Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb432680 Zea mays HOM05D008312 ORTHO05D010433 4.3e-101 371.3 185 100.0
Zm00001eb076970 Zea mays HOM05D008312 ORTHO05D010433 5.4e-96 354.4 185 94.1
Zm00001eb038940 Zea mays HOM05D008312 ORTHO05D010433 7.1e-96 354.0 185 93.5
Zm00001eb062610 Zea mays HOM05D008312 ORTHO05D010433 3.5e-95 351.7 185 93.0
Zm00001eb219340 Zea mays HOM05D008312 ORTHO05D010433 4.6e-95 351.3 185 93.5
Zm00001eb225330 Zea mays HOM05D008312 ORTHO05D010433 2.3e-94 349.0 185 91.9
Zm00001eb425000 Zea mays HOM05D008312 ORTHO05D010433 9.3e-48 194.1 185 49.2
Zm00001eb346080 Zea mays HOM05D008312 ORTHO05D010433 4.8e-44 181.8 185 49.2
Zm00001eb290230 Zea mays HOM05D008312 ORTHO05D010433 7.7e-42 174.5 185 45.4
Zm00001eb113510 Zea mays HOM05D008312 ORTHO05D010433 9.4e-40 167.5 89 94.4
Zm00001eb359870 Zea mays HOM05D008312 ORTHO05D010433 8.8e-38 161.0 159 57.9
Zm00001eb043290 Zea mays HOM05D008312 ORTHO05D010433 7.7e-34 147.9 79 93.7
Zm00001eb377220 Zea mays HOM05D008312 ORTHO05D010433 5.0e-33 145.2 124 53.2
Zm00001eb261160 Zea mays HOM05D008312 ORTHO05D010433 6.1e-31 138.3 124 50.8
Zm00001eb104440 Zea mays HOM05D008312 ORTHO05D010433 2.3e-30 136.3 69 92.8
Zm00001eb045590 Zea mays HOM05D008312 ORTHO05D010433 3.1e-27 125.9 110 56.4
Zm00001eb085670 Zea mays HOM05D008312 ORTHO05D010433 2.6e-21 106.3 182 33.5
Os07g0418100 Oryza sativa ssp. japonica HOM05D008312 ORTHO05D010433 6.3e-20 101.7 79 54.4
Os03g0429900 Oryza sativa ssp. japonica HOM05D008312 ORTHO05D010433 8.2e-20 101.3 145 35.9
Zm00001eb046150 Zea mays HOM05D004700 ORTHO05D005576 8.2e-20 101.3 151 42.4
Zm00001eb376030 Zea mays HOM05D008312 ORTHO05D010433 8.2e-20 101.3 173 37.0
Zm00001eb009670 Zea mays HOM05D008312 ORTHO05D010433 1.1e-19 100.9 145 34.5
Zm00001eb346740 Zea mays HOM05D008312 ORTHO05D010433 3.1e-19 99.4 151 32.5
Zm00001eb159950 Zea mays HOM05D008312 ORTHO05D010433 2.7e-18 96.3 103 44.7
Zm00001eb179900 Zea mays HOM05D008312 ORTHO05D010433 1.0e-17 94.4 162 35.2
Zm00001eb255630 Zea mays HOM05D008312 ORTHO05D010433 1.7e-17 93.6 47 95.7
Zm00001eb171160 Zea mays HOM05D008312 ORTHO05D010433 1.1e-16 90.9 187 29.9
Zm00001eb388870 Zea mays HOM05D008312 ORTHO05D010433 3.2e-16 89.4 183 26.8
Zm00001eb388900 Zea mays HOM05D008312 ORTHO05D010433 5.5e-16 88.6 145 31.7
Zm00001eb330390 Zea mays HOM05D008312 ORTHO05D010433 1.2e-15 87.4 155 32.3
Zm00001eb360680 Zea mays HOM05D008312 ORTHO05D010433 2.1e-15 86.7 65 60.0
Os01g0846000 Oryza sativa ssp. japonica HOM05D026537 ORTHO05D010433 3.6e-15 85.9 143 33.6
Os10g0197600 Oryza sativa ssp. japonica HOM05D008312 ORTHO05D010433 3.6e-15 85.9 82 46.3
Os03g0855700 Oryza sativa ssp. japonica HOM05D026537 ORTHO05D000065 1.8e-14 83.6 160 31.9
Os07g0190600 Oryza sativa ssp. japonica HOM05D008312 ORTHO05D007430 2.0e-13 80.1 155 30.3
Os12g0539751 Oryza sativa ssp. japonica HOM05D026537 ORTHO05D010037 2.2e-12 76.6 185 28.6
Os12g0459300 Oryza sativa ssp. japonica HOM05D008312 ORTHO05D010433 2.4e-11 73.2 87 37.9
Zm00001eb245100 Zea mays HOM05D008312 ORTHO05D010433 3.1e-11 72.8 49 63.3
Os02g0528500 Oryza sativa ssp. japonica HOM05D008312 ORTHO05D010433 5.4e-11 72.0 79 41.8
Zm00001eb239440 Zea mays HOM05D000777 ORTHO05D010433 1.6e-10 70.5 166 31.3
Zm00001eb315800 Zea mays HOM05D000777 ORTHO05D010433 1.6e-10 70.5 166 31.3
Zm00001eb379360 Zea mays HOM05D008312 ORTHO05D010433 1.6e-10 70.5 166 31.3
Zm00001eb296900 Zea mays HOM05D008312 ORTHO05D010433 2.0e-10 70.1 163 31.3
Os01g0932000 Oryza sativa ssp. japonica HOM05D008312 ORTHO05D010433 2.7e-10 69.7 79 44.3
Os09g0456900 Oryza sativa ssp. japonica HOM05D008312 ORTHO05D010433 7.7e-10 68.2 77 40.3
Zm00001eb104450 Zea mays HOM05D008312 ORTHO05D010433 1.3e-09 67.4 31 100.0
Zm00001eb123030 Zea mays HOM05D008312 ORTHO05D010433 1.3e-09 67.4 31 100.0
Zm00001eb193210 Zea mays HOM05D008312 ORTHO05D010433 1.3e-09 67.4 31 100.0
Os07g0113000 Oryza sativa ssp. japonica HOM05D008312 ORTHO05D010433 3.8e-09 65.9 79 40.5
TWI53G0762 Tripterygium wilfordii HOM05D002907 ORTHO05D007430 3.8e-09 65.9 150 25.3
ATR0177G023 Amborella trichopoda HOM05D000824 ORTHO05D003555 1.9e-08 63.5 144 34.7
Os01g0390300 Oryza sativa ssp. japonica HOM05D008312 ORTHO05D010433 1.9e-08 63.5 78 38.5
TWI63G0188 Tripterygium wilfordii HOM05D002907 ORTHO05D000065 1.9e-08 63.5 150 26.0
Ca_21770_v3 Cicer arietinum L. HOM05D000824 ORTHO05D003555 2.5e-08 63.2 146 34.9
MD14G1212400 Malus domestica HOM05D000824 ORTHO05D003555 2.5e-08 63.2 154 33.1
Prupe.5G205700 Prunus persica HOM05D000824 ORTHO05D003555 2.5e-08 63.2 146 33.6
Zm00001eb043660 Zea mays HOM05D008312 ORTHO05D010433 2.5e-08 63.2 44 61.4
Zm00001eb387180 Zea mays HOM05D008312 ORTHO05D010433 2.5e-08 63.2 44 61.4
Lalb_Chr12g0197221 Lupinus albus HOM05D000824 ORTHO05D003555 3.2e-08 62.8 174 32.2
Nn4g23436 Nelumbo nucifera HOM05D000824 ORTHO05D003555 4.2e-08 62.4 143 33.6
SGA_v2.0_scaffold25G10955 Striga asiatica HOM05D000824 ORTHO05D003555 4.2e-08 62.4 135 34.8
SGA_v2.0_scaffold28G11745 Striga asiatica HOM05D000824 ORTHO05D003555 4.2e-08 62.4 148 33.8
Thecc.06G012500 Theobroma cacao HOM05D007876 ORTHO05D007430 4.2e-08 62.4 150 24.7
TWI56G0628 Tripterygium wilfordii HOM05D002907 ORTHO05D000065 5.5e-08 62.0 155 25.8
Zm00001eb317980 Zea mays HOM05D008312 ORTHO05D010433 7.2e-08 61.6 44 61.4
MD06G1225500 Malus domestica HOM05D000824 ORTHO05D003555 9.5e-08 61.2 135 34.8
Nitab4.5_0009401g0060 Nicotiana tabacum HOM05D000824 ORTHO05D003555 9.5e-08 61.2 135 34.8
Atru.chr9.564 Acer truncatum HOM05D000824 ORTHO05D003555 2.8e-07 59.7 146 33.6
Ah.02g114080 Amaranthus hybridus HOM05D000824 ORTHO05D003555 2.8e-07 59.7 135 36.3
Dinv22775 Davidia involucrata HOM05D000824 ORTHO05D003555 2.8e-07 59.7 135 35.6
Medtr4g109580 Medicago truncatula HOM05D000824 ORTHO05D003555 2.8e-07 59.7 164 32.3
Sopen03g034120 Solanum pennellii HOM05D000824 ORTHO05D003555 2.8e-07 59.7 135 34.1
PGSC0003DMG400024634 Solanum tuberosum HOM05D000824 ORTHO05D003555 2.8e-07 59.7 135 34.1
Aqoxy4G01036 Aquilegia oxysepala HOM05D000100 ORTHO05D000052 3.6e-07 59.3 182 25.8
MSTRG.22957 Avicennia marina HOM05D000824 ORTHO05D003555 3.6e-07 59.3 143 32.9
Nitab4.5_0001485g0110 Nicotiana tabacum HOM05D000824 ORTHO05D003555 3.6e-07 59.3 130 34.6
CAN.G1228.20 Capsicum annuum HOM05D000824 ORTHO05D003555 4.7e-07 58.9 146 32.9
Eucgr.B00599 Eucalyptus grandis HOM05D000824 ORTHO05D003555 4.7e-07 58.9 135 34.8
TPR.G2021 Trifolium pratense HOM05D000824 ORTHO05D003555 4.7e-07 58.9 146 33.6
Solyc03g115050.3 Solanum lycopersicum HOM05D000824 ORTHO05D003555 6.1e-07 58.5 135 33.3
AagrBONN_evm.TU.Sc2ySwM_228.2389 Anthoceros agrestis HOM05D000824 ORTHO05D003555 8.0e-07 58.2 129 33.3
Cc00_g07660 Coffea canephora HOM05D000824 ORTHO05D003555 8.0e-07 58.2 146 33.6
Lj5A102T96 Lonicera japonica HOM05D000824 ORTHO05D003555 8.0e-07 58.2 135 33.3
Psat4g047800 Pisum sativum HOM05D000824 ORTHO05D003555 8.0e-07 58.2 141 33.3
Actinidia04822 Actinidia chinensis HOM05D000824 ORTHO05D003555 1.0e-06 57.8 131 34.4
Lj9C471T8 Lonicera japonica HOM05D000824 ORTHO05D003555 1.0e-06 57.8 148 33.1
Rhsim08G0145600 Rhododendron simsii HOM05D000824 ORTHO05D003555 1.0e-06 57.8 154 30.5
BcaB08g37297 Brassica carinata HOM05D000824 ORTHO05D003555 1.4e-06 57.4 142 32.4
CSS0009813 Camellia sinensis var. sinensis HOM05D000824 ORTHO05D003555 1.8e-06 57.0 140 33.6
CSS0043196 Camellia sinensis var. sinensis HOM05D000824 ORTHO05D003555 1.8e-06 57.0 140 33.6
Dinv17419 Davidia involucrata HOM05D000824 ORTHO05D003555 1.8e-06 57.0 135 34.1
Glyma.05G020600 Glycine max HOM05D000824 ORTHO05D003555 1.8e-06 57.0 142 33.8
HPP92_014050 Vanilla planifolia HOM05D000824 ORTHO05D003555 1.8e-06 57.0 135 32.6
CANSAT80G1236 Cannabis sativa HOM05D000824 ORTHO05D003555 2.3e-06 56.6 146 32.2
Actinidia16130 Actinidia chinensis HOM05D000824 ORTHO05D003555 3.0e-06 56.2 131 35.1
Sc04g0004360 Simmondsia chinensis HOM05D000824 ORTHO05D003555 3.0e-06 56.2 135 33.3
BcaB01g05642 Brassica carinata HOM05D000824 ORTHO05D003555 5.2e-06 55.5 135 31.9
BraA03t09704Z Brassica rapa HOM05D000824 ORTHO05D003555 5.2e-06 55.5 135 31.9
DCAR_023168 Daucus carota HOM05D000824 ORTHO05D003555 5.2e-06 55.5 135 32.6
HanXRQChr16g0517661 Helianthus annuus HOM05D000824 ORTHO05D003555 5.2e-06 55.5 142 35.2
Peaxi162Scf00201g00330 Petunia axillaris HOM05D000824 ORTHO05D003555 5.2e-06 55.5 135 32.6
Thecc.03G102500 Theobroma cacao HOM05D000824 ORTHO05D003555 5.2e-06 55.5 148 31.1
BolC3t12936H Brassica oleracea HOM05D000824 ORTHO05D003555 6.8e-06 55.1 135 31.9
Lsat_1_v5_gn_1_14461 Lactuca sativa HOM05D000824 ORTHO05D003555 6.8e-06 55.1 150 30.7
Mapoly0109s0044 Marchantia polymorpha HOM05D000824 ORTHO05D003555 6.8e-06 55.1 173 29.5
EL10Ac5g11138 Beta vulgaris HOM05D000824 ORTHO05D003555 8.8e-06 54.7 157 30.6
Cpa.g.sc1086.1 Carica papaya HOM05D000824 ORTHO05D003555 8.8e-06 54.7 135 31.9
AUR62008537 Chenopodium quinoa HOM05D000824 ORTHO05D003555 8.8e-06 54.7 155 32.3
AUR62021554 Chenopodium quinoa HOM05D000824 ORTHO05D003555 8.8e-06 54.7 155 32.3
Thhalv10013014m.g Eutrema salsugineum HOM05D000824 ORTHO05D003555 8.8e-06 54.7 153 32.0
FAN13G2002 Fragaria x ananassa HOM05D000824 ORTHO05D003555 8.8e-06 54.7 140 30.0
Hma1.2p1_0045F.1_g026410 Hydrangea macrophylla HOM05D000096 ORTHO05D000045 8.8e-06 54.7 135 26.7
QL10p019699 Quercus lobata HOM05D000824 ORTHO05D003555 8.8e-06 54.7 135 32.6
VMungo1215G1142 Vigna mungo HOM05D000824 ORTHO05D003555 8.8e-06 54.7 143 32.2


User provided reference genes

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