Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb433230 Zea mays HOM05D000172 ORTHO05D008216 6.3e-109 397.5 208 100.0
Zm00001eb066900 Zea mays HOM05D000172 ORTHO05D008216 4.2e-81 305.1 210 82.9
Os04g0669100 Oryza sativa ssp. japonica HOM05D000172 ORTHO05D008216 5.7e-70 268.1 185 77.3
CDE04G1581 Ceratophyllum demersum HOM05D000172 ORTHO05D008216 6.0e-43 178.3 162 54.9
Cfa014307 Carpinus fangiana HOM05D000172 ORTHO05D008216 1.0e-42 177.6 148 57.4
Nn1g03358 Nelumbo nucifera HOM05D000172 ORTHO05D008216 3.0e-42 176.0 167 50.9
TAR624G1331 Trochodendron aralioides HOM05D000172 ORTHO05D008216 3.9e-42 175.6 164 51.8
Aqoxy1G04174 Aquilegia oxysepala HOM05D000172 ORTHO05D008216 5.1e-42 175.3 185 48.6
Peaxi162Scf01333g00137 Petunia axillaris HOM05D000172 ORTHO05D008216 6.6e-42 174.9 184 52.7
Prupe.3G209000 Prunus persica HOM05D000172 ORTHO05D008216 8.6e-42 174.5 205 48.8
CANSAT78G2170 Cannabis sativa HOM05D000172 ORTHO05D000781 1.5e-41 173.7 128 63.3
Nitab4.5_0010117g0030 Nicotiana tabacum HOM05D000172 ORTHO05D008216 1.2e-40 170.6 184 50.5
Actinidia13731 Actinidia chinensis HOM05D000172 ORTHO05D008216 1.6e-40 170.2 147 53.7
MD17G1107300 Malus domestica HOM05D000172 ORTHO05D008216 1.6e-40 170.2 147 56.5
Sc12g0002040 Simmondsia chinensis HOM05D000172 ORTHO05D008216 2.8e-40 169.5 136 58.1
PGR142G2841 Punica granatum HOM05D000172 ORTHO05D008216 4.7e-40 168.7 142 56.3
Hma1.2p1_2406F.1_g321460 Hydrangea macrophylla HOM05D000172 ORTHO05D008216 8.1e-40 167.9 156 51.3
Hma1.2p1_0405F.1_g145530 Hydrangea macrophylla HOM05D000172 ORTHO05D008216 1.4e-39 167.2 156 51.3
MD09G1115500 Malus domestica HOM05D000172 ORTHO05D000781 1.4e-39 167.2 147 55.1
Nitab4.5_0000130g0110 Nicotiana tabacum HOM05D000172 ORTHO05D008216 1.8e-39 166.8 175 50.3
arahy.Tifrunner.gnm1.ann1.EDY71B Arachis hypogaea HOM05D000172 ORTHO05D008216 4.0e-39 165.6 196 48.5
Duzib138G0791 Durio zibethinus HOM05D000172 ORTHO05D000781 4.0e-39 165.6 147 56.5
RcHm_v2.0_Chr2g0157891 Rosa chinensis HOM05D000172 ORTHO05D008216 5.2e-39 165.2 159 52.8
MSTRG.14128 Avicennia marina HOM05D000172 ORTHO05D008216 6.8e-39 164.9 189 49.7
MBI16_g26181_MAGBIO Magnolia biondii HOM05D000172 ORTHO05D008216 6.8e-39 164.9 194 47.4
CSS0028035 Camellia sinensis var. sinensis HOM05D000172 ORTHO05D000781 8.9e-39 164.5 177 48.0
SGA_v2.0_scaffold49G18358 Striga asiatica HOM05D000172 ORTHO05D008216 8.9e-39 164.5 193 49.2
LjContig00029g0008644 Lotus japonicus HOM05D000172 ORTHO05D008216 1.2e-38 164.1 145 55.9
Manes.13G066180 Manihot esculenta HOM05D000172 ORTHO05D008216 1.2e-38 164.1 133 55.6
Sopen07g024820 Solanum pennellii HOM05D000172 ORTHO05D008216 1.5e-38 163.7 180 49.4
HPP92_000210 Vanilla planifolia HOM05D000172 ORTHO05D008216 1.5e-38 163.7 187 48.7
Lalb_Chr17g0347191 Lupinus albus HOM05D000172 ORTHO05D008216 2.0e-38 163.3 136 57.4
Sed0027341 Sechium edule HOM05D000172 ORTHO05D008216 2.0e-38 163.3 147 53.1
TWI36G0853 Tripterygium wilfordii HOM05D000172 ORTHO05D000781 2.6e-38 162.9 147 55.8
SEGI_13182 Sequoiadendron giganteum HOM05D000172 ORTHO05D008216 4.4e-38 162.2 155 53.5
HPP92_000219 Vanilla planifolia HOM05D000172 ORTHO05D008216 4.4e-38 162.2 176 50.6
Sed0000051 Sechium edule HOM05D000172 ORTHO05D008216 5.8e-38 161.8 133 57.9
PGSC0003DMG400000660 Solanum tuberosum HOM05D000172 ORTHO05D008216 5.8e-38 161.8 180 48.9
Cc05_g02620 Coffea canephora HOM05D000172 ORTHO05D008216 9.9e-38 161.0 144 54.2
CAN.G784.10 Capsicum annuum HOM05D000172 ORTHO05D008216 1.3e-37 160.6 180 50.0
Eucgr.K00733 Eucalyptus grandis HOM05D000172 ORTHO05D008216 2.2e-37 159.8 186 47.3
Glyma.02G267200 Glycine max HOM05D000172 ORTHO05D008216 2.2e-37 159.8 135 57.0
GSVIVG01030516001 Vitis vinifera HOM05D000172 ORTHO05D008216 2.2e-37 159.8 147 51.7
ClCG02G018130 Citrullus lanatus HOM05D000172 ORTHO05D008216 3.7e-37 159.1 147 52.4
Potri.014G159600 Populus trichocarpa HOM05D000172 ORTHO05D008216 3.7e-37 159.1 128 55.5
Sabra14G0121300 Salix brachista HOM05D000172 ORTHO05D008216 3.7e-37 159.1 128 55.5
Gorai.001G195500 Gossypium raimondii HOM05D000172 ORTHO05D008216 4.9e-37 158.7 144 53.5
Atru.chr6.3269 Acer truncatum HOM05D000172 ORTHO05D008216 6.4e-37 158.3 144 54.9
Phvul.008G214900 Phaseolus vulgaris HOM05D000172 ORTHO05D008216 8.3e-37 157.9 136 56.6
VMungo0647G0578 Vigna mungo HOM05D000172 ORTHO05D008216 8.3e-37 157.9 136 55.1
Cpa.g.sc132.32 Carica papaya HOM05D000172 ORTHO05D008216 1.1e-36 157.5 153 51.6
Migut.H01248 Erythranthe guttata HOM05D000172 ORTHO05D008216 1.1e-36 157.5 147 54.4
MELO3C019724.2 Cucumis melo HOM05D000172 ORTHO05D008216 1.4e-36 157.1 147 50.3
Ciclev10016727m.g Citrus clementina HOM05D000172 ORTHO05D008216 5.4e-36 155.2 214 44.9
FvH4_6g41990 Fragaria vesca HOM05D000172 ORTHO05D008216 5.4e-36 155.2 139 52.5
Rhsim06G0168800 Rhododendron simsii HOM05D000172 ORTHO05D008216 7.1e-36 154.8 176 46.6
FAN14G3302 Fragaria x ananassa HOM05D000172 ORTHO05D008216 1.6e-35 153.7 139 51.8
FAN14G3681 Fragaria x ananassa HOM05D000172 ORTHO05D008216 1.6e-35 153.7 139 51.8
Gohir.D07G174800 Gossypium hirsutum HOM05D000172 ORTHO05D008216 1.6e-35 153.7 203 44.8
HanXRQChr04g0126831 Helianthus annuus HOM05D000172 ORTHO05D008216 1.6e-35 153.7 170 48.2
PSO210G7646 Papaver somniferum HOM05D000172 ORTHO05D008216 1.6e-35 153.7 189 46.6
PSO832G3827 Papaver somniferum HOM05D000172 ORTHO05D008216 1.6e-35 153.7 189 46.0
THA.LOC104826130 Tarenaya hassleriana HOM05D000172 ORTHO05D008216 1.6e-35 153.7 147 50.3
Gohir.A07G168450 Gossypium hirsutum HOM05D000172 ORTHO05D008216 2.7e-35 152.9 203 44.8
FAN05G3852 Fragaria x ananassa HOM05D000172 ORTHO05D008216 3.5e-35 152.5 139 51.8
FAN09G4057 Fragaria x ananassa HOM05D000172 ORTHO05D000781 3.5e-35 152.5 139 52.5
EL10Ac9g22821 Beta vulgaris HOM05D000172 ORTHO05D008216 6.0e-35 151.8 149 49.7
COL.COLO4_06741 Corchorus olitorius HOM05D000172 ORTHO05D008216 7.8e-35 151.4 196 44.9
Thecc.01G183500 Theobroma cacao HOM05D000172 ORTHO05D008216 7.8e-35 151.4 210 45.2
CsaV3_6G015520 Cucumis sativus L. HOM05D000172 ORTHO05D008216 1.0e-34 151.0 147 49.7
Sp1g03860 Schrenkiella parvula HOM05D000172 ORTHO05D008216 1.3e-34 150.6 147 50.3
Psat2g026560 Pisum sativum HOM05D000172 ORTHO05D008216 1.7e-34 150.2 130 55.4
FAN02G3472 Fragaria x ananassa HOM05D000172 ORTHO05D008216 3.0e-34 149.4 139 51.1
TPR.G25655 Trifolium pratense HOM05D000172 ORTHO05D008216 3.0e-34 149.4 134 55.2
Atru.chr6.3270 Acer truncatum HOM05D000172 ORTHO05D008216 3.9e-34 149.1 210 42.9
Thhalv10008833m.g Eutrema salsugineum HOM05D000172 ORTHO05D008216 5.1e-34 148.7 173 45.7
Medtr5g084980 Medicago truncatula HOM05D000172 ORTHO05D008216 6.6e-34 148.3 133 54.1
AL1G14720 Arabidopsis lyrata HOM05D000172 ORTHO05D008216 1.5e-33 147.1 147 51.0
ATR1128G110 Amborella trichopoda HOM05D000172 ORTHO05D008216 1.9e-33 146.7 127 58.3
Carub.0001s0423 Capsella rubella HOM05D000172 ORTHO05D008216 9.5e-33 144.4 147 50.3
Lsat_1_v5_gn_7_94941 Lactuca sativa HOM05D000172 ORTHO05D008216 2.8e-32 142.9 179 45.3
Dinv39759 Davidia involucrata HOM05D000172 ORTHO05D008216 6.2e-32 141.7 121 55.4
BraA08t35564Z Brassica rapa HOM05D001534 ORTHO05D003503 2.4e-31 139.8 147 46.9
unitig_578.g16772 Utricularia gibba HOM05D000172 ORTHO05D008216 2.4e-31 139.8 173 46.2
BcaB03g13463 Brassica carinata HOM05D000172 ORTHO05D008216 3.1e-31 139.4 147 46.9
BcaC07g36869 Brassica carinata HOM05D001534 ORTHO05D003503 4.0e-31 139.0 147 46.9
A08p36620 Brassica napus HOM05D001534 ORTHO05D003503 4.0e-31 139.0 147 46.9
C08p01620 Brassica napus HOM05D001534 ORTHO05D003503 4.0e-31 139.0 147 46.9
BolC8t46965H Brassica oleracea HOM05D001534 ORTHO05D003503 4.0e-31 139.0 147 46.9
CARHR004400 Cardamine hirsuta HOM05D000172 ORTHO05D008216 1.5e-30 137.1 145 49.0
SalBow1G7277 Salvia bowleyana HOM05D000172 ORTHO05D008216 2.6e-30 136.3 195 43.1
QL08p030202 Quercus lobata HOM05D000172 ORTHO05D008216 1.1e-28 131.0 123 51.2
vmacro12154 Vaccinium macrocarpon HOM05D000172 ORTHO05D008216 2.4e-28 129.8 106 53.8
Solyc07g049470.4 Solanum lycopersicum HOM05D000172 ORTHO05D008216 1.6e-27 127.1 154 47.4
QL93p0185_0050 Quercus lobata HOM05D000172 ORTHO05D008216 2.1e-27 126.7 123 50.4
AUR62015120 Chenopodium quinoa HOM05D000172 ORTHO05D008216 1.0e-26 124.4 106 56.6
arahy.Tifrunner.gnm1.ann1.YBUA9J Arachis hypogaea HOM05D000172 ORTHO05D008216 1.3e-26 124.0 98 61.2
ECA236G1458 Erigeron canadensis HOM05D000002 ORTHO05D000001 6.6e-26 121.7 181 39.2
arahy.Tifrunner.gnm1.ann1.Z24BKS Arachis hypogaea HOM05D000172 ORTHO05D008216 1.9e-25 120.2 103 59.2
arahy.Tifrunner.gnm1.ann1.2252MW Arachis hypogaea HOM05D000172 ORTHO05D008216 1.6e-24 117.1 102 58.8
Pp3c2_22540 Physcomitrium patens HOM05D000172 ORTHO05D008216 2.1e-24 116.7 186 37.1
DCAR_019254 Daucus carota HOM05D000172 ORTHO05D008216 4.7e-24 115.5 120 45.8
Aa31LG1G19790 Aethionema arabicum HOM05D000172 ORTHO05D008216 2.2e-21 106.7 180 37.2
arahy.Tifrunner.gnm1.ann1.YE9ADV Arachis hypogaea HOM05D000172 ORTHO05D008216 4.9e-21 105.5 94 57.4
DCAR_021133 Daucus carota HOM05D000172 ORTHO05D008216 1.6e-19 100.5 78 56.4
SalBow1G5012 Salvia bowleyana HOM05D000172 ORTHO05D008216 2.7e-19 99.8 187 36.9
arahy.Tifrunner.gnm1.ann1.R9GX0H Arachis hypogaea HOM05D000172 ORTHO05D008216 1.0e-18 97.8 94 53.2
Glyma.14G050300 Glycine max HOM05D000172 ORTHO05D008216 3.9e-18 95.9 87 52.9
AagrBONN_evm.TU.Sc2ySwM_228.5805 Anthoceros agrestis HOM05D000172 ORTHO05D008216 7.3e-17 91.7 108 42.6
CiPaw.03G154000 Carya illinoinensis HOM05D000172 ORTHO05D008216 1.1e-15 87.8 118 39.8
CDE07G1564 Ceratophyllum demersum HOM05D000172 ORTHO05D008216 1.4e-15 87.4 103 48.5
AT1G04985 Arabidopsis thaliana HOM05D000172 ORTHO05D008216 1.8e-15 87.0 85 49.4
arahy.Tifrunner.gnm1.ann1.J9YZDG Arachis hypogaea HOM05D000172 ORTHO05D008216 2.4e-15 86.7 85 51.8
SMO111G0036 Selaginella moellendorffii HOM05D000172 ORTHO05D008216 3.1e-15 86.3 117 40.2
SMO358G0556 Selaginella moellendorffii HOM05D000172 ORTHO05D008216 3.1e-15 86.3 117 40.2
Aqoxy1G04172 Aquilegia oxysepala HOM05D000172 ORTHO05D008216 2.0e-14 83.6 102 47.1
SEGI_22849 Sequoiadendron giganteum HOM05D000172 ORTHO05D008216 2.2e-13 80.1 48 72.9
CBR_g23765 Chara braunii HOM05D000172 ORTHO05D008216 3.8e-13 79.3 105 39.0
Oeu003064.1 Olea europaea HOM05D000172 ORTHO05D008216 4.2e-12 75.9 68 52.9
arahy.Tifrunner.gnm1.ann1.971VLJ Arachis hypogaea HOM05D000172 ORTHO05D008216 1.1e-09 67.8 132 34.1
arahy.Tifrunner.gnm1.ann1.J7SF2C Arachis hypogaea HOM05D000172 ORTHO05D008216 1.1e-09 67.8 64 48.4
arahy.Tifrunner.gnm1.ann1.UD09X1 Arachis hypogaea HOM05D000172 ORTHO05D008216 1.1e-09 67.8 107 38.3
arahy.Tifrunner.gnm1.ann1.7XK0ZA Arachis hypogaea HOM05D000172 ORTHO05D008216 3.3e-09 66.2 68 45.6
Haze_12755 Corylus avellana HOM05D000172 ORTHO05D008216 3.3e-09 66.2 160 30.0
DCAR_021134 Daucus carota HOM05D000172 ORTHO05D008216 2.1e-08 63.5 48 56.2
DCAR_021132 Daucus carota HOM05D000172 ORTHO05D008216 3.7e-08 62.8 110 38.2
arahy.Tifrunner.gnm1.ann1.XV84RB Arachis hypogaea HOM05D000172 ORTHO05D008216 2.4e-07 60.1 65 44.6


User provided reference genes

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