Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb433610 Zea mays HOM05D005347 ORTHO05D007838 0.0e+00 2727.6 1380 100.0
Glyma.10G097800 Glycine max HOM05D005347 ORTHO05D007838 0.0e+00 2397.1 1386 86.1
Phvul.007G252700 Phaseolus vulgaris HOM05D005347 ORTHO05D007838 0.0e+00 2389.0 1387 85.9
VMungo1383G0107 Vigna mungo HOM05D005347 ORTHO05D007838 0.0e+00 2383.2 1390 85.3
arahy.Tifrunner.gnm1.ann1.RSU8B2 Arachis hypogaea HOM05D005347 ORTHO05D007838 0.0e+00 2379.4 1389 85.2
Glyma.19G139300 Glycine max HOM05D005347 ORTHO05D007838 0.0e+00 2379.4 1385 85.5
Manes.08G050600 Manihot esculenta HOM05D005347 ORTHO05D007838 0.0e+00 2377.1 1384 86.0
arahy.Tifrunner.gnm1.ann1.XR90DA Arachis hypogaea HOM05D005347 ORTHO05D007838 0.0e+00 2375.5 1389 85.2
Nn7g36281 Nelumbo nucifera HOM05D005347 ORTHO05D007838 0.0e+00 2374.7 1385 85.8
Cfa016819 Carpinus fangiana HOM05D005347 ORTHO05D007838 0.0e+00 2374.0 1384 85.7
Gorai.006G136500 Gossypium raimondii HOM05D005347 ORTHO05D007838 0.0e+00 2372.0 1385 85.8
Duzib093G0142 Durio zibethinus HOM05D005347 ORTHO05D007838 0.0e+00 2371.3 1385 85.8
ClCG04G000090 Citrullus lanatus HOM05D005347 ORTHO05D007838 0.0e+00 2368.6 1384 85.7
Cc06_g17100 Coffea canephora HOM05D005347 ORTHO05D007838 0.0e+00 2368.2 1406 84.7
Gohir.A09G122100 Gossypium hirsutum HOM05D005347 ORTHO05D007838 0.0e+00 2367.8 1385 85.6
MELO3C023131.2 Cucumis melo HOM05D005347 ORTHO05D007838 0.0e+00 2367.4 1384 85.8
Glyma.03G137000 Glycine max HOM05D005347 ORTHO05D007838 0.0e+00 2365.9 1386 84.6
Eucgr.A02348 Eucalyptus grandis HOM05D005347 ORTHO05D007838 0.0e+00 2365.5 1384 85.5
Lalb_Chr20g0110491 Lupinus albus HOM05D005347 ORTHO05D007838 0.0e+00 2365.1 1384 84.7
PGR004G1765 Punica granatum HOM05D005347 ORTHO05D007838 0.0e+00 2364.7 1385 85.1
MSTRG.10814 Avicennia marina HOM05D005347 ORTHO05D007838 0.0e+00 2364.0 1384 85.3
Lalb_Chr25g0287111 Lupinus albus HOM05D005347 ORTHO05D007838 0.0e+00 2364.0 1383 84.6
CsaV3_4G011730 Cucumis sativus L. HOM05D005347 ORTHO05D007838 0.0e+00 2363.6 1385 85.2
Lj1g0017211 Lotus japonicus HOM05D005347 ORTHO05D007838 0.0e+00 2363.6 1385 85.1
Phvul.001G132200 Phaseolus vulgaris HOM05D005347 ORTHO05D007838 0.0e+00 2362.8 1385 84.3
SGA_v2.0_scaffold105G30411 Striga asiatica HOM05D005347 ORTHO05D007838 0.0e+00 2362.0 1358 86.7
Sed0003738 Sechium edule HOM05D005347 ORTHO05D007838 0.0e+00 2360.1 1385 85.1
COL.COLO4_28282 Corchorus olitorius HOM05D005347 ORTHO05D007838 0.0e+00 2357.8 1383 85.7
TAR465G0003 Trochodendron aralioides HOM05D005347 ORTHO05D007838 0.0e+00 2352.8 1383 84.7
Dinv12481 Davidia involucrata HOM05D005347 ORTHO05D007838 0.0e+00 2352.0 1390 84.7
Actinidia38547 Actinidia chinensis HOM05D005347 ORTHO05D007838 0.0e+00 2351.2 1387 84.4
Duzib128G0418 Durio zibethinus HOM05D005347 ORTHO05D007838 0.0e+00 2351.2 1358 86.2
Ca_26018_v3 Cicer arietinum L. HOM05D005347 ORTHO05D007838 0.0e+00 2350.1 1385 83.9
Ciclev10004154m.g Citrus clementina HOM05D005347 ORTHO05D007838 0.0e+00 2348.5 1365 85.3
Oeu008920.1 Olea europaea HOM05D005347 ORTHO05D007838 0.0e+00 2348.5 1383 85.0
TWI53G0247 Tripterygium wilfordii HOM05D005347 ORTHO05D007838 0.0e+00 2347.8 1384 84.8
Actinidia17237 Actinidia chinensis HOM05D005347 ORTHO05D007838 0.0e+00 2346.6 1389 84.2
CSS0016317 Camellia sinensis var. sinensis HOM05D005347 ORTHO05D007838 0.0e+00 2345.9 1385 84.3
MBI17_g13973_MAGBIO Magnolia biondii HOM05D005347 ORTHO05D007838 0.0e+00 2345.9 1393 84.6
Potri.006G051100 Populus trichocarpa HOM05D005347 ORTHO05D007838 0.0e+00 2345.9 1384 84.6
Dinv39601 Davidia involucrata HOM05D005347 ORTHO05D007838 0.0e+00 2345.5 1383 84.7
Atru.chr1.1096 Acer truncatum HOM05D005347 ORTHO05D007838 0.0e+00 2343.9 1385 84.8
Nn2g15252 Nelumbo nucifera HOM05D005347 ORTHO05D007838 0.0e+00 2342.0 1386 84.1
QL07p000318 Quercus lobata HOM05D005347 ORTHO05D007838 0.0e+00 2341.6 1399 84.1
HPP92_012089 Vanilla planifolia HOM05D005347 ORTHO05D007838 0.0e+00 2341.6 1384 85.7
EL10Ac3g07089 Beta vulgaris HOM05D005347 ORTHO05D007838 0.0e+00 2338.9 1386 83.9
Aqoxy2G00152 Aquilegia oxysepala HOM05D005347 ORTHO05D007838 0.0e+00 2338.1 1386 84.3
AUR62024447 Chenopodium quinoa HOM05D005347 ORTHO05D007838 0.0e+00 2337.8 1386 84.1
Prupe.7G061100 Prunus persica HOM05D005347 ORTHO05D007838 0.0e+00 2336.6 1384 84.1
Psat6g120040 Pisum sativum HOM05D005347 ORTHO05D007838 0.0e+00 2335.8 1384 83.7
Lsat_1_v5_gn_9_29020 Lactuca sativa HOM05D005347 ORTHO05D007838 0.0e+00 2334.7 1392 83.3
AUR62026037 Chenopodium quinoa HOM05D005347 ORTHO05D007838 0.0e+00 2334.3 1386 84.1
Gohir.D09G118200 Gossypium hirsutum HOM05D005347 ORTHO05D007838 0.0e+00 2331.2 1385 84.8
SalBow6G2907 Salvia bowleyana HOM05D005347 ORTHO05D007838 0.0e+00 2331.2 1386 84.5
Hma1.2p1_2002F.1_g310740 Hydrangea macrophylla HOM05D005347 ORTHO05D007838 0.0e+00 2329.3 1384 83.5
MD14G1072000 Malus domestica HOM05D005347 ORTHO05D007838 0.0e+00 2328.9 1384 83.7
MD12G1073700 Malus domestica HOM05D005347 ORTHO05D007838 0.0e+00 2328.5 1384 83.7
HanXRQChr10g0296641 Helianthus annuus HOM05D005347 ORTHO05D007838 0.0e+00 2328.1 1383 83.6
HanXRQChr10g0288781 Helianthus annuus HOM05D005347 ORTHO05D007838 0.0e+00 2327.0 1383 83.5
CAN.G676.69 Capsicum annuum HOM05D005347 ORTHO05D007838 0.0e+00 2323.5 1385 83.5
FAN05G5756 Fragaria x ananassa HOM05D005347 ORTHO05D007838 0.0e+00 2323.5 1383 83.8
FvH4_6g23800 Fragaria vesca HOM05D005347 ORTHO05D007838 0.0e+00 2320.8 1383 83.7
FAN14G0383 Fragaria x ananassa HOM05D005347 ORTHO05D007838 0.0e+00 2320.8 1383 83.7
Migut.J01759 Erythranthe guttata HOM05D005347 ORTHO05D007838 0.0e+00 2320.0 1383 83.4
CARHR199810 Cardamine hirsuta HOM05D005347 ORTHO05D007838 0.0e+00 2318.5 1383 83.4
DCAR_013602 Daucus carota HOM05D005347 ORTHO05D007838 0.0e+00 2318.1 1356 84.7
ECA247G2461 Erigeron canadensis HOM05D005347 ORTHO05D007838 0.0e+00 2318.1 1383 83.4
RcHm_v2.0_Chr3g0482331 Rosa chinensis HOM05D005347 ORTHO05D007838 0.0e+00 2317.7 1383 83.4
FAN02G3940 Fragaria x ananassa HOM05D005347 ORTHO05D007838 0.0e+00 2317.3 1382 83.7
Aa31sc144G60 Aethionema arabicum HOM05D005347 ORTHO05D007838 0.0e+00 2312.3 1383 82.9
Sopen04g007830 Solanum pennellii HOM05D005347 ORTHO05D007838 0.0e+00 2312.3 1383 83.3
PGSC0003DMG400027276 Solanum tuberosum HOM05D005347 ORTHO05D007838 0.0e+00 2312.3 1383 83.2
Solyc04g015750.3 Solanum lycopersicum HOM05D005347 ORTHO05D007838 0.0e+00 2311.6 1383 83.2
Sabra06G0035800 Salix brachista HOM05D005347 ORTHO05D007838 0.0e+00 2309.3 1384 83.5
BcaB01g05345 Brassica carinata HOM05D005347 ORTHO05D007838 0.0e+00 2307.7 1389 83.0
AL6G24240 Arabidopsis lyrata HOM05D005347 ORTHO05D007838 0.0e+00 2307.3 1383 82.7
Carub.0006s1179 Capsella rubella HOM05D005347 ORTHO05D007838 0.0e+00 2307.3 1383 82.9
C03p07120 Brassica napus HOM05D005347 ORTHO05D007838 0.0e+00 2306.9 1389 83.0
BolC3t13211H Brassica oleracea HOM05D005347 ORTHO05D007838 0.0e+00 2306.9 1389 83.0
Lsat_1_v5_gn_9_29121 Lactuca sativa HOM05D005347 ORTHO05D007838 0.0e+00 2306.6 1452 79.8
FAN09G2062 Fragaria x ananassa HOM05D005347 ORTHO05D007838 0.0e+00 2306.2 1410 82.1
AT5G13630 Arabidopsis thaliana HOM05D005347 ORTHO05D007838 0.0e+00 2305.8 1383 82.7
Cpa.g.sc92.51 Carica papaya HOM05D005347 ORTHO05D007838 0.0e+00 2305.8 1384 84.2
Sp6g30390 Schrenkiella parvula HOM05D005347 ORTHO05D007838 0.0e+00 2305.0 1383 82.8
Thhalv10012443m.g Eutrema salsugineum HOM05D005347 ORTHO05D007838 0.0e+00 2304.2 1383 82.8
A03p06120 Brassica napus HOM05D005347 ORTHO05D007838 0.0e+00 2300.8 1384 82.9
BraA03t09944Z Brassica rapa HOM05D005347 ORTHO05D007838 0.0e+00 2300.8 1384 82.9
Rhsim04G0102500 Rhododendron simsii HOM05D005347 ORTHO05D007838 0.0e+00 2297.7 1338 85.1
PSO384G4351 Papaver somniferum HOM05D005347 ORTHO05D007838 0.0e+00 2296.5 1383 82.7
PSO339G0901 Papaver somniferum HOM05D005347 ORTHO05D007838 0.0e+00 2291.5 1383 82.6
Haze_19858 Corylus avellana HOM05D005347 ORTHO05D007838 0.0e+00 2275.0 1384 82.9
CDE05G2234 Ceratophyllum demersum HOM05D005347 ORTHO05D007838 0.0e+00 2272.7 1380 83.0
ATR0626G393 Amborella trichopoda HOM05D005347 ORTHO05D007838 0.0e+00 2271.5 1350 83.3
Ah.13g076460 Amaranthus hybridus HOM05D005347 ORTHO05D007838 0.0e+00 2264.2 1386 82.8
SEGI_14472 Sequoiadendron giganteum HOM05D005347 ORTHO05D007838 0.0e+00 2256.5 1330 83.2
Peaxi162Scf00130g00022 Petunia axillaris HOM05D005347 ORTHO05D007838 0.0e+00 2252.2 1383 81.9
unitig_578.g15983 Utricularia gibba HOM05D005347 ORTHO05D007838 0.0e+00 2177.5 1414 78.6
SMO347G0130 Selaginella moellendorffii HOM05D005347 ORTHO05D007838 0.0e+00 2169.8 1333 79.8
AagrBONN_evm.TU.Sc2ySwM_368.2268 Anthoceros agrestis HOM05D005347 ORTHO05D007838 0.0e+00 2169.4 1344 78.8
Mapoly0008s0194 Marchantia polymorpha HOM05D005347 ORTHO05D007838 0.0e+00 2160.2 1343 79.2
Pp3c10_13960 Physcomitrium patens HOM05D005347 ORTHO05D007838 0.0e+00 2159.8 1363 78.4
Pp3c10_13970 Physcomitrium patens HOM05D005347 ORTHO05D007838 0.0e+00 2159.8 1363 78.4
vmacro09075 Vaccinium macrocarpon HOM05D005347 ORTHO05D007838 0.0e+00 2159.8 1387 78.8
CBR_g40549 Chara braunii HOM05D005347 ORTHO05D007838 0.0e+00 2151.7 1332 78.8
CiPaw.10G033300 Carya illinoinensis HOM05D005347 ORTHO05D007838 0.0e+00 2137.8 1260 85.1
Thecc.05G153600 Theobroma cacao HOM05D005347 ORTHO05D007838 0.0e+00 2127.4 1260 84.8
Sc04g0002790 Simmondsia chinensis HOM05D005347 ORTHO05D007838 0.0e+00 2110.5 1265 83.6
TPR.G10615 Trifolium pratense HOM05D005347 ORTHO05D007838 0.0e+00 2095.9 1348 78.8
Cre07.g325500 Chlamydomonas reinhardtii HOM05D005347 ORTHO05D007838 0.0e+00 1883.2 1335 69.7
Oeu017946.1 Olea europaea HOM05D005347 ORTHO05D007838 0.0e+00 1870.1 1379 71.8
MCO07G263 Micromonas commoda HOM05D005347 ORTHO05D007838 0.0e+00 1866.3 1334 69.3
Nitab4.5_0005195g0040 Nicotiana tabacum HOM05D005347 ORTHO05D007838 0.0e+00 1857.8 1120 82.9
Nitab4.5_0010636g0020 Nicotiana tabacum HOM05D005347 ORTHO05D007838 0.0e+00 1838.2 1108 82.8
GSVIVG01033277001 Vitis vinifera HOM05D005347 ORTHO05D007838 0.0e+00 1773.4 1401 68.3
Hund05283 Selenicereus undatus HOM05D005347 ORTHO05D007838 0.0e+00 1650.6 913 89.3
Hma1.2p1_2002F.1_g310730 Hydrangea macrophylla HOM05D005347 ORTHO05D007838 0.0e+00 1623.6 914 86.8
Lju124A41T48 Lonicera japonica HOM05D005347 ORTHO05D007838 0.0e+00 1573.9 896 86.7
TAR623G1548 Trochodendron aralioides HOM05D005347 ORTHO05D007838 0.0e+00 1460.7 809 88.8
TAR369G0825 Trochodendron aralioides HOM05D005347 ORTHO05D007838 0.0e+00 1450.6 808 87.7
Os07g0656500 Oryza sativa ssp. japonica HOM05D005347 ORTHO05D007838 0.0e+00 1228.0 690 90.7
Zm00001eb066400 Zea mays HOM05D005347 ORTHO05D007838 0.0e+00 1117.4 571 97.0
MD03G1176300 Malus domestica HOM05D005347 ORTHO05D021808 1.1e-310 1070.5 677 78.7
MD09G1118200 Malus domestica HOM05D005347 ORTHO05D007838 1.4e-292 1010.4 671 76.6
PRCOL_00001535 Prasinoderma coloniale HOM05D005347 ORTHO05D007838 2.3e-260 903.3 1203 44.0
TPR.G25646 Trifolium pratense HOM05D005347 ORTHO05D007838 5.2e-252 875.5 588 75.2
TAR369G0767 Trochodendron aralioides HOM05D005347 ORTHO05D021808 3.9e-207 726.5 472 79.0
TAR623G0733 Trochodendron aralioides HOM05D005347 ORTHO05D021808 8.7e-207 725.3 471 78.6
Lju124C41T11 Lonicera japonica HOM05D005347 ORTHO05D021808 4.0e-204 716.5 472 76.9
CDE07G0141 Ceratophyllum demersum HOM05D005347 ORTHO05D021808 9.9e-203 711.8 416 84.1
BcaB01g05344 Brassica carinata HOM05D005347 ORTHO05D021808 4.6e-200 703.0 471 76.2
MCO07G355 Micromonas commoda HOM05D005347 ORTHO05D034305 2.4e-172 610.9 1389 32.3
Cre11.g477625 Chlamydomonas reinhardtii HOM05D005347 ORTHO05D034305 1.6e-160 571.6 1483 30.3
CBR_g6691 Chara braunii HOM05D005347 ORTHO05D034305 1.3e-106 392.5 818 33.3
TPR.G7382 Trifolium pratense HOM05D005347 ORTHO05D030226 1.1e-84 319.7 175 88.6
Zm00001eb066410 Zea mays HOM05D005347 ORTHO05D007838 6.1e-75 287.3 147 94.6
TPR.G20810 Trifolium pratense HOM05D005347 ORTHO05D030226 4.4e-57 228.0 123 87.8
FAN15G2164 Fragaria x ananassa HOM05D005347 ORTHO05D007838 2.3e-42 179.1 107 83.2
Psat4g101600 Pisum sativum HOM05D000140 ORTHO05D014072 6.5e-37 161.0 174 51.7
Nn2g10425 Nelumbo nucifera HOM05D005347 ORTHO05D277195 1.1e-28 133.7 138 49.3
Nn7g36276 Nelumbo nucifera HOM05D005347 ORTHO05D030226 5.5e-28 131.3 99 68.7
Pp3c5_16660 Physcomitrium patens HOM05D005347 ORTHO05D030226 4.7e-27 128.3 91 71.4
Lsat_1_v5_gn_5_109040 Lactuca sativa HOM05D005347 ORTHO05D231332 7.3e-20 104.4 60 85.0


User provided reference genes

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