Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb432400 Zea mays HOM05D007223 ORTHO05D008932 1.1e-72 276.9 193 100.0
Os04g0653300 Oryza sativa ssp. japonica HOM05D007223 ORTHO05D008932 2.5e-27 126.3 108 61.1
Sed0023808 Sechium edule HOM05D007223 ORTHO05D008932 2.7e-21 106.3 120 50.0
GSVIVG01029215001 Vitis vinifera HOM05D007223 ORTHO05D008932 4.6e-21 105.5 122 49.2
MELO3C004026.2 Cucumis melo HOM05D007223 ORTHO05D008932 2.3e-20 103.2 109 48.6
Cc06_g13230 Coffea canephora HOM05D007223 ORTHO05D008932 3.0e-20 102.8 101 49.5
CsaV3_2G008380 Cucumis sativus L. HOM05D007223 ORTHO05D008932 8.6e-20 101.3 122 46.7
BraA10t43566Z Brassica rapa HOM05D007223 ORTHO05D008932 1.1e-19 100.9 111 46.8
Manes.14G153900 Manihot esculenta HOM05D007223 ORTHO05D008932 1.5e-19 100.5 125 45.6
MBI16_g39833_MAGBIO Magnolia biondii HOM05D007223 ORTHO05D008932 1.9e-19 100.1 129 45.7
MD13G1253600 Malus domestica HOM05D007223 ORTHO05D008932 1.9e-19 100.1 129 45.0
A10p14870 Brassica napus HOM05D007223 ORTHO05D008932 2.5e-19 99.8 103 50.5
C09p49290 Brassica napus HOM05D007223 ORTHO05D008932 2.5e-19 99.8 103 50.5
BolC9t57780H Brassica oleracea HOM05D007223 ORTHO05D008932 2.5e-19 99.8 103 50.5
MSTRG.19707 Avicennia marina HOM05D007223 ORTHO05D008932 3.3e-19 99.4 111 47.7
Duzib170G0975 Durio zibethinus HOM05D007223 ORTHO05D008932 3.3e-19 99.4 103 48.5
Eucgr.C02329 Eucalyptus grandis HOM05D007223 ORTHO05D008932 3.3e-19 99.4 109 46.8
Nn8g40486 Nelumbo nucifera HOM05D007223 ORTHO05D008932 3.3e-19 99.4 100 49.0
MBI14_g17369_MAGBIO Magnolia biondii HOM05D003252 ORTHO05D003640 4.3e-19 99.0 128 46.1
RcHm_v2.0_Chr4g0402441 Rosa chinensis HOM05D007223 ORTHO05D008932 4.3e-19 99.0 100 51.0
Atru.chr7.623 Acer truncatum HOM05D007223 ORTHO05D008932 5.6e-19 98.6 102 50.0
ClCG11G012160 Citrullus lanatus HOM05D007223 ORTHO05D008932 7.3e-19 98.2 97 52.6
FAN17G0481 Fragaria x ananassa HOM05D007223 ORTHO05D008932 7.3e-19 98.2 100 51.0
FAN22G1200 Fragaria x ananassa HOM05D007223 ORTHO05D008932 7.3e-19 98.2 100 51.0
Oeu004200.1 Olea europaea HOM05D007223 ORTHO05D008932 7.3e-19 98.2 100 49.0
SGA_v2.0_scaffold69G23253 Striga asiatica HOM05D007223 ORTHO05D008932 9.5e-19 97.8 123 43.9
Duzib168G2276 Durio zibethinus HOM05D007223 ORTHO05D008932 1.2e-18 97.4 132 43.2
Prupe.1G085900 Prunus persica HOM05D007223 ORTHO05D008932 1.2e-18 97.4 100 50.0
Sp6g19140 Schrenkiella parvula HOM05D007223 ORTHO05D008932 1.2e-18 97.4 100 48.0
THA.LOC104813522 Tarenaya hassleriana HOM05D007223 ORTHO05D008932 1.2e-18 97.4 118 46.6
Thecc.09G177700 Theobroma cacao HOM05D007223 ORTHO05D008932 1.2e-18 97.4 102 50.0
TAR383G1061 Trochodendron aralioides HOM05D007223 ORTHO05D008932 1.2e-18 97.4 100 50.0
AT5G57420 Arabidopsis thaliana HOM05D007223 ORTHO05D008932 1.6e-18 97.1 100 49.0
CiPaw.08G036200 Carya illinoinensis HOM05D007223 ORTHO05D008932 1.6e-18 97.1 100 48.0
Ciclev10010470m.g Citrus clementina HOM05D007223 ORTHO05D008932 1.6e-18 97.1 102 49.0
Thhalv10015874m.g Eutrema salsugineum HOM05D007223 ORTHO05D008932 1.6e-18 97.1 100 49.0
Oeu042168.1 Olea europaea HOM05D007223 ORTHO05D008932 1.6e-18 97.1 100 50.0
QL02p097776 Quercus lobata HOM05D007223 ORTHO05D008932 1.6e-18 97.1 102 49.0
THA.LOC104817792 Tarenaya hassleriana HOM05D007223 ORTHO05D008932 1.6e-18 97.1 103 49.5
BcaB08g36098 Brassica carinata HOM05D007223 ORTHO05D008932 2.1e-18 96.7 100 50.0
BcaC04g19969 Brassica carinata HOM05D007223 ORTHO05D008932 2.1e-18 96.7 100 50.0
Lsat_1_v5_gn_5_85421 Lactuca sativa HOM05D007223 ORTHO05D008932 2.1e-18 96.7 104 47.1
PGR102G0813 Punica granatum HOM05D007223 ORTHO05D008932 2.1e-18 96.7 117 45.3
COL.COLO4_37700 Corchorus olitorius HOM05D007223 ORTHO05D008932 2.8e-18 96.3 100 49.0
Dinv41246 Davidia involucrata HOM05D007223 ORTHO05D008932 2.8e-18 96.3 100 49.0
HanXRQChr10g0308641 Helianthus annuus HOM05D007223 ORTHO05D008932 2.8e-18 96.3 104 56.7
Lalb_Chr13g0300221 Lupinus albus HOM05D007223 ORTHO05D008932 2.8e-18 96.3 102 49.0
A02p08480 Brassica napus HOM05D007223 ORTHO05D008932 3.6e-18 95.9 100 48.0
Carub.0008s1794 Capsella rubella HOM05D007223 ORTHO05D008932 3.6e-18 95.9 100 50.0
Haze_22095 Corylus avellana HOM05D007223 ORTHO05D008932 3.6e-18 95.9 133 39.8
vmacro13125 Vaccinium macrocarpon HOM05D007223 ORTHO05D008932 3.6e-18 95.9 137 42.3
AL8G33400 Arabidopsis lyrata HOM05D007223 ORTHO05D008932 4.7e-18 95.5 100 49.0
BcaC03g14153 Brassica carinata HOM05D007223 ORTHO05D008932 4.7e-18 95.5 100 48.0
C02p14240 Brassica napus HOM05D007223 ORTHO05D008932 4.7e-18 95.5 100 48.0
BolC2t07548H Brassica oleracea HOM05D007223 ORTHO05D008932 4.7e-18 95.5 100 48.0
BraA02t05920Z Brassica rapa HOM05D007223 ORTHO05D008932 4.7e-18 95.5 100 48.0
FvH4_4g08200 Fragaria vesca HOM05D007223 ORTHO05D008932 4.7e-18 95.5 100 50.0
FAN12G3200 Fragaria x ananassa HOM05D007223 ORTHO05D008932 4.7e-18 95.5 100 50.0
Gohir.A08G084300 Gossypium hirsutum HOM05D007223 ORTHO05D008932 4.7e-18 95.5 102 49.0
Gohir.D08G093900 Gossypium hirsutum HOM05D007223 ORTHO05D008932 4.7e-18 95.5 102 49.0
Gorai.004G099600 Gossypium raimondii HOM05D007223 ORTHO05D008932 4.7e-18 95.5 102 49.0
Cfa013503 Carpinus fangiana HOM05D007223 ORTHO05D008932 6.2e-18 95.1 102 47.1
TAR625G0650 Trochodendron aralioides HOM05D007223 ORTHO05D008932 6.2e-18 95.1 100 48.0
Cpa.g.sc233.11 Carica papaya HOM05D007223 ORTHO05D008932 8.1e-18 94.7 102 50.0
FAN07G1685 Fragaria x ananassa HOM05D007223 ORTHO05D008932 8.1e-18 94.7 100 49.0
MSTRG.6217 Avicennia marina HOM05D007223 ORTHO05D008932 1.1e-17 94.4 100 49.0
arahy.Tifrunner.gnm1.ann1.LBMC6N Arachis hypogaea HOM05D007223 ORTHO05D008932 1.4e-17 94.0 100 60.0
Peaxi162Scf00231g00621 Petunia axillaris HOM05D007223 ORTHO05D008932 1.4e-17 94.0 109 44.0
CSS0040203 Camellia sinensis var. sinensis HOM05D007223 ORTHO05D008932 1.8e-17 93.6 100 48.0
CANSAT11G1503 Cannabis sativa HOM05D007223 ORTHO05D008932 1.8e-17 93.6 138 43.5
PSO782G5105 Papaver somniferum HOM05D007223 ORTHO05D008932 1.8e-17 93.6 106 45.3
Sabra06G0129600 Salix brachista HOM05D007223 ORTHO05D008932 1.8e-17 93.6 100 47.0
Aa31LG3G13310 Aethionema arabicum HOM05D007223 ORTHO05D008932 2.3e-17 93.2 100 48.0
CARHR271220 Cardamine hirsuta HOM05D007223 ORTHO05D008932 2.3e-17 93.2 100 48.0
Potri.006G166900 Populus trichocarpa HOM05D007223 ORTHO05D008932 2.3e-17 93.2 100 47.0
Dinv42721 Davidia involucrata HOM05D007223 ORTHO05D008932 3.1e-17 92.8 105 46.7
Dinv43380 Davidia involucrata HOM05D007223 ORTHO05D008932 3.1e-17 92.8 105 46.7
Lalb_Chr07g0180471 Lupinus albus HOM05D007223 ORTHO05D008932 3.1e-17 92.8 100 47.0
Rhsim01G0004500 Rhododendron simsii HOM05D007223 ORTHO05D008932 3.1e-17 92.8 100 49.0
Psat4g012360 Pisum sativum HOM05D007223 ORTHO05D008932 4.0e-17 92.4 100 49.0
arahy.Tifrunner.gnm1.ann1.1E3WXN Arachis hypogaea HOM05D007223 ORTHO05D008932 5.2e-17 92.0 105 61.9
Potri.018G092300 Populus trichocarpa HOM05D007223 ORTHO05D008932 5.2e-17 92.0 100 45.0
BcaB05g22346 Brassica carinata HOM05D007223 ORTHO05D008932 6.8e-17 91.7 102 46.1
Ca_21226_v3 Cicer arietinum L. HOM05D007223 ORTHO05D008932 8.9e-17 91.3 106 47.2
Medtr4g128070 Medicago truncatula HOM05D007223 ORTHO05D008932 8.9e-17 91.3 102 48.0
Hma1.2p1_1025F.1_g249310 Hydrangea macrophylla HOM05D007223 ORTHO05D008932 1.2e-16 90.9 92 50.0
Phvul.003G145600 Phaseolus vulgaris HOM05D007223 ORTHO05D008932 1.2e-16 90.9 100 47.0
Lj4g0003272 Lotus japonicus HOM05D007223 ORTHO05D008932 1.5e-16 90.5 104 45.2
SalBow6G4081 Salvia bowleyana HOM05D007223 ORTHO05D008932 1.5e-16 90.5 100 47.0
DCAR_014699 Daucus carota HOM05D007223 ORTHO05D008932 4.4e-16 89.0 103 46.6
AUR62033216 Chenopodium quinoa HOM05D007223 ORTHO05D008932 5.8e-16 88.6 99 58.6
Migut.J01482 Erythranthe guttata HOM05D007223 ORTHO05D008932 7.5e-16 88.2 106 48.1
Actinidia04146 Actinidia chinensis HOM05D007223 ORTHO05D008932 9.8e-16 87.8 102 44.1
EL10Ac8g18282 Beta vulgaris HOM05D007223 ORTHO05D008932 9.8e-16 87.8 94 50.0
ECA234G1236 Erigeron canadensis HOM05D007223 ORTHO05D008932 1.7e-15 87.0 96 58.3
HPP92_017414 Vanilla planifolia HOM05D007223 ORTHO05D008932 1.7e-15 87.0 127 41.7
ATR0580G272 Amborella trichopoda HOM05D007223 ORTHO05D008932 4.9e-15 85.5 115 40.0
VMungo1215G0104 Vigna mungo HOM05D007223 ORTHO05D008932 4.9e-15 85.5 100 44.0
Lj5C590T0 Lonicera japonica HOM05D007223 ORTHO05D008932 8.3e-15 84.7 95 49.5
Lj5C7T1 Lonicera japonica HOM05D007223 ORTHO05D008932 8.3e-15 84.7 95 49.5
TPR.G5371 Trifolium pratense HOM05D007223 ORTHO05D008932 8.3e-15 84.7 100 46.0
SEGI_39293 Sequoiadendron giganteum HOM05D007223 ORTHO05D008932 1.6e-13 80.5 92 45.7
Solyc07g019450.3 Solanum lycopersicum HOM05D007223 ORTHO05D008932 3.0e-12 76.3 92 43.5
PGSC0003DMG400043142 Solanum tuberosum HOM05D007223 ORTHO05D008932 1.9e-11 73.6 92 41.3
Mapoly0013s0010 Marchantia polymorpha HOM05D007223 ORTHO05D008932 1.3e-07 60.8 91 36.3
CBR_g19697 Chara braunii HOM05D000117 ORTHO05D008932 2.9e-07 59.7 90 43.3
Nitab4.5_0001972g0010 Nicotiana tabacum HOM05D007223 ORTHO05D008932 1.9e-06 57.0 44 59.1
CBR_g39692 Chara braunii HOM05D000117 ORTHO05D000070 7.1e-06 55.1 90 33.3
SMO170G0055 Selaginella moellendorffii HOM05D058183 ORTHO05D008932 9.2e-06 54.7 86 37.2


User provided reference genes

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