sapria himalayana HOM05D000743 ORTHO05D004675 1.1e-31 139.4 74 89.2
SHI51143 Sapria himalayana HOM05D001560 ORTHO05D004675 1.1e-31 139.4 74 89.2
SHI37161 Sapria himalayana HOM05D000743 ORTHO05D000580 1.9e-31 138.7 74 87.8
SHI36081 Sapria himalayana HOM05D001560 ORTHO05D004675 5.4e-31 137.1 74 86.5
SHI36380 Sapria himalayana HOM05D001560 ORTHO05D004675 5.4e-31 137.1 74 87.8
SHI33931 Sapria himalayana HOM05D001560 ORTHO05D004675 7.1e-31 136.7 71 90.1
SHI49196 Sapria himalayana HOM05D001560 ORTHO05D004675 7.1e-31 136.7 71 90.1
SHI36375 Sapria himalayana HOM05D001560 ORTHO05D004675 1.2e-30 136.0 74 86.5
Nitab4.5_0001127g0220 Nicotiana tabacum HOM05D001560 ORTHO05D004675 1.6e-30 135.6 74 85.1
SHI38033 Sapria himalayana HOM05D001560 ORTHO05D004675 2.7e-30 134.8 74 86.5
SHI39123 Sapria himalayana HOM05D001560 ORTHO05D004675 2.7e-30 134.8 74 86.5
SHI40902 Sapria himalayana HOM05D001560 ORTHO05D004675 3.5e-30 134.4 74 85.1
SHI45393 Sapria himalayana HOM05D001560 ORTHO05D004675 6.0e-30 133.7 74 86.5
SHI36627 Sapria himalayana HOM05D001560 ORTHO05D004675 7.8e-30 133.3 70 88.6
SHI35320 Sapria himalayana HOM05D001560 ORTHO05D004675 1.3e-29 132.5 74 85.1
SHI36971 Sapria himalayana HOM05D001560 ORTHO05D004675 2.3e-29 131.7 74 83.8
SHI43258 Sapria himalayana HOM05D001560 ORTHO05D004675 2.3e-29 131.7 74 83.8
SHI36939 Sapria himalayana HOM05D001560 ORTHO05D004675 3.0e-29 131.3 72 86.1
SHI37164 Sapria himalayana HOM05D001560 ORTHO05D003613 3.0e-29 131.3 71 85.9
SHI47572 Sapria himalayana HOM05D001560 ORTHO05D004675 3.0e-29 131.3 71 85.9
SHI36583 Sapria himalayana HOM05D001560 ORTHO05D004675 3.9e-29 131.0 74 83.8
SHI43451 Sapria himalayana HOM05D001560 ORTHO05D004675 6.6e-29 130.2 74 83.8
SHI53856 Sapria himalayana HOM05D001560 ORTHO05D004675 8.7e-29 129.8 74 85.1
PGSC0003DMG400018984 Solanum tuberosum HOM05D001560 ORTHO05D004675 8.7e-29 129.8 74 83.8
Ah.10g028660 Amaranthus hybridus HOM05D001560 ORTHO05D004675 1.5e-28 129.0 62 96.8
SHI34635 Sapria himalayana HOM05D001560 ORTHO05D004675 1.5e-28 129.0 72 84.7
SHI36016 Sapria himalayana HOM05D001560 ORTHO05D004675 1.9e-28 128.6 74 82.4
SHI36775 Sapria himalayana HOM05D001560 ORTHO05D004675 1.9e-28 128.6 74 83.8
SHI36786 Sapria himalayana HOM05D001560 ORTHO05D004675 1.9e-28 128.6 74 83.8
SHI37085 Sapria himalayana HOM05D001560 ORTHO05D004675 3.3e-28 127.9 68 86.8
SHI48979 Sapria himalayana HOM05D001560 ORTHO05D004675 7.3e-28 126.7 71 83.1
SHI38213 Sapria himalayana HOM05D001560 ORTHO05D004675 1.3e-27 125.9 74 82.4
Nitab4.5_0001152g0390 Nicotiana tabacum HOM05D001560 ORTHO05D004675 2.8e-27 124.8 67 85.1
SHI26652 Sapria himalayana HOM05D001560 ORTHO05D004675 2.8e-27 124.8 69 84.1
SHI34631 Sapria himalayana HOM05D001560 ORTHO05D004675 2.8e-27 124.8 74 82.4
SHI36139 Sapria himalayana HOM05D001560 ORTHO05D004675 3.6e-27 124.4 68 86.8
SHI35231 Sapria himalayana HOM05D001560 ORTHO05D004675 6.2e-27 123.6 71 81.7
SHI27346 Sapria himalayana HOM05D001560 ORTHO05D004675 8.1e-27 123.2 71 83.1
SHI38099 Sapria himalayana HOM05D001560 ORTHO05D004675 3.1e-26 121.3 74 81.1
SHI39097 Sapria himalayana HOM05D001560 ORTHO05D004675 1.2e-25 119.4 70 81.4
Manes.01G049495 Manihot esculenta HOM05D001560 ORTHO05D004675 4.4e-25 117.5 59 93.2
SHI37162 Sapria himalayana HOM05D001560 ORTHO05D004675 5.8e-25 117.1 69 81.2
SHI42241 Sapria himalayana HOM05D001560 ORTHO05D004675 5.8e-25 117.1 74 78.4
SHI53284 Sapria himalayana HOM05D001560 ORTHO05D004675 9.9e-25 116.3 72 80.6
Cre07.g327400 Chlamydomonas reinhardtii HOM05D001560 ORTHO05D004675 2.2e-24 115.2 68 76.5
HanXRQChr10g0297171 Helianthus annuus HOM05D001560 ORTHO05D004675 3.8e-24 114.4 56 94.6
Nitab4.5_0000661g0100 Nicotiana tabacum HOM05D001560 ORTHO05D004675 8.4e-24 113.2 64 82.8
Haze_26224 Corylus avellana HOM05D001560 ORTHO05D004675 1.0e-21 106.3 69 69.6
Lsat_1_v5_gn_1_23980 Lactuca sativa HOM05D001560 ORTHO05D004675 3.3e-20 101.3 57 84.2
SHI37068 Sapria himalayana HOM05D001560 ORTHO05D004675 2.1e-19 98.6 52 88.5
Gorai.001G166700 Gossypium raimondii HOM05D007877 ORTHO05D009957 3.6e-19 97.8 48 93.8
CsaV3_5G015880 Cucumis sativus L. HOM05D001560 ORTHO05D004675 2.4e-18 95.1 49 87.8
Hma1.2p1_1099F.1_g256790 Hydrangea macrophylla HOM05D001560 ORTHO05D004675 1.2e-17 92.8 48 89.6
SHI51556 Sapria himalayana HOM05D001560 ORTHO05D004675 2.6e-17 91.7 49 85.7
SHI35323 Sapria himalayana HOM05D001560 ORTHO05D004675 5.8e-17 90.5 58 75.9
SHI44216 Sapria himalayana HOM05D001560 ORTHO05D004675 3.8e-16 87.8 69 65.2
Nitab4.5_0019346g0010 Nicotiana tabacum HOM05D001560 ORTHO05D004675 1.1e-15 86.3 43 93.0
SHI52730 Sapria himalayana HOM05D001560 ORTHO05D004675 1.9e-15 85.5 45 88.9
SHI46062 Sapria himalayana HOM05D001560 ORTHO05D004675 2.4e-15 85.1 47 85.1
SMO053G0006 Selaginella moellendorffii HOM05D001560 ORTHO05D004675 9.3e-15 83.2 71 53.5
Os12g0422971 Oryza sativa ssp. japonica HOM05D001560 ORTHO05D004675 2.7e-14 81.6 39 94.9
SHI40934 Sapria himalayana HOM05D001560 ORTHO05D004675 3.0e-13 78.2 48 79.2
Nitab4.5_0001152g0580 Nicotiana tabacum HOM05D001560 ORTHO05D004675 3.9e-13 77.8 45 80.0
SHI35188 Sapria himalayana HOM05D001560 ORTHO05D004675 2.1e-11 72.0 35 91.4
SHI50434 Sapria himalayana HOM05D001560 ORTHO05D004675 2.8e-11 71.6 37 86.5
SHI33107 Sapria himalayana HOM05D001560 ORTHO05D004675 1.1e-10 69.7 50 70.0
SHI35332 Sapria himalayana HOM05D001560 ORTHO05D004675 1.4e-10 69.3 34 91.2
EL10Ac7g17432 Beta vulgaris HOM05D001560 ORTHO05D004675 9.0e-10 66.6 35 85.7
Nitab4.5_0001152g0360 Nicotiana tabacum HOM05D001560 ORTHO05D004675 7.6e-09 63.5 31 90.3
SHI35288 Sapria himalayana HOM05D001560 ORTHO05D004675 1.0e-08 63.2 67 52.2
SHI35482 Sapria himalayana HOM05D001560 ORTHO05D003613 1.3e-08 62.8 39 76.9
SHI49835 Sapria himalayana HOM05D001560 ORTHO05D004675 1.7e-08 62.4 35 82.9
SHI50380 Sapria himalayana HOM05D001560 ORTHO05D004675 1.7e-08 62.4 35 82.9
SHI36269 Sapria himalayana HOM05D001560 ORTHO05D004675 9.3e-07 56.6 29 86.2
SHI38481 Sapria himalayana HOM05D001560 ORTHO05D004675 3.5e-06 54.7 37 70.3


User provided reference genes

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