Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb434510 Zea mays HOM05D005286 ORTHO05D006348 3.8e-304 1047.3 529 100.0
ATR0138G018 Amborella trichopoda HOM05D005286 ORTHO05D006348 2.8e-153 546.2 463 62.0
HPP92_011629 Vanilla planifolia HOM05D005286 ORTHO05D006348 5.2e-152 542.0 482 58.1
PSO170G0528 Papaver somniferum HOM05D005286 ORTHO05D006348 3.4e-151 539.3 438 63.0
Aqoxy5G02419 Aquilegia oxysepala HOM05D005286 ORTHO05D006348 9.2e-149 531.2 479 59.3
Sc09g0002230 Simmondsia chinensis HOM05D005286 ORTHO05D006348 2.5e-146 523.1 472 58.3
Migut.H00797 Erythranthe guttata HOM05D005286 ORTHO05D006348 9.5e-146 521.2 470 58.3
Ah.06g191030 Amaranthus hybridus HOM05D005286 ORTHO05D006348 1.2e-145 520.8 478 57.9
PGR119G0364 Punica granatum HOM05D005286 ORTHO05D006348 1.6e-145 520.4 471 56.5
ECA248G0233 Erigeron canadensis HOM05D005286 ORTHO05D006348 6.2e-145 518.5 470 57.0
Prupe.4G274700 Prunus persica HOM05D005286 ORTHO05D006348 8.1e-145 518.1 487 56.1
SGA_v2.0_scaffold189G40378 Striga asiatica HOM05D005286 ORTHO05D006348 1.1e-144 517.7 495 56.4
Lsat_1_v5_gn_1_78000 Lactuca sativa HOM05D005286 ORTHO05D006348 2.4e-144 516.5 467 57.6
Hund21799 Selenicereus undatus HOM05D005286 ORTHO05D006348 2.4e-144 516.5 470 56.4
GSVIVG01022340001 Vitis vinifera HOM05D005286 ORTHO05D006348 3.1e-144 516.2 497 56.9
Solyc12g088020.1 Solanum lycopersicum HOM05D005286 ORTHO05D006348 5.2e-144 515.4 498 54.6
MSTRG.23499 Avicennia marina HOM05D005286 ORTHO05D006348 6.8e-144 515.0 509 55.6
Cfa021278 Carpinus fangiana HOM05D005286 ORTHO05D006348 6.8e-144 515.0 468 59.0
Nn1g08960 Nelumbo nucifera HOM05D005286 ORTHO05D006348 6.8e-144 515.0 478 56.3
TAR625G0087 Trochodendron aralioides HOM05D005286 ORTHO05D006348 6.8e-144 515.0 508 55.5
Sopen12g030050 Solanum pennellii HOM05D005286 ORTHO05D006348 8.9e-144 514.6 498 54.8
Actinidia16523 Actinidia chinensis HOM05D005286 ORTHO05D006348 1.2e-143 514.2 468 57.5
HanXRQChr01g0017141 Helianthus annuus HOM05D005286 ORTHO05D006348 1.2e-143 514.2 449 59.0
QL10p041275 Quercus lobata HOM05D005286 ORTHO05D006348 1.2e-143 514.2 445 59.8
ClCG04G002290 Citrullus lanatus HOM05D005286 ORTHO05D006348 1.5e-143 513.8 500 54.4
Lj4A421T8 Lonicera japonica HOM05D005286 ORTHO05D006348 1.5e-143 513.8 471 57.1
TWI75G1712 Tripterygium wilfordii HOM05D005286 ORTHO05D006348 2.6e-143 513.1 474 57.4
Ciclev10000962m.g Citrus clementina HOM05D005286 ORTHO05D006348 4.4e-143 512.3 470 56.4
CSS0034769 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 5.8e-143 511.9 444 60.1
RcHm_v2.0_Chr2g0122521 Rosa chinensis HOM05D005286 ORTHO05D006348 5.8e-143 511.9 469 55.7
EL10Ac4g09623 Beta vulgaris HOM05D005286 ORTHO05D006348 7.6e-143 511.5 510 54.1
Rhsim08G0000400 Rhododendron simsii HOM05D005286 ORTHO05D006348 9.9e-143 511.1 470 56.6
MD15G1135000 Malus domestica HOM05D005286 ORTHO05D006348 1.3e-142 510.8 471 56.9
CSS0004303 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 1.7e-142 510.4 444 60.1
MELO3C008897.2 Cucumis melo HOM05D005286 ORTHO05D006348 2.2e-142 510.0 443 58.0
Oeu037874.1 Olea europaea HOM05D005286 ORTHO05D006348 3.8e-142 509.2 470 57.4
FAN28G1250 Fragaria x ananassa HOM05D005286 ORTHO05D006348 4.9e-142 508.8 473 56.7
Atru.chr4.988 Acer truncatum HOM05D005286 ORTHO05D006348 8.4e-142 508.1 494 54.7
CiPaw.03G118000 Carya illinoinensis HOM05D005286 ORTHO05D006348 8.4e-142 508.1 512 54.9
Glyma.06G155750 Glycine max HOM05D005286 ORTHO05D006348 8.4e-142 508.1 506 54.0
Lalb_Chr23g0272691 Lupinus albus HOM05D005286 ORTHO05D006348 1.1e-141 507.7 500 54.2
Sed0025698 Sechium edule HOM05D005286 ORTHO05D006348 1.1e-141 507.7 475 54.9
vmacro18685 Vaccinium macrocarpon HOM05D005286 ORTHO05D006348 1.1e-141 507.7 475 56.0
FvH4_1g24860 Fragaria vesca HOM05D005286 ORTHO05D006348 1.4e-141 507.3 475 55.6
FAN23G2334 Fragaria x ananassa HOM05D005286 ORTHO05D006348 1.4e-141 507.3 475 56.0
FAN19G2916 Fragaria x ananassa HOM05D005286 ORTHO05D006348 1.9e-141 506.9 473 55.8
arahy.Tifrunner.gnm1.ann1.7K8RK5 Arachis hypogaea HOM05D005286 ORTHO05D006348 5.4e-141 505.4 455 58.7
arahy.Tifrunner.gnm1.ann1.ZN9YLD Arachis hypogaea HOM05D005286 ORTHO05D006348 9.2e-141 504.6 455 58.5
Potri.007G101600 Populus trichocarpa HOM05D005286 ORTHO05D006348 9.2e-141 504.6 478 55.6
TPR.G33580 Trifolium pratense HOM05D005286 ORTHO05D006348 9.2e-141 504.6 474 57.2
Sabra07G0083800 Salix brachista HOM05D005286 ORTHO05D006348 1.6e-140 503.8 477 56.0
CAN.G1104.7 Capsicum annuum HOM05D005286 ORTHO05D006348 2.1e-140 503.4 497 53.5
Thecc.01G137300 Theobroma cacao HOM05D005286 ORTHO05D006348 2.1e-140 503.4 472 56.4
FAN26G1990 Fragaria x ananassa HOM05D005286 ORTHO05D006348 3.5e-140 502.7 475 55.6
Gohir.A12G085400 Gossypium hirsutum HOM05D005286 ORTHO05D006348 4.6e-140 502.3 448 57.8
CsaV3_4G030380 Cucumis sativus L. HOM05D005286 ORTHO05D006348 1.0e-139 501.1 443 57.6
PGSC0003DMG400045338 Solanum tuberosum HOM05D005286 ORTHO05D006348 1.0e-139 501.1 470 54.9
Lj1g0003788 Lotus japonicus HOM05D003519 ORTHO05D004443 1.3e-139 500.7 502 54.6
MBI06_g35210_MAGBIO Magnolia biondii HOM05D005286 ORTHO05D006348 1.3e-139 500.7 562 50.2
VMungo1309G1016 Vigna mungo HOM05D005286 ORTHO05D006348 2.3e-139 500.0 478 55.2
Manes.12G159000 Manihot esculenta HOM05D005286 ORTHO05D006348 3.0e-139 499.6 519 51.8
Gohir.D12G083400 Gossypium hirsutum HOM05D005286 ORTHO05D006348 5.1e-139 498.8 454 57.0
A06p30530 Brassica napus HOM05D005286 ORTHO05D006348 6.6e-139 498.4 446 57.4
BraA06t26002Z Brassica rapa HOM05D005286 ORTHO05D006348 6.6e-139 498.4 446 57.4
Duzib147G1331 Durio zibethinus HOM05D005286 ORTHO05D006348 6.6e-139 498.4 484 54.5
Peaxi162Scf00151g00811 Petunia axillaris HOM05D005286 ORTHO05D006348 8.7e-139 498.0 491 53.0
THA.LOC104819345 Tarenaya hassleriana HOM05D005286 ORTHO05D006348 1.5e-138 497.3 469 54.6
Phvul.009G154600 Phaseolus vulgaris HOM05D005286 ORTHO05D006348 3.3e-138 496.1 475 55.2
BcaC01g02644 Brassica carinata HOM05D005286 ORTHO05D006348 2.1e-137 493.4 456 55.5
Ca_16981_v3 Cicer arietinum L. HOM05D005286 ORTHO05D006348 2.1e-137 493.4 462 56.5
CARHR277830 Cardamine hirsuta HOM05D005286 ORTHO05D006348 2.8e-137 493.0 480 53.8
Gorai.008G094500 Gossypium raimondii HOM05D005286 ORTHO05D006348 2.8e-137 493.0 468 55.8
BcaB02g09762 Brassica carinata HOM05D005286 ORTHO05D006348 4.7e-137 492.3 482 54.1
C03p62500 Brassica napus HOM05D005286 ORTHO05D006348 6.2e-137 491.9 444 56.8
BolC3t18507H Brassica oleracea HOM05D005286 ORTHO05D006348 6.2e-137 491.9 444 56.8
Sp2g26980 Schrenkiella parvula HOM05D005286 ORTHO05D006348 8.1e-137 491.5 446 56.3
CANSAT35G0194 Cannabis sativa HOM05D005286 ORTHO05D006348 1.4e-136 490.7 446 56.3
AL8G41150 Arabidopsis lyrata HOM05D005286 ORTHO05D006348 2.4e-136 490.0 444 56.5
Duzib187G0999 Durio zibethinus HOM05D005286 ORTHO05D006348 4.0e-136 489.2 486 54.7
Potri.007G101700 Populus trichocarpa HOM05D005286 ORTHO05D006348 4.0e-136 489.2 475 54.3
Cc07_g21020 Coffea canephora HOM05D005286 ORTHO05D006348 6.9e-136 488.4 471 55.2
AT5G63910 Arabidopsis thaliana HOM05D005286 ORTHO05D006348 1.5e-135 487.3 444 56.3
Medtr3g096675 Medicago truncatula HOM05D005286 ORTHO05D006348 1.5e-135 487.3 471 55.2
Aa31LG1G17980 Aethionema arabicum HOM05D005286 ORTHO05D006348 4.4e-135 485.7 449 56.6
Carub.0008s2471 Capsella rubella HOM05D005286 ORTHO05D006348 5.8e-135 485.3 446 55.4
AUR62000514 Chenopodium quinoa HOM05D005286 ORTHO05D006348 5.8e-135 485.3 405 61.5
AUR62006858 Chenopodium quinoa HOM05D005286 ORTHO05D006348 1.7e-134 483.8 401 61.8
Nitab4.5_0000954g0020 Nicotiana tabacum HOM05D005286 ORTHO05D006348 2.2e-134 483.4 459 55.1
Hma1.2p1_3117F.1_g332810 Hydrangea macrophylla HOM05D005286 ORTHO05D006348 2.9e-134 483.0 488 53.9
THA.LOC104818420 Tarenaya hassleriana HOM05D005286 ORTHO05D006348 3.2e-133 479.6 533 49.5
CSS0028284 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 2.5e-130 469.9 401 60.1
Eucgr.I00123 Eucalyptus grandis HOM05D005286 ORTHO05D006348 3.8e-126 456.1 512 50.0
Thhalv10004131m.g Eutrema salsugineum HOM05D005286 ORTHO05D006348 4.6e-124 449.1 479 52.4
SMO119G0327 Selaginella moellendorffii HOM05D005286 ORTHO05D006348 2.0e-119 433.7 472 50.4
Nn5g28436 Nelumbo nucifera HOM05D005286 ORTHO05D006348 1.1e-117 427.9 488 49.2
Mapoly0032s0088 Marchantia polymorpha HOM05D005286 ORTHO05D006348 1.4e-117 427.6 457 51.6
Sabra07G0083900 Salix brachista HOM05D005286 ORTHO05D006348 5.5e-117 425.6 375 57.9
Hund07236 Selenicereus undatus HOM05D005286 ORTHO05D006348 1.6e-113 414.1 413 53.0
CSS0025452 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 2.1e-113 413.7 462 50.2
COL.COLO4_35813 Corchorus olitorius HOM05D005286 ORTHO05D006348 1.0e-110 404.8 472 49.6
Nitab4.5_0000432g0040 Nicotiana tabacum HOM05D005286 ORTHO05D006348 8.7e-107 391.7 465 48.2
Gohir.D12G083401 Gossypium hirsutum HOM05D005286 ORTHO05D006348 7.4e-106 388.7 377 54.4
DCAR_019994 Daucus carota HOM05D005286 ORTHO05D006348 6.1e-100 369.0 473 46.7
Psat5g059680 Pisum sativum HOM05D005286 ORTHO05D006348 2.6e-95 353.6 352 54.3
QL10p041264 Quercus lobata HOM05D005286 ORTHO05D006348 3.7e-89 333.2 242 65.7
AagrBONN_evm.TU.Sc2ySwM_362.2029 Anthoceros agrestis HOM05D005286 ORTHO05D006348 2.0e-87 327.4 339 51.6
Hma1.2p1_0310F.1_g121020 Hydrangea macrophylla HOM05D005286 ORTHO05D006348 1.1e-85 321.6 237 66.7
Pp3c3_10560 Physcomitrium patens HOM05D005286 ORTHO05D006348 2.2e-81 307.4 335 50.4
SEGI_22884 Sequoiadendron giganteum HOM05D005286 ORTHO05D006348 4.8e-81 306.2 244 63.1
SEGI_35897 Sequoiadendron giganteum HOM05D005286 ORTHO05D006348 4.8e-81 306.2 244 63.1
CBR_g8546 Chara braunii HOM05D005286 ORTHO05D006348 1.4e-75 288.1 305 49.8
Dinv24561 Davidia involucrata HOM05D005286 ORTHO05D006348 1.3e-73 281.6 201 68.2
Dinv15529 Davidia involucrata HOM05D005286 ORTHO05D006348 3.7e-73 280.0 202 67.3
Cpa.g.sc37.7 Carica papaya HOM05D005286 ORTHO05D006348 2.7e-71 273.9 242 59.1
Haze_10873 Corylus avellana HOM05D005286 ORTHO05D006348 8.5e-70 268.9 291 54.3
DCAR_000205 Daucus carota HOM05D005286 ORTHO05D006348 7.7e-63 245.7 186 64.5
unitig_748.g8002 Utricularia gibba HOM05D005286 ORTHO05D006348 8.6e-62 242.3 176 64.2
Oeu039334.1 Olea europaea HOM05D005286 ORTHO05D006348 1.0e-59 235.3 180 65.0
CDE08G1426 Ceratophyllum demersum HOM05D005286 ORTHO05D006348 1.3e-57 228.4 247 49.4
Os04g0692800 Oryza sativa ssp. japonica HOM05D005286 ORTHO05D006348 1.1e-56 225.3 140 78.6
unitig_748.g8003 Utricularia gibba HOM05D005286 ORTHO05D006348 2.4e-56 224.2 267 49.4
CDE08G1664 Ceratophyllum demersum HOM05D005286 ORTHO05D006348 3.7e-49 200.3 168 61.9
CSS0038762 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 5.6e-45 186.4 213 49.8
CSS0007937 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 7.5e-42 176.0 218 46.3
CBR_g864 Chara braunii HOM05D005286 ORTHO05D006348 9.8e-42 175.6 506 27.5
Dinv24565 Davidia involucrata HOM05D005286 ORTHO05D006348 9.8e-42 175.6 229 44.5
QL10p041267 Quercus lobata HOM05D005286 ORTHO05D006348 9.8e-42 175.6 213 46.9
RcHm_v2.0_Chr6g0261231 Rosa chinensis HOM05D005286 ORTHO05D006348 6.8e-35 152.9 174 47.1
PRCOL_00003919 Prasinoderma coloniale HOM05D005286 ORTHO05D006348 3.4e-34 150.6 485 29.9
Cpa.g.sc37.6 Carica papaya HOM05D005286 ORTHO05D006348 9.9e-34 149.1 163 50.3
SEGI_37681 Sequoiadendron giganteum HOM05D005286 ORTHO05D006348 2.8e-28 131.0 137 51.8
Nitab4.5_0004530g0050 Nicotiana tabacum HOM05D005286 ORTHO05D006348 3.0e-22 110.9 165 40.0
Cfa022134 Carpinus fangiana HOM05D005286 ORTHO05D006348 1.2e-15 89.0 258 30.2
Glyma.04G210301 Glycine max HOM05D005286 ORTHO05D006348 6.0e-15 86.7 54 74.1
Nitab4.5_0008592g0010 Nicotiana tabacum HOM05D005286 ORTHO05D006348 1.0e-14 85.9 98 45.9
CBR_g8549 Chara braunii HOM05D005286 ORTHO05D006348 3.3e-13 80.9 147 38.8
CSS0025385 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 6.9e-11 73.2 173 32.4
Cre10.g425200 Chlamydomonas reinhardtii HOM05D005286 ORTHO05D006348 1.7e-09 68.6 165 34.5
Hma1.2p1_0310F.1_g121040 Hydrangea macrophylla HOM05D005286 ORTHO05D006348 6.4e-09 66.6 61 55.7
Nitab4.5_0008217g0010 Nicotiana tabacum HOM05D005286 ORTHO05D006348 4.2e-08 63.9 102 34.3
SalBow2G0549 Salvia bowleyana HOM05D002652 ORTHO05D002739 3.5e-07 60.8 73 49.3
Nitab4.5_0002142g0070 Nicotiana tabacum HOM05D005286 ORTHO05D006348 1.8e-06 58.5 78 41.0


User provided reference genes

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