Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb432290 Zea mays HOM05D004770 ORTHO05D005572 4.6e-98 361.3 191 100.0
Zm00001eb222890 Zea mays HOM05D004770 ORTHO05D005572 2.3e-41 172.9 106 84.9
Oeu025750.1 Olea europaea HOM05D004770 ORTHO05D005572 6.1e-34 148.3 92 75.0
COL.COLO4_09057 Corchorus olitorius HOM05D001769 ORTHO05D001695 2.3e-33 146.4 92 78.3
Sc05g0001180 Simmondsia chinensis HOM05D004770 ORTHO05D005572 3.9e-33 145.6 91 75.8
Atru.chr5.1488 Acer truncatum HOM05D004770 ORTHO05D005572 6.7e-33 144.8 92 76.1
CAN.G1549.14 Capsicum annuum HOM05D004770 ORTHO05D005572 8.8e-33 144.4 92 75.0
Eucgr.G02085 Eucalyptus grandis HOM05D004770 ORTHO05D005572 8.8e-33 144.4 92 77.2
MBI02_g08255_MAGBIO Magnolia biondii HOM05D004770 ORTHO05D005572 1.1e-32 144.1 92 75.0
Manes.01G205200 Manihot esculenta HOM05D004770 ORTHO05D005572 1.1e-32 144.1 92 75.0
CiPaw.07G089000 Carya illinoinensis HOM05D004770 ORTHO05D005572 1.5e-32 143.7 92 75.0
TWI39G0629 Tripterygium wilfordii HOM05D004770 ORTHO05D005572 1.5e-32 143.7 92 76.1
Nitab4.5_0000759g0280 Nicotiana tabacum HOM05D004770 ORTHO05D005572 2.6e-32 142.9 92 76.1
Lj2g0018175 Lotus japonicus HOM05D004770 ORTHO05D005572 3.3e-32 142.5 149 56.4
ATR0665G226 Amborella trichopoda HOM05D004770 ORTHO05D005572 5.7e-32 141.7 106 67.9
CAN.G1549.26 Capsicum annuum HOM05D004770 ORTHO05D005572 5.7e-32 141.7 92 73.9
Sopen06g035540 Solanum pennellii HOM05D004770 ORTHO05D005572 5.7e-32 141.7 92 76.1
unitig_0.g135 Utricularia gibba HOM05D004770 ORTHO05D005572 5.7e-32 141.7 92 71.7
Duzib138G1187 Durio zibethinus HOM05D004770 ORTHO05D005572 7.4e-32 141.4 92 73.9
Nitab4.5_0004355g0020 Nicotiana tabacum HOM05D004770 ORTHO05D005572 7.4e-32 141.4 92 75.0
Solyc06g084160.4 Solanum lycopersicum HOM05D004770 ORTHO05D005572 7.4e-32 141.4 92 76.1
Lj3g0010058 Lotus japonicus HOM05D004770 ORTHO05D005572 9.7e-32 141.0 92 75.0
Nn1g02388 Nelumbo nucifera HOM05D004770 ORTHO05D005572 9.7e-32 141.0 92 75.0
Nn6g34126 Nelumbo nucifera HOM05D004770 ORTHO05D005572 9.7e-32 141.0 92 73.9
Thecc.01G273700 Theobroma cacao HOM05D004770 ORTHO05D005572 9.7e-32 141.0 92 73.9
Lj6g0011383 Lotus japonicus HOM05D004770 ORTHO05D005572 1.7e-31 140.2 92 73.9
PGSC0003DMG400017838 Solanum tuberosum HOM05D004770 ORTHO05D005572 1.7e-31 140.2 92 72.8
PGSC0003DMG400020135 Solanum tuberosum HOM05D004770 ORTHO05D005572 2.2e-31 139.8 92 75.0
TAR362G0723 Trochodendron aralioides HOM05D004770 ORTHO05D005572 2.8e-31 139.4 92 72.8
Potri.002G049900 Populus trichocarpa HOM05D004770 ORTHO05D005572 3.7e-31 139.0 92 72.8
PGR031G3940 Punica granatum HOM05D004770 ORTHO05D005572 3.7e-31 139.0 92 72.8
Actinidia24914 Actinidia chinensis HOM05D004770 ORTHO05D005572 4.8e-31 138.7 92 71.7
Lj1A49T61 Lonicera japonica HOM05D004770 ORTHO05D005572 4.8e-31 138.7 92 72.8
Ciclev10022091m.g Citrus clementina HOM05D004770 ORTHO05D005572 6.3e-31 138.3 92 72.8
Glyma.17G044400 Glycine max HOM05D004770 ORTHO05D005572 8.2e-31 137.9 92 71.7
Gohir.A12G003600 Gossypium hirsutum HOM05D004770 ORTHO05D005572 8.2e-31 137.9 95 71.6
QL01p010878 Quercus lobata HOM05D004770 ORTHO05D005572 8.2e-31 137.9 92 73.9
AUR62012543 Chenopodium quinoa HOM05D004770 ORTHO05D005572 1.1e-30 137.5 92 70.7
HPP92_017651 Vanilla planifolia HOM05D004770 ORTHO05D005572 1.1e-30 137.5 106 66.0
Gohir.D12G003300 Gossypium hirsutum HOM05D004770 ORTHO05D005572 1.4e-30 137.1 92 72.8
Gorai.008G003100 Gossypium raimondii HOM05D004770 ORTHO05D005572 1.4e-30 137.1 92 72.8
Hma1.2p1_2357F.1_g320590 Hydrangea macrophylla HOM05D004770 ORTHO05D005572 1.4e-30 137.1 92 72.8
QL12p020786 Quercus lobata HOM05D004770 ORTHO05D005572 1.4e-30 137.1 173 50.9
vmacro02598 Vaccinium macrocarpon HOM05D004770 ORTHO05D005572 1.4e-30 137.1 93 71.0
SHI22269 Sapria himalayana HOM05D004770 ORTHO05D005572 1.8e-30 136.7 95 72.6
SGA_v2.0_scaffold1G00513 Striga asiatica HOM05D004770 ORTHO05D005572 1.8e-30 136.7 92 69.6
vmacro14906 Vaccinium macrocarpon HOM05D004770 ORTHO05D005572 1.8e-30 136.7 92 71.7
Cfa006174 Carpinus fangiana HOM05D004770 ORTHO05D005572 2.4e-30 136.3 92 71.7
AUR62032312 Chenopodium quinoa HOM05D004770 ORTHO05D005572 2.4e-30 136.3 92 69.6
DCAR_002713 Daucus carota HOM05D004770 ORTHO05D005572 2.4e-30 136.3 92 70.7
Migut.N02033 Erythranthe guttata HOM05D004770 ORTHO05D005572 2.4e-30 136.3 92 70.7
Potri.005G212800 Populus trichocarpa HOM05D004770 ORTHO05D005572 2.4e-30 136.3 92 69.6
Sabra02G0040800 Salix brachista HOM05D004770 ORTHO05D005572 2.4e-30 136.3 92 70.7
SalBow7G1168 Salvia bowleyana HOM05D004770 ORTHO05D005572 2.4e-30 136.3 92 68.5
Actinidia00788 Actinidia chinensis HOM05D004770 ORTHO05D005572 3.1e-30 136.0 92 71.7
Sabra05G0162600 Salix brachista HOM05D004770 ORTHO05D005572 3.1e-30 136.0 92 70.7
Aqoxy2G03435 Aquilegia oxysepala HOM05D004770 ORTHO05D005572 4.1e-30 135.6 92 69.6
EL10Ac5g10525 Beta vulgaris HOM05D004770 ORTHO05D005572 4.1e-30 135.6 92 70.7
Haze_04673 Corylus avellana HOM05D004770 ORTHO05D005572 4.1e-30 135.6 92 70.7
QL01p011010 Quercus lobata HOM05D004770 ORTHO05D005572 4.1e-30 135.6 92 71.7
CSS0005681 Camellia sinensis var. sinensis HOM05D004770 ORTHO05D005572 5.3e-30 135.2 92 70.7
MBI15_g39353_MAGBIO Magnolia biondii HOM05D004770 ORTHO05D005572 5.3e-30 135.2 92 70.7
PSO832G1010 Papaver somniferum HOM05D004770 ORTHO05D005572 5.3e-30 135.2 92 68.5
Peaxi162Scf00783g00122 Petunia axillaris HOM05D004770 ORTHO05D005572 5.3e-30 135.2 91 72.5
GSVIVG01001190001 Vitis vinifera HOM05D004770 ORTHO05D005572 5.3e-30 135.2 92 70.7
Lj3A581T22 Lonicera japonica HOM05D004770 ORTHO05D005572 9.1e-30 134.4 92 70.7
Cc01_g06090 Coffea canephora HOM05D004770 ORTHO05D005572 1.2e-29 134.0 92 68.5
Dinv34783 Davidia involucrata HOM05D004770 ORTHO05D005572 1.2e-29 134.0 92 71.7
THA.LOC104817561 Tarenaya hassleriana HOM05D004770 ORTHO05D005572 1.2e-29 134.0 92 67.4
CANSAT80G2828 Cannabis sativa HOM05D004770 ORTHO05D005572 2.0e-29 133.3 92 67.4
ECA248G2232 Erigeron canadensis HOM05D004770 ORTHO05D005572 2.0e-29 133.3 92 67.4
arahy.Tifrunner.gnm1.ann1.RIN6C8 Arachis hypogaea HOM05D004770 ORTHO05D005572 2.6e-29 132.9 92 68.5
arahy.Tifrunner.gnm1.ann1.W9SXTW Arachis hypogaea HOM05D004770 ORTHO05D005572 2.6e-29 132.9 92 68.5
arahy.Tifrunner.gnm1.ann1.YE39MU Arachis hypogaea HOM05D004770 ORTHO05D005572 2.6e-29 132.9 92 68.5
Migut.D00330 Erythranthe guttata HOM05D004770 ORTHO05D005572 2.6e-29 132.9 112 62.5
Nitab4.5_0000208g0100 Nicotiana tabacum HOM05D004770 ORTHO05D005572 2.6e-29 132.9 92 69.6
Rhsim13G0027500 Rhododendron simsii HOM05D004770 ORTHO05D005572 2.6e-29 132.9 91 69.2
Hund02843 Selenicereus undatus HOM05D004770 ORTHO05D005572 2.6e-29 132.9 92 69.6
Sopen08g001150 Solanum pennellii HOM05D004770 ORTHO05D005572 2.6e-29 132.9 92 70.7
VMungo0720G0347 Vigna mungo HOM05D004770 ORTHO05D005572 2.6e-29 132.9 92 69.6
CsaV3_1G039420 Cucumis sativus L. HOM05D004770 ORTHO05D005572 3.4e-29 132.5 106 65.1
Lsat_1_v5_gn_5_186200 Lactuca sativa HOM05D004770 ORTHO05D005572 3.4e-29 132.5 92 68.5
TPR.G25688 Trifolium pratense HOM05D004770 ORTHO05D005572 3.4e-29 132.5 91 71.4
Ca_15021_v3 Cicer arietinum L. HOM05D004770 ORTHO05D005572 4.5e-29 132.1 91 70.3
A06p36610 Brassica napus HOM05D004770 ORTHO05D005572 5.9e-29 131.7 92 66.3
BraA06t26586Z Brassica rapa HOM05D004770 ORTHO05D005572 5.9e-29 131.7 92 66.3
CSS0032403 Camellia sinensis var. sinensis HOM05D004770 ORTHO05D005572 5.9e-29 131.7 92 69.6
Actinidia09114 Actinidia chinensis HOM05D004770 ORTHO05D005572 7.7e-29 131.3 92 70.7
Medtr3g465790 Medicago truncatula HOM05D004770 ORTHO05D005572 7.7e-29 131.3 91 71.4
BcaNung03978 Brassica carinata HOM05D004770 ORTHO05D005572 1.0e-28 131.0 92 66.3
MELO3C015367.2 Cucumis melo HOM05D004770 ORTHO05D005572 1.0e-28 131.0 106 64.2
Solyc08g005140.3 Solanum lycopersicum HOM05D004770 ORTHO05D005572 1.0e-28 131.0 92 68.5
BcaNung02803 Brassica carinata HOM05D004770 ORTHO05D005572 1.3e-28 130.6 92 65.2
C07p41870 Brassica napus HOM05D004770 ORTHO05D005572 1.3e-28 130.6 92 65.2
ClCG03G016560 Citrullus lanatus HOM05D004770 ORTHO05D005572 1.3e-28 130.6 106 64.2
Prupe.8G236800 Prunus persica HOM05D004770 ORTHO05D005572 1.3e-28 130.6 94 71.3
BolC7t44719H Brassica oleracea HOM05D004770 ORTHO05D005572 1.7e-28 130.2 91 65.9
Lsat_1_v5_gn_3_83521 Lactuca sativa HOM05D004770 ORTHO05D005572 1.7e-28 130.2 92 67.4
arahy.Tifrunner.gnm1.ann1.S84LE1 Arachis hypogaea HOM05D004770 ORTHO05D005572 2.2e-28 129.8 92 67.4
Thhalv10004885m.g Eutrema salsugineum HOM05D004770 ORTHO05D005572 2.2e-28 129.8 92 63.0
HanXRQChr08g0213371 Helianthus annuus HOM05D004770 ORTHO05D005572 2.2e-28 129.8 92 65.2
Lalb_Chr18g0051481 Lupinus albus HOM05D004770 ORTHO05D005572 2.2e-28 129.8 92 68.5
Carub.0005s0602 Capsella rubella HOM05D004770 ORTHO05D005572 3.8e-28 129.0 92 65.2
Glyma.18G056100 Glycine max HOM05D004770 ORTHO05D005572 3.8e-28 129.0 92 68.5
Sp2g21620 Schrenkiella parvula HOM05D004770 ORTHO05D005572 3.8e-28 129.0 92 64.1
SGA_v2.0_scaffold80G25747 Striga asiatica HOM05D004770 ORTHO05D005572 3.8e-28 129.0 89 68.5
Aa31LG10G17080 Aethionema arabicum HOM05D004770 ORTHO05D005572 5.0e-28 128.6 92 64.1
RcHm_v2.0_Chr6g0290401 Rosa chinensis HOM05D004770 ORTHO05D005572 5.0e-28 128.6 108 63.0
Phvul.007G249400 Phaseolus vulgaris HOM05D004770 ORTHO05D005572 6.5e-28 128.3 92 66.3
AT5G26110 Arabidopsis thaliana HOM05D004770 ORTHO05D005572 8.5e-28 127.9 92 65.2
FAN20G2343 Fragaria x ananassa HOM05D004770 ORTHO05D005572 8.5e-28 127.9 94 68.1
MD11G1280900 Malus domestica HOM05D004770 ORTHO05D005572 8.5e-28 127.9 94 71.3
PSO210G1988 Papaver somniferum HOM05D004770 ORTHO05D005572 1.1e-27 127.5 92 66.3
Sp5g00290 Schrenkiella parvula HOM05D004770 ORTHO05D005572 1.1e-27 127.5 92 62.0
Sed0021970 Sechium edule HOM05D004770 ORTHO05D005572 1.4e-27 127.1 105 61.9
Carub.0006s2388 Capsella rubella HOM05D004770 ORTHO05D005572 1.9e-27 126.7 92 64.1
Cpa.g.sc41.63 Carica papaya HOM05D004770 ORTHO05D005572 1.9e-27 126.7 92 67.4
FAN27G1754 Fragaria x ananassa HOM05D004770 ORTHO05D005572 1.9e-27 126.7 94 67.0
Nitab4.5_0006132g0020 Nicotiana tabacum HOM05D004770 ORTHO05D005572 1.9e-27 126.7 135 52.6
AL2G11930 Arabidopsis lyrata HOM05D004770 ORTHO05D005572 2.5e-27 126.3 92 63.0
AL2G11990 Arabidopsis lyrata HOM05D004770 ORTHO05D005572 2.5e-27 126.3 92 63.0
DCAR_012498 Daucus carota HOM05D004770 ORTHO05D005572 2.5e-27 126.3 92 66.3
CARHR187390 Cardamine hirsuta HOM05D004770 ORTHO05D005572 3.2e-27 125.9 92 63.0
FvH4_2g23150 Fragaria vesca HOM05D004770 ORTHO05D005572 3.2e-27 125.9 94 67.0
Psat2g184920 Pisum sativum HOM05D004770 ORTHO05D005572 3.2e-27 125.9 83 74.7
SalBow4G2779 Salvia bowleyana HOM05D004770 ORTHO05D005572 3.2e-27 125.9 92 64.1
Phvul.006G075100 Phaseolus vulgaris HOM05D004770 ORTHO05D005572 4.2e-27 125.6 92 66.3
PSO170G2661 Papaver somniferum HOM05D004770 ORTHO05D005572 5.5e-27 125.2 92 65.2
VMungo0540G0250 Vigna mungo HOM05D004770 ORTHO05D005572 1.2e-26 124.0 92 66.3
SEGI_19127 Sequoiadendron giganteum HOM05D004770 ORTHO05D005572 1.8e-22 110.2 92 58.7
SEGI_22603 Sequoiadendron giganteum HOM05D004770 ORTHO05D005572 1.8e-22 110.2 92 58.7
Manes.05G078700 Manihot esculenta HOM05D004770 ORTHO05D005572 3.5e-21 105.9 92 63.0
Mapoly0133s0052 Marchantia polymorpha HOM05D004770 ORTHO05D005572 5.9e-21 105.1 92 57.6
Pp3c15_20330 Physcomitrium patens HOM05D004770 ORTHO05D005572 2.5e-19 99.8 92 53.3
AagrBONN_evm.TU.Sc2ySwM_362.2288 Anthoceros agrestis HOM05D004770 ORTHO05D005572 3.6e-18 95.9 92 50.0
Glyma.02G191000 Glycine max HOM05D004770 ORTHO05D005572 6.7e-17 91.7 69 63.8
SMO358G0317 Selaginella moellendorffii HOM05D004770 ORTHO05D005572 1.2e-16 90.9 82 58.5
CDE04G0604 Ceratophyllum demersum HOM05D004770 ORTHO05D005572 8.2e-15 84.7 59 71.2
MCO10G359 Micromonas commoda HOM05D004770 ORTHO05D005572 3.1e-14 82.8 104 38.5
CBR_g40454 Chara braunii HOM05D004770 ORTHO05D005572 1.2e-13 80.9 129 38.8
CSS0010466 Camellia sinensis var. sinensis HOM05D004770 ORTHO05D005572 1.2e-10 70.9 52 61.5
Psat6g025640 Pisum sativum HOM05D004770 ORTHO05D005572 1.6e-10 70.5 48 68.8
BcaC03g17841 Brassica carinata HOM05D004770 ORTHO05D005572 1.0e-09 67.8 68 48.5
Actinidia21133 Actinidia chinensis HOM05D004770 ORTHO05D005572 5.2e-09 65.5 42 66.7
TAR636G2941 Trochodendron aralioides HOM05D004770 ORTHO05D005572 1.2e-08 64.3 46 63.0
RcHm_v2.0_Chr3g0476231 Rosa chinensis HOM05D004770 ORTHO05D005572 1.5e-08 63.9 45 71.1
Zm00001eb031460 Zea mays HOM05D004770 ORTHO05D005572 1.4e-06 57.4 30 86.7


User provided reference genes

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